Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ---------->DOF2 -------->AtLEC2                                 --------->YAB1 -------ANAC58                               <---------YAB1 -------ANAC58   <---------DOF5.7(2)         --------->ICU4 --YAB1        --------->DOF5.7(2)      ----------->GT1                 <---------TOE2(3)     <------ -AHL20(2)     <---------MYB52(1)      --------->DAG2   <---------ARR11(3)                  <-------- -AHL20(1)    <-------GAMYB           ---------->DOF2   --------->ARR11(3)             <------MYB83-- >AHL20(1)    --------->TOE2(3) --------->ZAT6  <---------YAB1    ------->TEIL         <------MYB46(1)   tcttgcaaaaagagttcgttaactgcattcttcaacactataaagtgattatcaaaaacatcttcatgaacattaagaaaaacaatatttggtttcggtt  21749000                XXXXXXXXXXXXXXXXXXXX>MIR778                <---------ANAC58                <---------ANAC58           <---------AtLEC2           <---------ANAC58    <------MYB46(1)    <------MYB83<---------ANAC46 -GAMYB    <---------ANAC58              <----------DOF2                                  ----------- -ANAC46 <---------YAB1             --------->HSFB2a(2)               --------->GLK1(2)  ----------->GT1 ------->ARR11(3)                   <---------HSFB2a(2)    <---------YAB1    --------->YAB1     -----   agagcttggttttgcttggcttgattcacatacccattctagactttggcataaatttgatacgatagagagcatctaatggtaatgcagaagggtaaaa  21749100                                                    --------->HSFC1(2)                                                    <---------HSFC1(2)                                            --------->HSFB2a(2)                                            <---------HSFB2a(2)                                       <---------HSFB2a(1)                                       --------->HSFC1(2)            ----------->GT1            <---------HSFC1(2)                                <-----------GT1    ----------->GT1                    --------->HSFB2a(1)<---------At4g35610           ---------->ID1 >GT1    ---------->DOF2             <------ZmHOX2a(1)   <---------YAB1              <---------DAG2 ----->DOF2--------->DAG2      --------->YAB1 ---------->DOF2                        <----------DOF2   aaggaagagagaaaaggtgagaaagattaccaaaaataaggagtttccaaaagatggttctgatgagaaacagagcccatccctctccttttccccttcc  21749200                                       ------>MYB46(1)                                 <---------AHL20(2)                                       -------->P                                     <---------AHL20(1)                                     <---------MYB111(1)                          <---------AHL20(2)                      ------>ZmHOX2a(1)------>MYB83                        <-----------GT1 <---------              <------MYB46(1)        <---------MYB111(2)              <---------YAB1  --------->AHL20(2)              <------MYB83           --------->AtMYB61         <----------DOF2    --------->AHL20(2)             <---------AtMYB61    <---------ALFIN1          <-----------GT1<<<<<<<<<GT-1  <----------      <---------GLK1(1)         ------>ZmHOX2a(1)  <----------DOF2 <---------YAB1--------->AHL20(2) ---------->DOF2   ------>ZmHOX2a(1) <---------MYB46(2)<----------DOF2--------->ICU4  <---------AHL20(2)   catgaaagaaatcggatggtcctccttcaatgtcctccacctactcttctcttctttctttttttctttcttattattaaccatttaattaatttcccct  21749300                                                               <---------AHL20(2)                                                               --------->AHL20(2)                          --------->AHL20(2)                 <-----------TBP                        ----------->GT1                 <---------ARR11(1)                      ---------->DOF2                   <---------ARR11(3)                 --------------->AGL15                  --------->ARR14(2)                 ----------->GT1                 --------->GLK1(1)                        --------->ALFIN1                 <---------HSFB2a(2)             <---------GLK1(1)                     --------->DAG2                 --------->HSFB2a(2)            --------->ARR11(3)    ------->TEIL --------->AHL20(2) --GT1           <---------------AGL15          <---------ARR11(3)   <---------AtLEC2 ---------->DOF2 -GT1         <---------AGP1      --------->ANAC46     <---------CCA1(2)    ----------->GT1      ----   tcaatttcagtttctagttctgtaaaaagaaaatacacatctcacttatagatatccatatctatttatatgcatgtatagagaataaaaaagtgtgagt  21749400                                                                                <---------AHL20(2)                                                                               <---------AHL20(1)                                                          <----------DOF2      <---------AHL20(2)                                                       <-----------GT1         --------->ARR11(3)                                          --------->At4g35610                  <---------ARR11(3)                                         <---------ARR11(3)                    --------->AHL20(2)           <---------ANAC58          <---------At4g35610---------->ID1         --------->AHL20(1)           <---------ANAC46   <------------CBF      <---------AHL20(2)        --------->AHL20(2)           <---------ANAC58------------>CBF------>ZmHOX2a(2)              --------->AHL20(2) ----->GLK1(2)      <----------DOF2  *TSS--------->ARR11(3)         <---------ANAC46       ----------   ttctaggtatgttgagtatgtgctgtttggacaattgttagatgatctgtccatttttttcttttttcttctgtgtataaatatatttgagcacaaagaa  21749500                                           ---------->DOF2                                        ---                                       --------->TOE2(3)                             --------->ARR11(3)     <-----------GT1                   --------->TOE1(3)                             <---------ARR11(3) >DOF2                              <-----------GT1                      ---------->DOF2     --------   aaactaataaccttctgttttcagcaagtagggtcttataaccttcaaagaaatattccttcaattgaaaacccataaaccaaaatagatattacaaaag  21749600                                                     <---------------AtSPL8                                                   <---------ANAC46                                                 --------->ZAT14                                 --------->DAG2  <---------ZAT14       <---------CCA1(1)        ---------->DOF2 <---------MYB52(1)       <---------RVE1(1)    --------->YAB1  <---------At4g35610      <---------ARR11(3) <---------ICU4     --------->At4g35610      --------->ARR11(3)--------->ICU4     ----------->RAV1(1)                                   <--- ------->DOF2           <---------YAB1--------->At4g35610             --------->ARR11(3)     <------- -->DOF2            ----------->RAV1(1)  --------->At4g35610          >>>>>>>>>>GT-1 --------->HSFB2a(2)   gaaagagagatattttcaagaacaacataattagaaaagcagaagcagcagttaagtggtactgagataaatgatatagtttctcttcaagaacagtttc  21749700        <---------DAG2      ------>MYB46(1)                                   ----------->GT1            --------->TOE1(3)      ------>MYB83                                  <---------AtMYB61              --------->TOE2(3)     <---------ALFIN1                               <---------TOE1(3)        --------->TOE2(3)    --------->MYB46(3)    ------>ZmHOX2a(2)         <---------TOE2(3)       --------->YAB1    <---------MYB59 <---------At4g35610             --------->DAG2    ------->TEIL--------->ZAT6 ------YAB1    <---------DAG2      --------->ICU4 <--------P --------->ICU4<---------ATHB12         < --GLK1(2)     <----------DOF2--------->YAB1  <-----------RAV1(2)    <-----------GT1     --------->YAB1   tcattacccaccttctcctttttgctgatctatcgtaatcttgagaactcaggtaaggttgtgaatattatgcaccattcattaaccctaaaaataagag  21749800                                                                                                  ---                                      --------->MYB46(3)                                       <-----                             <---------ANAC58                            <---------ANAC58      ------     <---------AHL20(2)      <---------ANAC58                            <---------ANAC58      <-----     --------->AHL20(2)    <---------YAB1                     <---------ANAC58                <------ --------->AHL20(2)       <---------GLK1(2)                   <---------ANAC46           --------->CCA1(2) ---------AHL20(2)<----------DOF2   <-----------GT1           <---------ANAC58    ---------->DOF2<---   atttaaaataaatgtttcttctttctctgattcttgtgtaaccaattcatgggtttgatatgtttcttggttattgcttatcaacaaagagatttgatca  21749900  Previous    Next  AGI:  At3g58780.1    Description:  SHP1 (SHATTERPROOF 1); DNA binding / transcription factor. Identical to Agamous-like MADS-box protein AGL1 (AGL1) [Arabidopsis Thaliana] (GB:P29381); similar to SHP2 (SHATTERPROOF 2), transcription factor [Arabidopsis thaliana] (TAIR:AT2G42830.1); similar to SHATTERPROOF1 [Brassica napus] (GB:AAK00646.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 21749437    to: 21752884    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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