Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL20(1)                                                          --------->AHL20(1)                            <---------AHL20(2)            --------->AHL20(2)                         --------->AHL20(1)               <---------AHL20(1)                         <---------AHL20(1)             --------->AHL20(1)                        <--                  ----------->HVH21                     <---------ARR11(3)                        <--                --------->ZAT2                          <---------AHL20(1)                       <---                <---------ZAT2                          --------->ARR11(3)                       ----      <---------MYB46(3) <---------ARR11(3)            --------->YAB1                            ---- -------RAV1(1) <---------At4g35610             --------->bZIP60(1)           <---------YAB1     ---- -ANAC81        --------->At4g35610             <---------bZIP60(1)  <-----------GT1   --------->ICU4   gtggccaattgttgagttagctgacaatatttttttgaaatatatgtatgatgtcaaaaatattttattttttacaaattttcattgtaatattcaaatt  21667100                           <---------RVE1(1)                           <---------CCA1(1)                          --------->ARR11(3)                   --------->AHL20(2)                   <---------AHL20(2)                   --------->YAB1               <---------YAB1              <---------AHL20(2)       ----------->GT1    <---------ARR11(3) ----MYB46(1) --------->AHL20(1) ----MYB83 --------->AHL20(2)                  <---------YAB1          --------->YAB1 ------TOE2(3)--------->AHL20(2)         <---------YAB1         --------->ZAT14 ----->MYB59  <---------AHL20(1)       <---------ICU4           <-------TEIL <---------ICU4 ----->MYB46(2)<---------AHL20(2)      --------->YAB1       <---------------AtSPL8 ----->MYB111(1)--------->YAB1        --------->ICU4       ---------->DOF2<---------ICU4   aggtagagacagataatataataatatagatatttagaaaattatgattttcaatggaaatgaaagtacagactcatatttatgacatttgtttaaaata  21667200                                 >>>>>>>>>RAP2.2                               --------->ARR11(3)                           <---------AHL20(2)                           --------->AHL20(2)                          --------->ICU4                        --------->WOX13(1)                      <------NtERF2                     ------>NtERF2                    --------->ATERF1(2)                   <---------ANAC58                         --------->HSFB2a(2)                   <---------ANAC58                  <----------DOF2                         <-------       --------->AHL20(2) <---------ATHB12          <---------YAB1                           <-------     ----------->GT1<---------ATERF1(2)           <---------AHL20(2)   --------->YAB1       <-------- <------MYB46(1)  <---------At4g35610          <---------ICU4 --------->ANAC46  ---------->ID1 <------MYB83 <----------DOF2  <---------ARR11(3) <-----------GT1     --------->AHL20(2)   <---------ATHB12   agttggtatgtaaatacttttgctggcaattaatatctaaatttgtcagtaattacttttgtccagaccacaataaatattcgtctctatccaatccttg  21667300                                                                        <----------DOF2                                                                        <---------DAG2                                                                     --------->ANAC58                                                                   <---------ALFIN1                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 <---------DEAR3(2)                                                                 <---------ATERF1(1)                                                                <---------DEAR3(1)                     --------->TOE2(3)      --------->ZAT14     --------->DEAR3(1)                     --------->YAB1         <---------ZAT14     --------->ATERF1(2)               --------->ANAC58             <---------ZAT18     <---------ATERF1(2)               --------->ANAC46  --------->ANAC46               --------->RAP2.3(3)               --------->ANAC58  --------->bZIP60(1)            --------->RAP2.6(2)            ------             <---------ANAC55(2) <---------bZIP60(1)           --------->RAP2.6(3)            -------             --------->ANAC58    <---------TGA2(1)             <---------LBD16           <----------ID1  <---------ANAC46  ----------->GT1   <---------ALFIN1        ------->GAMYB             --------->RAP2.6(3) --ANAC58    --------->ANAC55(2) --------->TGA2(1)           --------->DEAR3(1)<---------MYB46(3) --- --ANAC58    --------->ANAC58 ----------->TGA1              >>>>>>>>>MYB2    <-------GAMYB    ------- -ICU4     <-----------GT1 <---------AHL20(2)         ---------->DOF2--------->ANAC58  --------->MYB52(1)   ctcttcgtgtttatcacgcgctatgttaatttatgacgacacacagttcacttcgttatagcaacgccggcacgcttttcgttgttggaaaacggcaaac  21667400                        <----------ID1                 --------->AHL20(2)            <---------AHL20(2)                       <-------TEIL                *TSS        --------->AHL20(2)                      ---------->DOF2                 <----------DOF2        <---------AHL20(2)                  <---------AHL20(2)                  <--------------------       --------->AHL20(2)   ---------->DOF2 --------->AHL20(2)                 <---------ICU4 ------>CBF --------->AHL20(1)             --------->AHL20(2)        <---------ARR11(3) -->ANAC58  <---------AHL20(1)       --------->HSFB2a(2)             --------->ARR11(3) ------>GLK1(2) --------->AHL20(2)   <---------HSFB2a(2)            --------->RVE1(1)               < -->ANAC58  --------->AHL20(2)    <----------DOF2--------->DAG2     --------->CCA1(1)  <----------DOF2   aatctgaaaattaataaaataaaaaaacgagaaaggcttttggaaattaataaagttcatcgaaatacaaatatctcttcatcttttctcttttgctcat  21667500                                                                    ================================HOX2a_HOX2a        --------->TOE2(3)          ------>ZmHOX2a(2)                ------>ZmHOX2a(1)  --------->ANAC46                <------ZmHOX2a(2)                --------->TOE2(3)  --------->LBD16        <---------ANAC46                       <---------ARR14(2) --------->HSFB2a(2)     <---------ANAC58               <---------TOE2(3) <----------DOF2           - <---------HSFB2a(2)     <---------ANAC58               <---------TOE1(3) <---------DAG2      <------ ----ANAC81           <---------ANAC58         ----------->GT1  --------->ARR14(2)           <------- ---------LBD16       <---------ANAC58        ----------->GT1  <---------CCA1(2)             ------>ZmHOX2a(2)   ttcccagaaacctttgtttcatttgcttcgtgtgcgatcgcgagaacaagggaaaattagggtttatatcctcaagctttttcgaacaccattgatcgtt  21667600     --------->ARR11(3)     <---------GLK1(2)                      --------->ARR11(3)     <---------ARR11(3)          --------->ALFIN1              <---------ANAC46   <---------TOE2(3)            --------->ARR11(3)             ----------->GT1 ----->ZmHOX2a(2)             <---------TOE1(3)        <---------AtLEC2 -GAMYB        --------->HSFB2a(2)          <---------ARR11(3)<------NtERF2 --MYB46(3)    <---------HSFB2a(2)         <---------CCA1(2)----------->TGA1           ------>ZmHOX2a(1)   gatctaagatttttcttctagtcgagtttcttaaggtctggcttcatatctctctgtgcatggtgtcgttaaatctatgcagcgatgtcctgttcgattt  21667700                   --------->ATHB12                   <---------ICU4                  <---------YAB1                  --------->ICU4                                 <---------ZAT6                  <---------ATHB12                           <----------DOF2                 <---------TOE2(3)                         <---------ZAT2           ----------->GT1                                 --------->At4g35610     <----------DOF2                  <----------DOF2      <---------At4g35610    <---------ANAC58           <---------MYB46(3)          --------->ZAT2     <---------YAB1    <---------ANAC58      <---------ZAT18        <---------GLK1(2)  <-----------GT1      ----------->GT1   cattttgcttctagggtttaatgatttgtgcatttgttcgttttagggaacgattcttctcagctttgtgttacttcatcgtgattttgttttgttacta  21667800                                                --------->GLK1(2)                                  <---------TOE2(3)                                  <---------TOE1(3)                              --------->ZAT2   --------->ARR11(3)                              <---------At4g35610                              --------->At4g35610                     --------->KAN4(2)         <---------GLK1(2)                    <---------KAN4(1)          --------->ARR14(2)                    --------->KAN4(1)          <---------ARR14(2)                  <---------GLK1(2)            <---------ARR11(3)       --------->HSFB2a(2)   cgagtcgtttctatttcttagattattcgattagctgaggttttttgaagattcttctacagataactacttctctcgaatcgatttgcatttgttcttc  21667900                                                                                                    -                                                                                                    <                                                                                                 <---                                                <---------At4g35610                            <-----                                                --------->At4g35610                         <--------                        <----------DOF2    <-------TEIL                                     <--------                  --------->WRKY38(1)     --------->AtLEC2               ------->TEIL      --------->ICU4               <---------MYB46(3)<---------CCA1(2)             <---------TOE2(3)           --------->AHL20(2)   atttttagtatttggatttgttgactctttctctcatttcttacatgcatagctgcaacttatttatggaaaacgaacttgttcgaactgatatttatta  21668000  Previous    Next  AGI:  At3g58570.1    Description:  DEAD box RNA helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 52 (RH52) [Arabidopsis Thaliana] (GB:Q9M2F9); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] (TAIR:AT3G58510.2); similar to DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to hypothetical protein OsI_035463 [Oryza sativa (indica cultivar-group)] (GB:EAY81504.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78578.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22046.1); contains InterP Range:  from: 21667481    to: 21671509    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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