Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->AHL20(2)                       --------->ICU4               --------->LBD16 <---------AHL20(2)              <---------HSFB2a(2)             <---------LBD16<---------AHL20(2)           --------->GLK1(2)--------->AHL20(1)                  <----------DOF2           <---------ARR14(2) --------->YAB1            --------->YAB1                             --           --------->ARR14(2)<---------YAB1            <---------ATHB12                            --        <---------AHL20(2) --------->YAB1            --------->WOX13(1)                          ----      <---------AHL20(2)<---------ICU4             <---------ATHB12              ---------->TaMYB80-- ----At4g35610--------->HSFB2a(2)                --------->WOX13(1)      <-------TEIL    <---------KAN4(2)   tcatctatataaaaatccggaagtaagaattataatattatgtcaaattttcaatcaatcacaacgctttccaaatgcattggaatatgagaacatccaa  21809900                      --------->ARR11(3)                      <---------AHL20(2)                      <---------AHL20(1)         <---------AHL20(2)                                              <---------ANAC58         --------->AHL20(2)          <------MYB83                        <---------ANAC58         <---------AHL20(1)     <------MYB83                        <----------DOF2         --------->AHL20(1)     <------MYB46(1)                     <---------DAG2   --------->ANAC58   --------->AHL20(1)                         <-----------GT1   --------->ANAC58  --------->ICU4  <------MYB46(1)           <---------WOX13(1) ------->ANAC46 --------->ANAC55(2) --------->MYB59          --------->ATHB12 ------->ANAC58 ----------->GT1<---------AtMYB61          <---------ANAC46 ------>DOF2   --------->MYB59<---------WOX13(1)          <---------ANAC58          <---------GLK1(2) ------->ANAC58<---------TOE2(3)<---------MYB46(3)        <---------ANAC58 <---------MYB52(1)   aacgcaaggaataaatttaggtaatattttggattggttcggtttagttctaaattcttggcttgatttacttttccgtttggaccgatttttaaaccaa  21810000                                                       <-----------RAV1(2)                       <---                                                    <---------ARR14(2)                          -----                        <---------At5g28300         --------->ARR14(2)                       --------               --------->ATHB12                    <------ZmHOX2a(1)                   --------->YAB1              ------>ZmHOX2a(1)           --------->ARR14(2)                  --------->ARR11(3)-----            ----------->RAV1(2)           <---------ARR14(2)                  <---------ARR11(3)-----           ------>ZmHOX2a(1)          <---------MYB52(1)                  ----------->HVH21<---------   aaatcaagaagtcctcctgatttgtttaccgagataaaccggtggattttggaggaaccaggtagaatagaaccaattgacatcttcaattttaaaccac  21810100                                       --------->LBD16                                     <---------LBD16                                   --------->ARR14(2)       <---------DAG2              <---------ARR14(2)                                             ---    <-----------GT1             --------->ANAC46                                       <------MYB83 ------ATHB12                   --------->ANAC58                                ------------>CBF  <-- ---->ANAC46                    --------->ANAC58                              ------->GAMYB      <--- ->MYB46(3)                <---------GLK1(1)                            --------->TOE1(3)        <--- ---->ANAC58               --------->GLK1(1)             <------------CBF--------->DOF5.7(2)     <--- ---->ANAC58              >>>>>>>>>>GATA-1           --------->YAB1     --------->TOE2(3)   <-------- --GT1 <----------DOF2<---------MYB52(1)----------->GT1<---------YAB1   <----------DOF2<------MYB46(1)   tcaatttcacttttctgttaaaccggtggatttcaaggaaccgggtaacattgaatcaaaattgacattttcaactttaaccctcaatttggtttactgc  21810200       <----------DOF2     ------>ZmHOX2a(1) --->NtERF2 -------RAP2.6(3)                                           --------->TOE1(2) ------ANAC58                  <----------DOF2        <---------HSFB2a(2) ------ANAC46             <-----------GT1             --------->HSFB2a(2) ------ANAC58         <----------DOF2                *TSS  --------->MYB46(3)           <---------DAG2 -At5g28300   <------------CBF <---------DAG2    <---------HSFB2a(1) <-----------GT1    <----------DOF2   cgtcttcctctttaaaaattgagactttattccctttacctctcgctgggcatcttcgcgaaccagcgatttaagcactcccaactctcactttctccct  21810300                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58     ------>MYB83                                      --------->ALFIN1          ------>MYB46(1)                                   --------->ARR14(2)        --------->DEAR3(2)                                   <---------ARR14(2)       --------->MYB52(1)                                  ------>MYB83            --------->ARR14(2)                                  ------>MYB46(1) <---------TOE2(1)                                --------------->AGL15     <---------ARR14(2)              --------->ANAC58 <-----------------AGL3   <-------TEIL            <---------At4g35610              --------->ANAC58 ----------------->AGL3  <--------P <----------DOF2  <---------At4g35610           <---------SPL7    <-----------GT1      <---------TOE1(1)        <---------CCA1(2) <-------   tctcccttctcgctggacgcattcactgaaatcaccaaatttggggcttggaacgaggtagataccgacttttactcatctcttctgcttctactgattc  21810400                                                         ----------->GT1                                                       <-------GAMYB                                            --------->GLK1(1)        <---------SPL7              <---------GLK1(1)             <---------GLK1(1)--------->ATHB12         <---------LBD16             <---------AtMYB61<---------ANAC58     <----------DOF2          <-----------GT1         <---------ANAC58 --GLK1(2)    --------->GLK1(1)   <----------DOF2     <---------ANAC46    <---------MYB52(1)      <--   tgttctccttttggggatttcttagttcaaagtttccttttggtggatttctgtttgcgttgttaattgggcttccgcttgctctgtttgatttcaagtt  21810500                                      <---------ANAC46                                      <---------ANAC58                                      ----------->RAV1(2)                                           -                                      <---------AtLEC2                                           ----                                   <---------WOX13(1)                                            ----                                 <---------ICU4            <---------AHL20(2)                    ----                                 --------->ATHB12    <---------At4g35610                         ----                                --------->ICU4--------->ZAT14                                    ----                                <---------YAB1<---------ZAT14                                    <---        ------>ZmHOX2a(1)  --------->ANAC46  <----------DOF2       <---------YAB1              <----- ---------GT1          <-----------GT1<---------ANAC58 ----------->GT1                <-----------GT1   tcacttattcctctatttcgatatttcacaaaccatgattgcctggactttactcatctgttaaatttcatgtttgaatcaattgtttttaccagtttca  21810600         <---------ALFIN1  <-----------GT1                                           <-----------GT1 --------->GLK1(1)                 --------->ZAT6      <---------ICU4 ------>TEIL                      <---------YAB1       --------->YAB1                             --- ----->ANAC55(2)                <---------ICU4        <---------ATHB12                          ----- ----->ANAC58                  <---------YAB1         --------->ICU4           ---------->DOF2  ----- ----->ANAC58                  --------->ICU4    <------MYB46(1)             <---------YAB1     <---- ----->ANAC55(1)             <---------ICU4      <------MYB83<---------At5g28300                <---- ----->ANAC46               <------ZmHOX2a(2)   --------->MYB59 --------->At4g35610           <------ ------ANAC55(2)           <---------ARR11(3)   --------->MYB46(2)        <---------YAB1<---------TOE2(3) ------GT1                 --------->ARR11(3) <---------MYB52(1)<---------At4g35610 <----------DOF2   cgtatttccttccacttgctctgtttgtagatcattatcactggaactgtttggtaatcatgttactgctgatgttcttataaaagctttgagatttgtg  21810700                           <------ZmHOX2a(1)                           ================HOX2a_HOX2a                        <---------At4g35610                                            -------->P  -- ---->TEIL           <---------ZAT14                                                 ------>ZmHOX2a(1) ---->ZAT18          --------->ZAT14                                                <---------ANAC58 ---->ZAT14       <---------ANAC58      <--------P-------->P                 <-----------HVH21     <- -----ZAT18       <---------ANAC58  ------>ZmHOX2a(2)                   <---------ARR14(2)        <-- -----ZAT14    <----------DOF2     <XXXXXXXXXXXXXXXXXXXXMIR167C         --------->ARR14(2)  --------- ---------AtSPL8  <---------ANAC46<---------ARR14(2)            <----------DOF2     <---------ANAC58   tacttagtatacctcttctttcgtgcagaggagatggatcgtgttggcagtctaccagacgagcttctttctcatatactgtcattccttaccacaaagg  21810800  Previous    Next  AGI:  At3g59000.1    Description:  F-box family protein. Identical to F-box protein At3g59000 [Arabidopsis Thaliana] (GB:Q2V3N5;GB:Q9LYT6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63564.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 21810253    to: 21812720    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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