Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ===============================HOX2a_HOX2a                 <------ZmHOX2a(2) -------->YAB1 <------ZmHOX2a(1)         ------>ZmHOX2a(1)   ------->TEIL         ---------->DOF2 --------YAB1<---------TOE1(2)           ===================================HOX2a_HOX2a ------------>WRI1--------->ATHB12 ---------->ID1      <----------ID1------>ZmHOX2a(2)   tatcatcgacattcacaggatcagtggaagacttcttgtcttcctccatagtcgaagaagacgaagcttgatccatctcagaaacaaagaatttaacttg  21682000                                          --------->TOE1(3)                                        <---------ARR11(3)                                        --------->ARR11(3)                                       <---------CCA1(2)             <---------YAB1         <--------                                    --------->LBD16                ----------->GT1    ===============                                   ----------->GT1            --------->LBD16         <---------O2                        <------ZmHOX2a(2) --------->TOE2(3)  --------->HSFB2a(2)      --------->O2         --------->At4g35610       <---------ANAC55(2)       <---------HSFB2a(2)      --------->TGA1a         <---------At4g35610       --------->ANAC46      =======================================bZIP_DOF       <-----------RAV1(2)   <---------MYB52(2)          <----------DOF2              <---------TGA1a   gagaaaaacccagatgagactaatcgatcaaacaaacccgtaaatcttaaatgttaagtctttcccgaactgtgattacaacaatctcacgagtcgcgaa  21682100                                --------->REM1(2)                                --------->ZAT14                                <---------ZAT14                             <---------ANAC46                           --------->ALFIN1                         <---------ANAC58                         <------MYB46(1)                         <------MYB83                         <---------ANAC58                         <---------ANAC46                         <---------ANAC55(1)                        --------->MYB52(2)                        --------->MYB111(1)                                            -------->P                        --------->MYB59                                             --------->At4g35610                        <---------AtMYB61                                           <---------At4g35610                        --------->MYB55(2)                                         --------->ANAC46                        --------->MYB46(2)                                      ------>ZmHOX2a(2)                       <---------MYB55(1)                                      --------->CCA1(2)                      <---------MYB52(1)                                       <------ZmHOX2a(2)                     <-----------HVH21                                        --------->ARR14(2)                     <----------DOF2                                          <---------AGP1                  <---------ANAC58                                            <---------ARR11(3)                  <---------ANAC46                                            <---------ARR14(2)                  <---------ANAC58  <---------ZAT6                            --------->AGP1               <---------ARR14(2)   <---------ANAC46                          --------->ARR11(3)               --------->ARR14(2) <---------ANAC46         <---------At4g35610<-----------ARR10 -HSFB2a(2) <---------TOE2(3)--------->ALFIN1<---------MYB52(1)              <---------CCA1(2) ===============================bZIP_DOF    *TSS  ------------>CBF       <-----------HVH21   gacgaagaaacgtagaggtttcgcgttaggtgtgtgtagtgtataccattacttcaatctgagctacttcaaaaccatcagatctaagctacctctgtta  21682200                                                                --------->DEAR3(1)                                                               --------->MYB46(3)                                                             --------->AtMYB61                      -                      <----------DOF2                        <---------ALFIN1                       -                  --------->WRKY45                          --------->MYB46(3)                      -                  --------->WRKY12                         ------>ZmHOX2a(1)                       --                  --------->WRKY38(1)                     --------->ANAC46              <---------At4g35610               <---------ANAC46                        --------->ARR14(2)               --------->At4g35610     --------->DEAR3(2)                                <---------ARR14(2)         ---------->DOF2 ---    ------->TEIL --------->DOF5.7(2)                   ------->TEIL          <---------YAB1  <-------   aatctgaaccgtctattacgttgactttgaaaccctgatatagactagacacctatgtatcctccaccgctgggaagtcaacattgaagcagttgatgga  21682300       <---------ATHB12       --------->MYB46(3)       <---------MYB55(2)      --------->ANAC58      -------->P      --------->ANAC58      ------>MYB46(1)      ------>MYB83     --------->MYB55(1)    <---------MYB55(2)    <---------MYB46(2)    --------->AtMYB61    --------->DEAR3(1)    --------->MYB46(3)    <---------MYB111(1)    <---------MYB111(2) ----->MYB83                     <----------DOF2 ------->P                       <---------------AGL15                                         <----- ----->MYB46(1)                  --------->TOE2(3)                           <-------TEIL      <----- --------->RAV1(1)               --------------->AGL15                  ----------->TBP        ------ ------>AtMYB61         <---------ALFIN1    <----------DOF2             <---------YAB1     <XXXXXXXXX --WOX13(1)   ---------->DOF2 <---------AHL20(2)                      --------->YAB1      <---------AHL20(2)   ccaacaccaaccaatagaaagaacgtccacatttactttaatgggccttttaaactaataggcctaggcccattataaatacatggatttgttttatttt  21682400                                             --------->ZAT18                                 ----------->GT1          *TSS                   <------MYB46(1)        <---------ARR14(2)       <------MYB83<---------ZAT14        --------->ARR14(2)      --------->MYB59       <---------CCA1(2)        --------->MYB46(2) ----AHL20(1)                   --------->MYB111(1)   <-----------GT1                       --------- ----AHL20(2)              <---------YAB1    xxxxxxxxxxxxxxxxxxx>smallRNA(l2)               <-------- --->AHL20(2)              --------->ICU4    <---------ZAT18                ----------->HVH21 XXXXXXXXXXXMIR1886.1 <---------MYB46(3)  --------->ALFIN1    ----------->HVH21           <---------ZAT18   atttttctcatatctgtctcttggtggtgatgagtaggtaaactgtgtgcgcttattaacttctctcacactgactctgcgaccctaatttgtgagctct  