Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       ------->GAMYB         <---------GLK1(1)                                                          <------------MYB.PH3(2)         --------->GLK1(1)                                                          <---------MYB52(2)  --------->DAG2                                                                    --------->MYB46(3) --------->DAG2                                                          <---------ZAT6  <----------DOF2 --------->DOF2                   <----------DOF2              <---------At4g35610----------->RAV1(1) ----->GT1  --------->TOE1(2)    --------->TOE2(3)         <----------DOF2       <----------ID1     -   aaaaaagggggaaacctgctacattgttgacaaaacctttgatgaagaccagagacaatgactttagatgatttagagtgaatgcaacaaactttgtgtc  21456600                                                    <---------ZAT2                                                    --------->ZAT2                                <--                                                   ------>NtERF2                                  <--                           <-------TEIL      --------->O2                                     <------                          <------ZmHOX2a(2)  <---------O2                                    <-------                       ----------->ARR10   <---------ALFIN1                                 ---------                    <---------ANAC58     ------>MYB46(1)                                    <--------                    <---------ANAC58  <---------HSFB2a(1)   --------->ALFIN1               <---------MYB52(1)              <---------TOE2(3)       --------->HSFB2a(1)  --------->LBD16                --------->LBD16              <---------YAB1          <---------HSFC1(2)  --------->DEAR3(1)        ----------->HVH21          <----------DOF2--------->AGP1  ------>MYB83<---------ALFIN1  <---------SPL7   <---------LBD16 ---------->GT1     <---------ANAC46  --------->HSFC1(2)  <---------ANAC46  --------->MYB52(1)<------   tcgagtaataagctttaacattgcttagatccattctacaaccttccacttggcacctcgccgtggtagacgacttacgaacggtattgacccggttctt  21456700                   =================HOX2a_HOX2a                   ==================HOX2a_HOX2a                   ------>ZmHOX2a(1)             =============HOX2a_HOX2a             ------>ZmHOX2a(2)    ----------->HVH21         --------->LBD16    <---------AGP1       ------>ZmHOX2a(2)    --------->ARR11(3)       ===================HOX2a_HOX2a     ----------->RAV1(2)       <---------LBD16      <---------ARR14(2)      <------ZmHOX2a(2)     <---------ARR11(3)      ====================HOX2a_HOX2a   ------>MYB83                                              ---     --------->ARR14(2)     --------->ARR14(2)                                          ----------->RAV1(2)     <---------ARR14(2)     <---------ARR14(3)                                          --------->At4g35610  --------->HSFB2a(2)       --------->ARR14(3)                                          --------->O2-  <---------HSFB2a(2)      <---------CCA1(2)         <---------ALFIN1                   --------->ZAT2 -------ANAC58     <---------HSFB2a(2)  ------>MYB46(1)                                --------->MYB52(1) -------ANAC58     --------->HSFB2a(2)<---------MYB59--------->AtMYB61                <---------ALFIN1 ---ANAC58   <-------TEIL ----------->ARR10--------->TOE2(2)                         --------->MYB46(3) --MYB46(3) ==============HOX2a_HOX2a --------->AtMYB61      <---------ZAT14       <---------ARR14(2) >ARR14(2)  <------ZmHOX2a(2)   --------->At4g35610 --------->MYB46(3)             --------->ARR14(2) -ARR14(2) --------->ARR14(2) ------>ZmHOX2a(2)  <---------ZAT18                >>>>>>>>>TBF1    ---- ---ANAC58 <---------ARR14(2)<------ZmHOX2a(2)   --------->ZAT18       <---------DEAR3(1) -----------   gcttctggatccggatccatcctcgaagtagatcttctgaccaaacctgagtccaccactgagtgaagaagactcggtggaagaagaaccacctgactcg  21456800                                                                        <---------At4g35610                                                                        --------->At4g35610                                                                     <---------At4g35610                                     <---------ANAC58              <---------ANAC58                            <---------YAB1                         <---------ANAC58 -------->RAV1(2)           <---------TOE2(3)                     <---------HSFC1(2) ---------->HVH21           <---------TOE1(3)                     --------->HSFC1(2)     ------------ -->NtERF2                <---------ICU4  ------>ZmHOX2a(1)    --------->CCA1(2)         <----------DOF2 >HVH21          --------->MYB46(3)  <---------ANAC58     ---------->DOF2            <----------DOF2   gcctgacccgaacacattaacaactccattatggttttggcttcctcttactcagacagagaaagagatgcttctgctcatcactctctttctttctaag  21456900                                                                   <-----------RAV1(1)       <---------HSFB2a(2)                                         <---------REM1(1)       --------->HSFB2a(2)                                        --------->ARR11(3)      <---------LBD16                                      --------->ARR14(2) --------->ZAT14                                           <---------ARR14(2) <---------ZAT18                      ---------->DOF2      <---------ARR11(3)         --------->GLK1(2) <---------ZAT14           <------ZmHOX2a(1)               --------->ARR11(3)    ---------->DOF2 --------->WRI1     <------ZmHOX2a(1)<------ZmHOX2a(1)     <---------GLK1(2) <----------DOF2   tactgaactctggaaatagtaaggacggaggagaatagaggaaagaaaatgtggttttgcagattttagatgttgctatcttttaaagaatcagagagaa  21457000                                                                              --------->ANAC55(2)                                                                              <---------ANAC46                                                                              --------->O2                                                                              <---------ANAC55(1)                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                              <---------ANAC55(2)                                                                             <-------TEIL                                                                          <---------At4g35610                                                                          <---------ZAT2                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     --------->ANAC46                                                                     --------->bZIP60(2)                                                                  <---------ZAT18               <----                         --------->At4g35610               --------->ZAT6 --------->ZAT2       <-----                         --------->ZAT2                <---------WOX13(1) --------->At4g35610  <-----                         <---------At4g35610          <------------CBF----------->RAV1(1)      <-----             ---------->DOF2                --------->ANAC58      --------->ZAT18        <---------ANAC58            *TSS ---------->DOF2---------->DOF2      --------->ATHB12----------->HVH21   <---------ANAC58         ---------->DOF2--------->GLK1(2)   --------->ANAC58      <---------WRKY38(1) <-----------GT1   gagaagagagagaaagaaagaaagagaagctgacaaaagaagagacactcaagagtgattgacactagtccacgacagctacgtgtttttagcgtttgcg  21457100                                                                                    --------------->AtSPL3                                                                                    <---------------AtSPL8                  <---------AtMYB61                                       <-----------GT1         <--              <----------DOF2                                            <<<<<<<<<<GT-3b          ---         <------MYB83 <---------MYB46(3)                             <---------RVE1(1)           ----         <------MYB46(1)                                            --------->ARR11(3)           <---         <---------MYB46(3)                                        <------ZmHOX2a(1)<---------TOE2(3)     <---------MYB46(3)                                           ----------->GT1--------->DOF5.7(2)     <-----------RAV1(1)                                         <---------TOE2(3)  <---------TOE1(3) ------DOF2  <---------ANAC46                                <------ZmHOX2a(1)  <----------DOF2 ----- ----ANAC58  <---------ANAC58                        ---------->DOF2<---------ARR11(3)         ------ ----ANAC46  <---------ANAC58                --------->AHL20(2)  <---------TOE1(3) <---------DOF5.7(2) ----ANAC58 <-------TEIL           --------->At4g35610 --------->DAG2<---------CCA1(1)  <-------TEIL   ttttgggatgttggtgcgttttggtggtttttgtaacatctgaacaaataaacacaaaagggaggataaggatatttttcttctttaacgtacaaaatga  21457200                                                                       -------->HAHB4                                                                       --------->ATHB51                                                                       <---------AHL20(2)                                                                       --------->ATHB12                                                                       -------->ATHB1                                                                       <---------ICU4                                                                      <---------ATHB12                                                                      <---------YAB1       --------->ANAC46                                               --------->ICU4  ------>ZmHOX2a(1)                                                   <---------ATHB51  ===========================HOX2a_HOX2a                      <---------AHL20(2) --------->TOE2(3)                                           <---------AHL20(2) --------->TOE1(3)                                           --------->AHL20(2) -------ARR11(3)      <------ZmHOX2a(2)                <---------At4g35610 ------>ARR11(3)     <---------ARR14(2)         --------->GLK1(2)  <---------------AGL15 ----->GLK1(1)       <-----------HVH21          --------->ARR11(3) <---------YAB1 ------GLK1(1)       --------->ARR14(2)         <---------ARR11(3) --------------->AGL15 ---->ARR11(3)   <-----------------AGL1  ----------->GT1     <---------AHL20(1) --->YAB1        ----------------->AGL1 <---------TOE1(2)    --------->AHL20(1)          --------->ZAT6   tatccttaaacgagaccagaccagatcagggaacataactcccatgtaaaaatctacagctaatttattctaattattgtatactagttttatactacta  21457300               --------->AHL20(2)            --------->YAB1           ----------->GT1           <---------YAB1                                                                     <------         <---------ICU4                         ----------->GT1            <---------------AGL15         -------->HAHB4              <---------YAB1                       ===========================         --------->YAB1             <----------DOF2                       <-----------------AGL3        <---------ATHB12           ------>ZmHOX2a(2)              <------ZmHOX2a(2)          --------        --------->ICU4           <---------ARR11(3)              <---------ARR11(3)          <-------       <---------TOE2(3)         --------->ARR11(3)       <---------YAB1  ----------------->AGL3   aaatagtctaatgatgataaaatcacaaaactattgatctttattgtagtttgtaaaaatatgaatagatcacagacctataaatggatggctatttaac  21457400                     ---------->DOF2                    --------->AHL20(2)                    <---------AHL20(2)                --------------->AGL15       <-----------GT1                 --------->ATHB12 -----GT1       <---------YAB1   --------->MYB46(3)                                        --------->ARR14(2) ===============================MADS_MADS                                                  <---------ARR14(2) ->AHL20(2)     <---------------AGL15<----------DOF2                           <------ZmHOX2a(1) --AHL20(2)    ----------------->AGL3<---------DAG2          ---------->DOF2 <---------TOE2(3)   tacttctaaatactatttctaattaaagagaaacaacaactttattgctcatttttaaaattctaaagtagaaagaattgaggattatgggcagatagac  21457500  Previous    Next  AGI:  At3g57920.1    Description:  squamosa promoter-binding protein, putative. Identical to Squamosa promoter-binding-like protein 15 (SPL15) [Arabidopsis Thaliana] (GB:Q9M2Q6); similar to squamosa promoter-binding protein-like 9 (SPL9) [Arabidopsis thaliana] (TAIR:AT2G42200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23376.1); contains InterPro domain Transcription factor, SBP-box; (InterPro:IPR004333) Range:  from: 21455298    to: 21457012    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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