Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -             <---------DAG2                                                                         <   --------->AHL20(2) <---------ICU4                                                           ------   --------->YAB1     --------->ATHB51     ---------->DOF2                                  <--------HAHB4 -------->YAB1   <---------YAB1 <---------ARR11(3)                                          --------- -->HSFB2a(1)--------->TOE1(3)  --------->ARR11(3)     --------->LBD16         ----------->GT1<------ ---HSFB2a(1)--------->TOE2(3) --------->GLK1(1)     ------>ZmHOX2a(2) --------->YAB1      <---------YAB1 ---GT1   <-----------GT1      <---------GLK1(1) <---------YAB1       <---------YAB1   ----------->GT1   tctaataatattcaaccttatgaataatttcagaaatcttcaaacaaaagtatgatccagagtcacagttgtataatagaatggtgaaattgtattatta  21637000                                                                                      --------->MYB52(1)                                                                                     ------->GAMYB                                                                                    --------->MYB46(3) -------->TOE2(3)                                                                   <---------MYB52(2) ---------MYB59                                                                --------->HSFB2a(2) --->YAB1                      --------->MYB52(1)                              <---------HSFB2a(2) >YAB1                   ----------->RAV1(1)          <---------AHL20(2)   <----------DOF2        --- ---YAB1          <---------TOE2(3)      --------->At4g35610            <-----------GT1  --------->ATHB12   tacctaaaacttgaagaactaatgaaacaacacaaacagaggctgctataacctattttatgaagagaatgtttctactttctacaacgaacgattggcc  21637100                                                                     --------->GLK1(1)                                                                     <---------GLK1(1)         <---------ARR14(2)                                       --------->ICU4         --------->ARR14(2)                  <---------MYB59  <---------SPL7    --------->ANAC46 ------->TEIL                          --------->ZAT6       --------------->AtSPL3 ------>AtLEC2  <---------RAP2.6(3)  <-----------GT1   --------->CCA1(2)  <---------At4g35610   -----   atgaaactgaagttatgccgaattgaactgctaattagttaactctaccgaattaagagacggtcgtactgatttctgctatcagccatagctcgttctc  21637200                                                                                                 <---                                                                                                 ----                                                                    --------->WOX13(1)       ------>ZmHOX2a(2)                                                                 --------->ANAC58           <------ZmHOX2a(2)                                                                 --------->ANAC46          <---------ARR11(3)                                                                 --------->ANAC58          --------->ARR11(3)                       --------->ANAC58                 --------->ANAC58     ----------->GT1---------                 --------->AHL20(2)                     <---------TOE2(3)  --------->ZAT14 --------->ARR14(2)                 <---------AHL20(2)                     --------->ANAC58   --------->At4g35610   <---              >>>>>>>>>GT-2     --------->TOE2(3)    <------ZmHOX2a(2)     <---------ZAT14 <---------ARR14(2)  <------ZmHOX2a(1)    --------->ANAC58             <---------ARR11(3) --------->YAB1      <--------- ---->ZAT6  --------->At5g28300 --------->TOE1(3)   --------->ARR11(3)<---------ATHB12     <---------AGP1   actaggagtttctcggtaattaaacaagctaaaacctcaacaatttctgactaagatcaaggaatataagcaatcagagcagaaaattgaacagatctca  21637300                                                            <---------ANAC58                                                            <---------ANAC58                                                            <---------ANAC55(1)  --------->At5g28300                                   <---------ANAC58 ------ZAT2                                         <---------At4g35610 ----->ZAT2                                 ------>ZmHOX2a(1) >GLK1(1)            <---------YAB1       <---------ZAT18   <---------ANAC46               <--------- ------TGA1a      <------NtERF2      <---------ATHB12   <---------ANAC58       --------->YAB1 --ARR10       ------>NtERF2        --------->GLK1(2) <---------YAB1          <---------ATHB12    ---   cctcggtaacaatgttcggcctcataatcgaagtcgcgaatcagtcctcttctctgatgcttgcgtgtgtttgaatttcaatgaccatggaagaagacga  21637400                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <---------ARR14(2)                                          <-                                       --------->ARR14(2)                                   <--------                                       <---------ARR11(3)                                 --------->ARR14(2)                       ---------->DOF2 --------->ARR11(3)                                 <---------ARR14(2)                    --------->At5g28300--------->AGP1                           --------->DAG2    ---               <---------MYB55(2)      --------->ARR14(3)                      ---------->DOF2  <----               --------->MYB46(3)      <---------ARR14(3)            <---------YAB1    --------->HSFB2a(2) -ID1  <---------CCA1(2) *TSS     <---------HSFB2a(2)              <----------DOF2     <---------HSFB2a(2) ------>MYB46(3)<---------ALFIN1  --------->HSFB2a(2)  <---------LBD16     <---------HSFB2a(2)-------   acaactctcgtttctctcccaccgtaaaagactcttctcgagatcttaacttcttcgcccggtttagcactttgattctggtaaagtttgtagaaccggg  21637500                                                                --------->DAG2                                                            --------->YAB1                                                            --------->AHL20(2) --------SPL7                                        --------->ANAC46 -LBD16                                              --------->ANAC58                             <-- ------>ETT(1)                  --------->TOE2(3)    --------->ANAC58                             --- -------HVH21      --------->At4g35610      <---------CCA1(2)  ---------->DOF2        --------->AHL20(2) -->LBD16 <----------DOF2      --------->YAB1       ------>ZmHOX2a(1)                 <---------AHL20(2)   tcggaccaaaaactttttattcgctgagagcaaacatcaatatttcatctcttcctcgcaaattataaagttgcaacggattgaataattttttgtgatg  21637600                                                                        ----------->GT1               --------->ICU4                                          <---------TOE2(3)           <-         --------->SPL7                                               <---------ICU4             ----        <---------MYB52(1)                                         --------->YAB1               <----       --------->LBD16                                            <---------YAB1                -----      <---------ANAC46                      ----------->GT1     --------->YAB1                 ------      --------->ANAC55(2)                  --------->MYB59     <---------YAB1                  ------      <---------ANAC58                <---------ICU4        --------->GLK1(2)                  ------      <---------ANAC55(2)           <-----------------AG   --------->ARR11(3)                  <-----      <---------ANAC55(1)         --------->AHL20(2)       <---------ARR11(3)                  <-----      <---------ANAC58 --------->YAB1<---------ATHB12    <---------TOE2(3)                     ------ -------At4g35610     <-------TEIL<---------AHL20(2)     ----------->ARR10  ---------->DOF2   <------ ------>At4g35610 <---------YAB1 <---------ATHB12  --------->ARR11(3)--------->ICU4          --------   agctaattccgtatgtcatgttgattcatgatgcaataaatcattttggtaaatatgttgagattttgataataatgtaaaagtatatcagacttgagat  21637700  <-------GAMYB <---------MYB46(3) --------LBD16 -->ZmHOX2a(2) --ZmHOX2a(2) ---->CCA1(2) --->ARR14(2)                                                                <---------TGA1a --->ARR11(3)           --------->ATHB12                                     --------->TGA1a       -- --->ARR14(3)  <-------TEIL                                               ------->GAMYB           --- ----ARR11(3) --------->CCA1(2)         <-----------HVH21                 =============MYC_MYB  ----- ----ARR14(2)--------->ARR11(3)        --------->bZIP60(1)               <---------ALFIN1       <---- --->AGP1    <---------ARR14(2)        <---------bZIP60(1)        --------->RVE1(1)             ===== ---GLK1(1)  --------->ARR14(2)       --------->MYB59             --------->CCA1(1)             <---- --->ARR10   <---------ARR11(3) ---------->DOF2          --------->YAB1----------->RAV1(1) <---------ZAT6   ctgcggttgcaacaagatacagagaacgattgaacaaagtgaggtcaccaagagaacattgatgaaaaatatccaacacacatgagccgatgagtgttcc  21637800                                                           <---------MYB46(3)                                                           <------MYB83                                                           <------MYB46(1)                                                   --------->TOE1(2)                                                  <---------TGA1a                                                  <---------At4g35610       --------->HSFB2a(1)                        --------->At4g35610 ----------->RAV1(1)                              ===============================================MYC_MYB ---->NtERF2                                      --------->TGA1a                        --------->ANAC46 ------>ANAC46            <------ZmHOX2a(1)       --------->O2                           ------->GAMYB ------>RAV1(2) --------->At4g35610           <---------ALFIN1                        <-----------GT1 -----ANAC58    --------->LBD16   <---------ANAC58<---------O2      <-------TEIL      --------->MYB52(1) ============RAV<---------At4g35610          --------->ANAC46     <---------------------WRI1 -----ANAC58 ------>ZmHOX2a(1)    <---------ANAC58----------->RAV1(2)    <-----------TGA1============   ctgccacaaatgttcctccgctgctagaggataagggcttgaaatgccagacacctgagattggttaaggcgcatcgtcataagaaattaacagcaacta  21637900  Previous    Next  AGI:  At3g58460.1    Description:  rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein. Identical to Uncharacterized protein At3g58460 [Arabidopsis Thaliana] (GB:Q8LB17;GB:Q8L7A1;GB:Q9M2H0); similar to rhomboid family protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G17611.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39868.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain Ubiqui Range:  from: 21634156    to: 21637425    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58470.1    Description:  similar to Os03g0749900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051279.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56592.1); contains domain PTHR13200 (PTHR13200) Range:  from: 21637648    to: 21639546    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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