Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->YAB1                                                    <---------ATHB12                                                   ------>MYB46(1)                                                   ------>MYB83                                                 <---------MYB46(2)                                                 --------->AtMYB61                                                 --------->MYB46(3)            --------->ANAC58                     <---------MYB111(1)            --------->ANAC58                    --------->ANAC58 ------>ZmHOX2a(2)                     <---------ARR11(3) --------ARR11(3)                    <---------MYB52(1) ------->ARR14(2)                    --------->DOF5.7(2)    --------->GLK1(2) --------ARR14(2)             <---------ANAC58  --------->ANAC58               --------->ANAC58 ----ZmHOX2a(1)               <---------ANAC58  --------->ANAC46               --------->ANAC58 ----LBD16---------->DOF2  ------>ZmHOX2a(1)  --------->ANAC46                 --------->ANAC46  ----   ggatcgtataagttaagccccttgtcatccttccctgtcgttatcttcacaccaaacatgaaaatccatttatacacactcacacaatatacaaaaaaca  21734400                                                                                       ------->GAMYB                                                                                      ---------------                                                                                    <-----------GT1                                                                                    --------->MYB52(1)                                                                                 <----------DOF2                                                                          <---------WRKY12             <---------ICU4                                              <------ZmHOX2a(2)             --------->MYB52(1)                       --------->AHL20(2)--------->ARR11(3)            --------->ICU4              --------->At4g35610             <---------ARR11(3)--------->SPL7 ----->GLK1(2)          <---------ATHB12<---------At4g35610 <-----------GT1--------->MYB52(1)   atctattcgtagtactaatggccacaatgaagaaataacttcagcataaaaactcattatatataccttcttgagatcaacggttttaacggtaccatgc  21734500                                                                                     <---------ANAC46                                                                                     <---------ANAC55(2)                                          <---------ARR11(3)                         --------->ANAC55(2)                                          --------->ARR14(2)                      --------->ARR14(2)                              --------->ANAC58                                    <---------ARR14(2)                             --------->SPL7<------ZmHOX2a(2)                    <---------MYB46(3)                             --------->ZAT14              ---------->DOF2     <---------At4g35610                           <---------SPL7 <---------ARR14(2)               <---------ZAT14                         --------->LBD16  --------->ARR14(3)               --------->ZAT14        ---                   <---------ICU4         --------->ARR11(3)               --------->ABI4(2)      ---                  <-------TEIL--------->ANAC58          <----------DOF2   --------->ALFIN1        <--              <---------ARR11(3)          <---------ARR14(3)           <---------DEAR3(1) --------->At4g35610          <---------At4g35610<---------ZAT18------>ZmHOX2a(2)    <------ZmHOX2a(2)<---------MYB52(1) >AtSPL3<---------PCF2   --------------->AtSPL8        --------->TOE2(3)<---------ANAC46  <---------At4g35610   tctgagactgggacctgatattcattccccgtacgctcatcgacgatcttcaaatttcctttaagcgatccatgcggtgcagcggttatgtgagccgatg  21734600                            <---------GLK1(2)                        ----------->RAV1(2)        --------->ZAT18                      --------->REM1(1)            <---------ZAT18                      <---------ALFIN1      <-----------HVH21                    ================RAV--------->ARR14(2)                    ----------->RAV1(1)<---------GLK1(2)                  <------NtERF2        <---------ARR14(2)                 ------>NtERF2   <---------At4g35610                                        <-------- ------>ZAT18   --------->ATERF1(2)    --------->ARR11(3)       ----------->GT1            --------->GLK1(1) ------>ZAT14   <---------ATERF1(2)  ----------->ARR10        --------->RAP2.6(3)        --------->LBD16 -------ZAT18------>ZmHOX2a(2)   --------->At4g35610 --------->ZAT18                    --------->ANAC46   tgcaccatggttcgatcgctggcaacacctgattcggctcagatactgtcaagtgcgcattgagaacggctaatcgagctctagctctctccgaaatctc  21734700                 <------ZmHOX2a(2)                                                            <------                <---------ARR11(3)                                                      <---------AtLEC2                --------->ARR11(3)                           <---------REM1(1)         <<<<<<<<<<FUS3       --------->TOE2(3)                                   <-------GAMYB               >>>>>>>>>>ABI3      <---------At4g35610                                 <-----------RAV1(1)          >>>>>>>>>>FUS3      --------->At4g35610    ---------->DOF2        <---------O2     ---------->DOF2  --------->ANAC58  <-----------HVH21        --------->ANAC58         --------->O2   *TSS               --------->ANAC58 -ARR11(3)  ---------->DOF2--------->ANAC58--------->YAB1 <---------MYB46(3)<-----------TBP----------   catttgtcacctcaaaaagatcacaattcaagaaagggaagcgaataagaaaccaagtggctgttgtagttcaaagtgatatataggcatgcatggtttt  21734800                                      ---------->ID1                      --------->ZAT14                                 <----------DOF2                      <---------ARR14(2)                         <---------ANAC55(1)                          --------->ARR14(2)                         --------->ANAC46                        <---------ANAC58                         --------->ANAC55(2)                     <---------ANAC46                         --------->ANAC58                    <---------WOX13(1)                         <---------ANAC58                   <------------CBF                         <---------ANAC58                  --------->ATHB12                      ----    ----------->GT1      --------->ANAC58                 <---------YAB1  <---------ZAT14       <---- --------->ALFIN1        <---------ANAC55(2)        <---------ANAC46  ------->TEIL            ------- -----TBP                --------->ANAC55(1)      <-----------RAV1(1)<---------CCA1(2)   ---------->ID1 ->GT1         <---------ICU4 --------->ZAT6   <----------DOF2   <---------ANAC58    <----------DOF2   atagtggggaaatttgataatttcattacgtaacacttttgtcttaatacttttgtgggtatgattggcgtgaatctacagtgtcttctttgtcttcaat  21734900                                                                 <---------ANAC58                                                              <--------P          <---------ANAC58                                   <---------ANAC58          <---------ANAC46                       <---------ANAC55(2)          <---------ANAC58                       --------->ANAC55(2)  <-----------GT1         -------       <---------RAP2.6(2)                      --------->MYB59  <---------ANAC46             >>>>>>>GRF7       ---------->ID1                         <---------MYB52(1) <---------ANAC58            <-------     <-----------RAV1(1)                     <-------GAMYB   <-------GAMYB             <---------ICU4 ----->YAB1<----------DOF2               ----------->RAV1(1)<---------MYB46(3)      --------->WOX13(1) -----ATHB12          --------->YAB1     ------------>AtMYB77<---------ANAC58     <---------MYB52(1) -->WOX13(1)   <-----------GT1          ----------->HVH21  <---------AtMYB61<----------DOF2<---------   cagagttttgtggcttttaaccaattttaagtatgtgtctctgcgacagttatgtattgttttggttgcttcttacttctttctgttaatcagtgtcagg  21735000                                                                                            ---------                         <----------DOF2                                                    <--------ATHB1                    <-----------TGA1                                                       <---------ATHB51                   --------->ANAC46                                                        --------->ICU4                   --------->bZIP60(1)                                            --------->ATHB51         ----------->GT1 <---------DAG2                                           --------->ATHB12   --------->LBD16<---------TOE2(3)                                              <---------AHL20(2)  <---------LBD16<---------DOF5.7(2)                                             <---------YAB1 -->MYB59--------->MYB52(2)               <---------ZAT18                     --------->ICU4--------- ----RAV1(2)     <-----------GT1   <---------YAB1                             <-----------------AGL3 --HVH21 <---------MYB46(3)   <----------DOF2<---------ALFIN1             ----------->GT1  <---------ATHB12   tactccagggtttgttatttaacgtcacttttcttttatatttgttcacacttctcacaattgttctcatttgaaatggaaatattattggcaataatgc  21735100                                --------------->AtSPL3                                --------------->AtSPL8                          <---------YAB1                 --------->AtLEC2                 --------->ANAC58   --------->SPL7                           <---------YAB1             <-----------HVH21 --------->MYB52(1)                       <---------At4g35610  --------->YAB1 --------->ANAC58 <---------SPL7                     <--------P              --------  --------->ATHB12      --------->AHL20(2)                           <---------MYB52(1)     --------- <---------YAB1  --------->ANAC46----------->GT1  --------->CCA1(2)<---------MYB46(3)       --------- >YAB1      <----------DOF2   <-----------GT1  <---------YAB1  --------->ATHB12             <-------- ->DOF2<------ZmHOX2a(1)--------->YAB1   --------->AHL20(2)   <---------ATHB12             <---------GLK1(2)   aaaatgataggaaactttcaggcaaattataaataccgtacaaaaaaatatgatatgatgttcaatgagtggttagcttattgttatcacttggaatctg  21735200                                                         ----------->HVH21                                                        <---------WOX13(1)                                                       <-------GAMYB                                                      --------->MYB55(2)                                                   <------MYB83                                                   <------MYB46(1)                                                  --------->MYB111(1)                                              --------->ATHB12        <-----------GT1                      <---------YAB1 ->At4g35610                        ------>ZmHOX2a(1) <---------MYB46(3) >GLK1(2)                    <---------MYB52(1)   <---------AtMYB61 >ARR14(2)                 ----------->GT1 --------->CCA1(2) -ARR14(2)       --------->YAB1    --------->TOE2(3) <---------AtMYB61 --------->MYB46(3)           <   cataacatattcaccctaaaaataacattcagttaatcctaaatgatatgatttggtggttgacattttccaaaccaatgtgttagacatgtcttcagaa  21735300  Previous    Next  AGI:  At3g58740.1    Description:  CSY1 (CITRATE SYNTHASE 1); citrate (SI)-synthase. Identical to Citrate synthase 1, peroxisomal precursor (CSY1) [Arabidopsis Thaliana] (GB:Q9LXS7); similar to CSY3 (CITRATE SYNTHASE 3), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G42790.1); similar to CSY2 (CITRATE SYNTHASE 2), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58750.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); similar to citrate synthase [Oryza sativa (japonica cultivar-group)] (GB:ABL98204.1); contains InterP Range:  from: 21731750    to: 21734767    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58750.1    Description:  CSY2 (CITRATE SYNTHASE 2); citrate (SI)-synthase. Identical to Citrate synthase 2, peroxisomal precursor (CSY2) [Arabidopsis Thaliana] (GB:Q9LXS6;GB:Q570I4); similar to CSY3 (CITRATE SYNTHASE 3), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G42790.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); similar to citrate synthase [Oryza sativa (japonica cultivar-group)] (GB:ABL98204.1); conta Range:  from: 21735291    to: 21738667    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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