21682500                                           --------->ATERF1(1)                                           <------NtERF2                                           <---------At4g35610                                          <---------ERF1                                          <---------MYB46(3)                                          ------>NtERF2                                          <---------ATERF1(1)                                          <---------RAP2.3(1)                                          <---------DEAR3(2)                                         --------->DEAR3(1)                                         <---------DEAR3(1)                                         <---------ANAC46                                         <---------RAP2.6(2)                                         --------->ATERF1(2)                                        <------NtERF2                                        --------->ATERF1(1)                                        <---------At4g35610                                        --------->DREB2C(1)                                        --------->RAP2.3(1)                                        --------->DEAR4(2)                                       <---------RRTF1(1)                                       <---------DEAR4(2)                                       <---------ATERF1(1)                                       <---------RAP2.6(1)                                       <---------ERF1                                       ------>NtERF2 --------->MYB46(3)                                       <---------RAP2.3(1)                                       <---------ORA47(2)                                      <---------RAP2.6(2)                                      <---------RAP2.3(2)                                      <---------DEAR3(1)          --------->RAP2.3(3)         <---------ATERF1(2)        --------->ZAT18               --------->ATERF1(2)        <---------ZAT18               <---------RRTF1(2)        --------->ZAT14               <---------RAP2.3(3)        --------->LBD16               <---------RRTF1(3)   <----------DOF2                    <---------DREB2C(2)                                     ------- >At4g35610                           <---------ANAC46              <----------DOF2     <<<<<<<<<TBF1 -At4g35610            --------->REM1(1)<---------DREB2C(1)    ------>ZmHOX2a(1)    ------>ZmHOX2a(1)   cttctctttgcgcagtcaatttgctacaacttagaaaatggcggcggctacttcatccatcgctccttctctttcatgcccatctccttcttcttcatcc  21682600                                                                                               <-----                         <---------HSFB2a(1)                                                 <-------                 --------->ANAC58                                                           ---------                 --------->ANAC58    --------->MYB46(3)                                    <------NtERF2      <---------AtMYB61--------->ARR14(2)                                                  --------->MYB46(3)    <---------MYB52(1) <---------ARR14(2)                                                  --------->DEAR3(2)    <----------DOF2    <---------GLK1(2)                                                  ------>NtERF2 -->AtLEC2     ---------->DOF2      --------->ANAC46------>ZmHOX2a(1)                    <---------ALFIN1   aaaaccctttggtcttccaaagccagaaccttggctctacccaatatcggtttcctctcgtcttcttccaagtctctgaggtcgcttactgccaccgtcg  21682700                    ------>ZmHOX2a(1)                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                --------->ARR14(2)                <---------ARR14(2)         --------->ATERF1(1)                                  ----------->RAV1(2)         <------NtERF2                                  ---------->DOF2        >>>>>>>>>>>>>>>>>LFY                           <---------WRKY12        ------>NtERF2                                  <---------WRKY45        <---------RAP2.3(1)     --------->ANAC58       <---------WRKY38(1)       <---------bZIP60(1)      --------->ANAC58      --------->WRKY18(1)       --------->PCF2        ------>NtERF2           <-----------HVH21                              <       --------->bZIP60(1)   --------->At4g35610  --------->At4g35610                             --- ----DEAR3(1)   <---------GLK1(2)              ----------->RAV1(2)                               ---- ----HVH21      <---------ARR11(3)<---------AtLEC2<---------At4g35610                 --------->At4g35610 >DEAR3(1)<---------ALFIN1   <---------At4g35610<---------DEAR3(1)                    <---------At4g35610   ctggaaatggcgccactggatcctcccttgccgctcgcatggtttcttcgtctgcggtcaaagcccctgtttctctcgattttgagacatctgtcttcaa  21682800                                                                                                <----                                                                                        <---------ICU4                              ----------->GT1                                           <--------HAHB4                   <---------MYB46(3)                  <---------ICU4                   --------->YAB1 ----------ID1   <---------ANAC46           <---------At5g28300                        <---------YAB1 ------>DAG2     <---------ANAC58           <-----------GT1                            --------->ICU4 ------>DOF2     <---------ANAC58          <-----------GT1                           --------->YAB1   aaaggagaaagtttctcttgctggttacgaagaggtttatctcatttaccctcttattcatttctgttctaatttgtgcttattctataatcattttgat  21682900  Previous    Next  AGI:  At3g58600.1    Description:  similar to ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT1G03900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69858.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) Range:  from: 21679492    to: 21682144    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58610.1    Description:  ketol-acid reductoisomerase. Identical to Ketol-acid reductoisomerase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q05758;GB:Q42559); similar to Ketol-acid reductoisomerase, chloroplast precursor (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (GB:O82043); similar to acetohydroxy acid isomeroreductase [Pisum sativum] (GB:CAB61890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69003.1); contains InterPro domain Acetohydroxy acid isomeroreductase C-terminal; (InterPro:IPR000506); contains InterPro domain Acetohydroxy acid isomeroreductase, catalytic (InterPro:IPR013116); contains InterPro Range:  from: 21682410    to: 21685818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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