Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <-----------HVH21                                                                             --------->ZAT6                                                                            <---------ZAT18                               <---------MYB46(3)                           --------->ZAT14                       <-------TEIL                                       <---------ZAT14                    ----------->GT1                                       <---------ZAT18                   --------------->AtSPL8                                 --------->ZAT14                   <---------------AtSPL8                                 --------->ZAT18                ------->TEIL   <-----------RAV1(1)      --------->At4g35610 <---------ZAT14                --------->ARR14(2)                  <---------ALFIN1    --------------->AtSPL8                --------->GLK1(2)           ------>ZmHOX2a(1)           <---------------AtSPL8   <--- --------TOE1(2)<---------ARR14(2)    <------ZmHOX2a(2) <---------At4g35610 --------->ZAT18   ------- --->ZmHOX2a(1)<---------ARR14(1)     =============HOX2a_HOX2a   --------->AHL20(2)    ----------->GT1   ctagtttagagaaaatcgaatctggtacattatttgttggatcatcctctctcaccacatctgaaaattcaataagtgtacactaaaaaatgtcaaatat  21543100                                                                                            <--------                                                                                      ------>NtERF2                                                                                   <---------ATERF1(1)                                                                                   ------>NtERF2                                                                                  --------->ANAC46 --                                                                                  --------->O2   ----                                                                                  --------->ANAC58---                                                  <---------ARR11(1)              --------->DEAR3(1)                                                  --------->GLK1(2)               --------->bZIP60(1)                                                  ------->TEIL                    <---------bZIP60(1)                --------->ZAT18                  <---------ARR14(1)               --------->ANAC58---   <----------DOF2                           --------->GLK1(2) ----------------->AGL3--------->DEAR3(1) --------GT1  <-------PIF5           <----------DOF2          ------->TEIL        --------->bZIP60(2) -->YAB1      ------->PIF5    ------->TEIL<---------TOE2(3)<---------MYB52(2)   <---------ATERF1(1)<-   aacttcttttggagcaagtgcgatgttttatgaacttcacttttaagaatcgaatctaagaacgaaccatttctagcgattgcgacgccaccaatatcaa  21543200                                                      <---------------------WRI1                                                   <---------DEAR3(1)                                                  <---------LBD16                                                  <------NtERF2 <----------ID1                     <---------HSFB2a(1)          --------->ATERF1(1)              <--------P   ------>ZmHOX2a(1)     <---------RAP2.3(1)            <---------ANAC58                    <---------RAP2.3(2)       --------->ATHB12   --------->TOE2(3)     <---------DEAR3(1) -ARR11(3)  <---------ANAC58         --------->ALFIN1<------NtERF2 ------->At4g35610   <---------HSFC1(2)        --------->At4g35610 ----->MYB46(3) --------->DEAR3(2) <---------ANAC46<---------ANAC46 ---->GAMYB<---------MYB46(3)     <---------TOE2(3)--------->ALFIN1 -------->RAV1(1)    --------->HSFB2a(1)       <---------At4g35610    --------->MYB52(1)          <-- --------At4g35610   --------->HSFC1(2) <---------ANAC46<------ZmHOX2a(1)    --------->YAB1       <--   cagcagagacgattgggtagcgacgcttcctcattttaggtggagagtaagcggcggaggaagaaaacgaagaaacgaatgaaaatcgtttgaagccatt  21543300                                                                          <------MYB83                                                                          <------MYB46(1)                                                                          <---------ANAC46                                             ----------->GT1             --------->MYB46(2)                                         --------->ZAT14                 --------->MYB111(1)                                         --------->ZAT18                 --------->MYB55(2)                                         <---------ZAT14                 <---------AtMYB61      <----                                    --------->ZAT18                      --------->MYB52(2)  --------                                    <---------ZAT18                      --------->MYB111(2)<--------                                    --------->ZAT14           <---------ANAC58         --------->ANAC58             <---------LBD16   <---------ARR11(3)             <---------ANAC58         --------->ANAC58 -------ANAC58                 --------->ARR11(3)      <-----------HVH21 --------->MYB59    --------- -------ANAC58   <---------DEAR3(1) <---------ZAT14--------->MYB52(1)   <---------MYB55(1)  <--------   gctcgagagaagagctacggaggctcgactgaagatagtggactgaactgagaaaacggtcatagcgtctcgagttaggtggtatacttaagcaaattct  21543400                                                                            <---------At4g35610                                                                           ------>NtERF2                                                                           <---------RAP2.3(1)                                                                           <---------ERF1                                                                          <---------RAP2.6(2)                                                                          <---------RRTF1(3)                                                                          <---------RAP2.3(3)                                                                          <---------ATERF1(2)                                                                          --------->ATERF1(2)                                                                          <---------RRTF1(2)                                                                          <---------ANAC46                                                                          <---------DEAR3(1)                                                                          <---------RAP2.3(2)                                                                          <---------DREB2C(2)                                                                         --------->RAP2.6(3)                                                                         <---------LBD16                                                                     <-------GAMYB                                                                    <---------MYB46(3)                                                                 ------>NtERF2                                                                 <---------ERF1                                                                 <---------RAP2.3(1)                                                                 <---------DEAR4(2)                                                                 <---------ATERF1(1)                                                                 <---------ORA47(2)                                                                --------->DEAR3(1)                                                                <---------ANAC46                                                                --------->ATERF1(2)                                                                <---------RAP2.3(3)                                                                <---------RAP2.3(2)                                                                <---------DEAR3(1)                                                                <---------ATERF1(2)                                                               <---------ABI4(1)                                                               <------NtERF2<-------GAMYB                                                               --------->ATERF1(1)                                                               ------>NtERF2--------->At4g35610                                                              <---------RAP2.3(1)                                                              <---------ERF1<------NtERF2                                                              <---------RRTF1(1)                          --------->DEAR3(1)                  <---------ATERF1(1)                       <---------ALFIN1                      <---------RAP2.6(2)                      --------->MYB46(3)                     <---------RAP2.3(3)                --------->ANAC58                             <---------RRTF1(2)                --------->ANAC58                             <---------RAP2.3(2)                <---------ANAC55(2)                          <---------RRTF1(3)               <---------At5g28300                           <---------ANAC58                     <--               --------->RAP2.6(3)                           <---------ANAC46                     <-- -----YAB1     <---------LBD16                               <---------DEAR3(1)                   --- ->GLK1(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ANAC58                     --- -ARR14(2)    --------->MYB52(1)               <---------At4g35610<------NtERF2  ---------->DOF2  --- >ARR14(2)   --------->ARR14(2)                --------->At4g35610--------->ATERF1(1)     <------ZmHOX2a(1) -GLK1(2)    <---------ARR14(2) <---------REM1(1)           <---------LBD16<---------MYB46(3)--------   gagagtttgacagaagttacggcaaacaccgtcgatgtagaacggaggccgatgaagaagattgcggcggcgattggcggctgaaaagagaaggagagaa  21543500                             <---------YAB1                      ===============================MYC_MYB                      =============================MYC_MYB                      <---------bZIP60(2)                      --------->O2                      --------->ANAC55(2)                      <---------TGA1a                      <---------O2                      <---------ANAC55(1)                      <---------ANAC58                      <---------ANAC46                      <---------ANAC58                      <---------ANAC55(2)                      --------->TGA1a                     ----------->STF1                     ----------->bZIP910(1)                    <---------TGA2(2)             <------ZmHOX2a(1)                                                               --------         <---------ANAC46<-----------HVH21                                                   -------- -------ARR14(2)   ----------->HVH21             *TSS                                      <---------ALFIN1 -------ARR11(3)   ----------->TGA1           ----------->GT1                        <-----------GT1 ------>ARR11(3) --------->At4g35610          <------MYB83  <------------CBF       --------->YAB1<--- ------>ARR14(2) --------->CCA1(2)            <------MYB46(1)                     <---------YAB1 ---- ------>GLK1(2)  <---------At4g35610        <--------P<---------YAB1           <---------YAB1-------- --->GT1 <---------TOE1(1)   --------->ICU4<-------GAMYB <---------WOX13(1)  <-----------GT1---------   aatctccgattacgaggagagatgacgtgtcatgagtagcagtagggttggaaattttgatggattgaatccatcgattttactattatacccctacgct  21543600                                                      ------->TEIL                                                    <---------ZAT18                                                 <------------CBF                                              <---------ANAC55(2)                                              --------->ANAC55(2)                                              <------MYB46(1)                                              <------MYB83    <------------CBF                         <---------TOE2(3) ->ANAC58                              --------------->AGL15                                      <-- ->ANAC46                              <---------------AGL15                                     ---- ------ZAT14 <------------CBF          ------>ZmHOX2a(1)                                       <----- ----->ZAT14<---------ICU4            --------->TOE2(3)                                       <------ ->ANAC58  --------->ICU4             --------------->AGL15                <---------YAB1 --------->TOE2(3) >SPL7----------->GT1         <---------YAB1 --------->MYB59    <---------YAB1         <---------GLK1(1)   aaactgaattgtaaaaattgcaaatggaacttatgtttatcctaaattaggtattgcaccttgatgtttattgttttctgattttgttgaaatctcaaat  21543700                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                       <---------TOE1(3)          --------->YAB1                                                               <---------TOE2(3)   <---------WRKY18(1)                                                                 <---------YAB1 -------YAB1                                    <---------LBD16                      --------->YAB1-- ----->TOE2(3)  <----------DOF2          --------->AHL20(2) <----------DOF2          <---------ICU4<- ------ARR10 <---------ARR11(3)   <---------WRKY18(1) --------->MYB46(3)            --------->ICU4<-- ---CCA1(2)  --------->ARR11(3)   <-----------GT1  <------ZmHOX2a(1)        --------->GLK1(2)     ---   cttattgaccaataagagctttctacataaacttattgaccaattcaatatcaggaacaactctttcaatgtaagaagaatttggaattatggtttatga  21543800              --------->ZAT14              <---------At4g35610              <---------ZAT14           --------->At4g35610 -------->ARR11(3) ---------ARR11(3) ------->RVE1(1)                                                 --------->AHL20(2) --------GLK1(1)                                                 <---------AHL20(2)                 < ------->GLK1(1)                                        ---------->DOF2                  --------->ARR11(3) --------RVE1(1)                                     --------->ANAC58        ---------->DOF2<-------- -------ARR11(3)              ----------->GT1        --------->ANAC58   <----------DOF2  <---------ARR11(3) ------>ARR11(3)----------->GT1                      --------->ANAC46   --------------->AGL15   <----   gatatctcttctcttctgcagttaaacttatctggttatatcgaaaactatctacaagtaaagctaaaaaaatgctttgtaaagaaacagacatctttga  21543900                                    --------->At4g35610                                    <---------At4g35610                               <---------ANAC58                                    <---------ZAT2                     --------->ANAC58     ---------->ID1                 --------->ZAT2    ------->MYC3     --------->ANAC58     <-------- ----------DOF2         <----------DOF2               <-------MYC3--------->ANAC58    <---------ANAC58 --DOF2                 <---------DAG2        --------->YAB1      --------->ANAC58    <---------ANAC46 -----TOE2(3)      <---------At4g35610       <---------YAB1     ---------->DOF2 ------>ZmHOX2a(1)   ggcttttgtttttttaagctctgctactttattttctcagcagcattctgataacacatgtagttgtaaagccaagctaatcctcttggcttagatacct  21544000  Previous    Next  AGI:  At3g58140.1    Description:  phenylalanyl-tRNA synthetase class IIc family protein. similar to phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G39280.1); similar to Os12g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066926.1); similar to phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98813.1); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc, mitochondrial; (InterPro:IPR004530); contains InterPro domain Aminoacyl-tRNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Phenylalanyl-tRNA syn Range:  from: 21540708    to: 21543549    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58150.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69824.1); contains InterPro domain Optic atrophy 3-like (InterPro:IPR010754) Range:  from: 21543790    to: 21545066    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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