Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------YAB1                         <---------AHL20(2)                       <---------AHL20(2) -------->HAHB4                      --------->AHL20(1) <---------ATHB12              ----------->GT1                      <---------AHL20(1) --------->ICU4               ------->TEIL         <---------AHL20(2)<---------AHL20(2)                      <---------YAB1                   - --AHL20(2)   ----------->HVH21         <---------TOE2(3)   <---------YAB1                      ----- >AHL20(2)  --------->ANAC55(2)        --------->YAB1    <---------AHL20(2)           --------->ATHB12   tttgaccaaaatttatgtgacatatatatttttattctctctaatgatgcatactaaaatttatgaacgatgaatgtaaaatacaaattgatttgctcct  21650600                                               <-----------GT1                                           <---------AHL20(2)                                           --------->ATHB51                                           -------->HAHB4                                           -------->ATHB1                                           --------->ATHB12        <---------AHL20(2)                 <---------ICU4        <---------AHL20(1)                <---------YAB1                           --------->YAB1        --------->AHL20(2)                <---------ATHB12                   --------->YAB1        --------->AHL20(1)                <---------ATHB51                   --------->AHL20(2)       <---------AHL20(2)              ------------>ATHB5                  --------->AHL20(1)       --------->AHL20(2)        <---------GLK1(1)                         --------->AHL20(2)       - -------->AtLEC2         ---------->DOF2  --------->ICU4                  --------->YAB1          <-- ->ZmHOX2a(1) <-----------GT1    --------->GLK1(1)      <---------YAB1  --------->AHL20(2)     <-----   tcatgaaaaataaatttaaccaaaaaaaaaagaagaaatctctaattattgacaattcatgagagtccgaacataaaaataatattcaaaatataggttc  21650700                 <---------------AGL15                                                    <---------AHL20(2)                 --------------->AGL15                                                    --------->AHL20(2)     --------->CCA1(2)                                                                   --------->AHL20(2)    <---------ARR11(3)                       <---------DAG2                              <---------AHL20(2)    --------->ARR11(3)       --------->AHL20(2)                                     <-------TEIL --------->DOF2 ----------------->AGL2       <----------DOF2                       --------->CCA1(2) -------YAB1    <-----------------AGL3 --------------->AtSPL8                   --------->MYB59 --TEIL <---------TOE2(3)    <---------AHL20(2)     <-----------GT1         <---------TOE2(3)   atgaaagatttagattactctatttttggaaataaatatggtttgaacttttttttacatataagttgaatcgtttttaagttagatacaattaaattca  21650800                                                     --------->ATHB12                                                     -------->HAHB4                                                     -------->ATHB1                                                     --------->ATHB51                                                     <---------ICU4                                                     <---------AHL20(2)                                                    <---------ATHB51                                                    --------->ICU4                                                    <---------YAB1                                                  --------->YAB1                                                  <--------HAHB4                                                  <--------ATHB1                                                  <---------ICU4                                                  --------->ATHB51                        --------->CCA1(2)        <---------ATHB12                                   -            <---------TOE2(3)                    --------->AHL20(2)                          --------           ---------->DOF2    ----------->GT1    --------->ICU4                              <-------        --------->YAB1 <---------ARR11(3)        <---------ATHB51                            <-------  <-----------GT1      --------->ARR11(3)    --------->LBD16                       <---------YAB1   <   gaataaacaattttaaagttctaaagatttaagtgtaaatttgtttccccaataattattgtatatatgtttttctcaaactcttatgagtgtatataat  21650900        <---------ATHB12    --------->AHL20(2)                       --------->YAB1 -------->ARR11(3)                          <---------YAB1             --------->ICU4 ->AHL20(2)      --------->AHL20(2)       <---------ICU4         <---------TOE1(3) --AHL20(2)   --------->TOE2(3)          --------->ICU4          <---------TOE2(3)                 <- --YAB1 ------------>CBF      --------->ANAC58               <---------ANAC58        <-----------GT1 ---------ARR11(3)            --------->ANAC58         *TSS  <---------ANAC58     --------->YAB1 <---   tagattttaaatcaattcttaaaatataaaacaagctaatctcattatcataccatatttttggcttaaggtcattttgaagattaataacatgtctatt  21651000                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <------MYB83                                                                          <---------ANAC58                                                                          <------MYB46(1)                                                                         <---------MYB46(3)                                                                       <---------MYB52(1)                                                                <---------DAG2                                                                <----------DOF2                      ----------->GT1                      <---------ANAC58   <---------DOF5.7(2)                 --------->HSFB2a(2)                       <---------ANAC58  <---------WRKY38(1)                 <---------HSFB2a(2)                   --------->LBD16<-------GAMYB              <---------ARR14(2)                      --------->LBD16<---------ANAC58        <---------ANAC58                             <---------LBD16 <---------ANAC58    <---------MYB52(1)        <---------ANAC58                       <-----------GT1 <---------ANAC58         <-------GAMYB   -------------->OsCBT                      <-----------GT1   <---------ANAC58      --------->MYB52(1) ----------GT1--------->ARR14(2)       <---------TOE1(3)  --------->ZAT2 --------->MYB55(2) ------AHL20(2)<------ZmHOX2a(2)       <---------TOE2(3)  <---------ZAT2<---------MYB55(1)         --   ttatcgcgttgtgtccgatccagaaggtaaacatcgaatttagggtttttctctcccccgagcttgcttttccgttgggtgaacgactaccgttgatttt  21651100                                                          --------->ARR14(2)                                                          <---------ARR11(3)            <---------CCA1(2)                                                          <---------ARR14(2)         --------->TOE2(3)                                                 <----------DOF2                   <---------TOE1(2)                                              <---------ARR14(2)                 --------->DEAR3(1)                                              --------->GLK1(2)                ------>NtERF2                 <---------ARR14(2)        <---------TOE1(3)                 <---------LBD16           <---------ARR14(2) ----------->HVH21<-------TEIL                <-----------GT1  <---------MYB52(1)  <---------GLK1(2)    <---------TOE2(3)  ------>ZmHOX2a(1)--------->LBD16 -------->ID1    --------->ARR14(2) <---------GLK1(2)    <---------CCA1(2) --------->ARR14(2)   cttcgtttttttggataccgattcgattctctctcaccgatttttgaggttctttctctatatcctctcgttttttgtttccgcctacgtttatctctcg  21651200                                           <---------ANAC58                                           <---------ANAC58                                <---------WOX13(1)                              --------->ATHB12                            ------>ZmHOX2a(1)                           --------->TOE2(3)                           <---------------AGL15                                          <---------YAB1                           --------->ANAC55(2)                                         --------->GLK1(2)                           --------------->AGL15                             <---------ANAC55(2)                          <-----------------AGL3                             <---------AtLEC2    <---------ZAT2        ----------------->AGL1                             <---------ANAC46    --------->At4g35610   ----------------->AGL3                             <---------ANAC55(1)    <---------At4g35610   <-----------------AGL2                             --------->ANAC55(2)    --------->ZAT2        <-----------------AGL1  <---------At4g35610        <---------ANAC58    <--- <---------ANAC58--------->STY1(2)         <---------ANAC46  <----------DOF2 <---------ANAC58    <--- <---------ANAC58<---------STY1(2)----------->GT1<---------TOE2(3)<<<<<<<<<TBF1   --------->CCA1(2)   atttcgagctgtatcaactagctagggttccttaattggtttatttcgtttgaggtgatactcctttcttcttctgtttgcgtgatacgattctaatttg  21651300                     <---------ANAC58                     <---------ANAC58                     <---------ANAC46                    <---------ZAT2            <---------SPL7                                                       ------>ZmHOX2a(1)           <---------ANAC58                                                    <---------ANAC58           <---------ANAC58                                                 <---------GLK1(1)      <---------ANAC58                                                 <---------LBD16      <---------ANAC58         <----------DOF2                    <---------ARR14(2) <---------ANAC58   --------->ZAT2                                --------->ARR14(2) <---------ANAC58<---------LBD16                                  <---------GLK1(2) ------ANAC58   <---------ANAC58                      <---------ARR14(2)    --------->GLK1(1) ------ANAC58   <---------ANAC58    <-----------GT1<--------P <---------LBD16  <---------ANAC58   cttgcttcgcttggcgttccctggctgggttctctttgtttctcttcgtcttggtagatttgatttcggattttgggggtttcctgcttatggagttcga  21651400                                                                         <---------TOE1(2)                                                               <------MYB46(1)                         --------->GLK1(1)  <---------At4g35610<------MYB83              <---------LBD16                      <---------YAB1 <---------ANAC58         --------->MYB59           <---------ANAC46            --------->At4g35610      <---------ANAC58   <---------------AGL15           <---------ANAC58            <---------ZAT2           <---------ANAC46  ==============================================            --------->ZAT2      --------->ATHB12       <-----------------AGL1           <---------ANAC58            <---------At4g35610<---------YAB1          <-----------------AG<---------GLK1(2) <-----------GT1    --------->YAB1<---------WOX13(1)  <-----------GT1   <-----------RAV1(2)   tttttacattacacagctgctattgtgatttctatgattgcgtttgtgctaactattgacctatttggtatttgccaggttctctatttttcgtggataa  21651500  Previous    Next  AGI:  At3g58510.1    Description:  DEAD box RNA helicase, putative (RH11). Identical to DEAD-box ATP-dependent RNA helicase 11 (RH11) [Arabidopsis Thaliana] (GB:Q8LA13;GB:Q8W4P3;GB:Q9M2G5;GB:Q9ZS09); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G58570.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78578.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22046.1); similar to hypothetical protein OsJ_012456 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28973.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR0 Range:  from: 21650955    to: 21654772    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version