Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            ------>NtERF2        ---------->DOF2        ---------->ID1         --------->ZAT18      --------->YAB1     <----------DOF2                <----------DOF2      --------->MYB52(1)     <---------ATHB12 <---------ARR11(3)         <-----------GT1 ---->ZmHOX2a(1)    <---------AHL20(2)        --------->ARR11(3)        <-----------GT1 ------>TOE2(3)    --------->AHL20(2)     <---------YAB1               <---------AHL20(2) ------>TOE1(3)    <---------AHL20(2)   --------->CCA1(2)             --------->AHL20(2)   ccttaaacaagcggacaatatttaaattgcaatgaaagcgagttatgagttcttttggcctaaacttcccaattttatctctctttttcccactaatctt  21448800                                                                         -------->HAHB4                 ----------->HVH21                                       --------->YAB1              --------->ZAT6                                             <---------ICU4             <---------At5g28300                                        --------->ICU4            ---            --------->MYB52(1)                                          <---------ATHB51         <---       <---------YAB1                          --------->YAB1         ------>MYB83           <-------       <---------AHL20(2)            --------->ANAC55(2)              ------>MYB46(1) <---------ICU4       --------->AHL20(2)            <---------ANAC55(2)            --------->TOE2(3) --------->YAB1      --------->AHL20(2)            --------->MYB59 <-----------GT1 <---------MYB59  <---------YAB1      <---------AHL20(2)            <---------TOE2(2)       --------->YAB1           --------->ICU4     --------->YAB1                 <---------TOE2(3)       ----------->GT1<---------YAB1   <--------   ctaacaattttaattaacagtgacaacttacaagtacttaggtaaccaagtatatttccctattgtaaaacctaattatgagttgtgatgatcacctttt  21448900                                 <<<<<<<<<<<<<<<<<LFY                                 ----------->RAV1(1)                        >>>>>>>>>MYB98                       ------>MYB46(1)                     <---------MYB111(1) <----------DOF2     <---------MYB46(2) ------->ID1         <---------MYB59 --------GT1      <------ZmHOX2a(1)                 --------->TOE2(3) ---DOF2  ------->TEIL --------->MYB52(1)   --------->MYB52(1)                            <----------DOF2 -DAG2  <---------SPL7 ------>MYB83       <---------MYB59                                 ===========   ctccttttgacgaacgcttaggacctaacttattgcaacaatggcctaactaaaacttaaatgcgatttgcattcaattctcaaatgggcctctttagtt  21449000                     <---------ANAC55(2)                     <---------TGA1a                     <---------ANAC58                     --------->TGA1a                     <---------bZIP60(2)                     <---------ANAC46                     <---------ANAC58                     --------->ANAC55(2)                                              --------->ANAC58                     <---------O2                                                    <---------TOE2(2)                     <---------ANAC55(1)                                             <-------TEIL                     --------->O2                                                 <---------ANAC58                  ----------->TGA1                                    ---------->DOF2------->TEIL                  ----------->HVH21                               ------->GAMYB   <---------ANAC58                --------->At4g35610                              <---------MYB52(2)  --------->SPL7 -                <---------At4g35610                              --------->MYB46(3)  <---------TOE1(2)                ----------->RAV1(2)  <------ZmHOX2a(2)           <---------MYB55(2)<---------SPL7  <-             <-------TEIL          --------->At4g35610         --------->MYB52(1)--------------->AtSPL3            <---------MYB52(1)     <---------At4g35610----------->GT1--------->AtMYB61--------->ANAC58       <-----------GT1  <-----------HVH21 ----------->GT1     --------->TOE1(2)  <---------------AtSPL3 ==============================bZIP_DOF  <---------TOE2(3)--------->GLK1(1)--------->MYB52(1)     <--   aacatgttatctccgttcatctgacgtgtcatagctcagatcaaaggttaatctactcgtaaatccaacgaccaaagaaacgaagcgtacgttactaaca  21449100       --------->ANAC58       --------->ANAC58       --------->ANAC46    --------->ZAT14                                                      --------->CCA1(2)    --------->ZAT18                                                     <---------ARR14(3)    <---------ZAT18                                                     --------->ARR14(2)    <-------TEIL                                                        --------->ARR14(3)  ------->PIF4                                                          <---------AGP1   --------->DEAR3(1)  <-------MYC3                                                  ---------->DOF2          --------->MYB46(3)  ------->MYC3                                           <-----------TGA1<------ZmHOX2a(2)  ------->MYC4                                           <-----------HVH21------>ZmHOX2a(2)  ------->MYC2                                      --------->ATHB12    --------->AGP1  <---------LBD16  <-------MYC4                                      -------->HAHB4      <---------ARR11(3)-----------  <-------PIF4                                     <---------ATHB12     <---------ARR14(2)<---------SPL7  <-------PIF5                                     <---------YAB1       --------->ARR11(3)--------->LBD16  ------->PIF5    ------->GAMYB                --------->AHL20(2)     ----------->ARR10--------->MYB52(1)  <-------MYC2   --------->MYB46(3)           <---------ATHB12--------->MYB46(3)      --------->DEAR3(1) ----------->OsbHLH66                     ------------>CBF   --------->ANAC58         --------->AtMYB61 -----------OsbHLH66                     ------>ZmHOX2a(1)   --------->ANAC58   *TSS  <---------ALFIN1 -----TEIL     <-----------GT1 <---------At4g35610 --------->ICU4   ---------->DOF2  --------->MYB46(3)   tacacgtgcacgcactgtaaccatctctctctctgctcttctccttcaatgaaatgattcgtcacccaaagaaagatctgcaacttcaccaccggaccag  21449200                                                                                              -------                                                                                             <-------                                                                                 --------->AtMYB61                                                                                 --------->DEAR3(1)                                                                                 <---------ALFIN1                                                                                --------->MYB46(3)                                                                              --------->ANAC46-------                                                                             --------->MYB46(3)   ---                                                                           --------->YAB1    --------                                           --------->YAB1                 <---------ATHB12   --------                                           <---------ICU4                 --------->MYB46(3)---------                                          --------->ICU4                 ------>MYB83       ---------                                          <---------ATHB12               ------>MYB46(1) <---------At4g35610                                        --------->WOX13(1)              --------->WOX13(1)<---------ALFIN1                                      <---------ATHB12                 --------->AtMYB61 --------->At4g35610                               ----------->HVH21            <---------ARR11(3)<---------ALFIN1------- >HVH21                      --------->ANAC46<---------YAB1 --------->ARR11(3)--------->AtMYB61<-----   tctctctctatctcttctgtctctctacctcgcgcgacgaatcaatcatgactgaagaacaagacctcatcgaccaatcaccaccaccttcagcacccga  21449300                                                                                                  ---                                                                                                -----       ------>MYB46(1)                                                            <---------GLK1(2)     <---------MYB59                                                              <---------ARR14(2) ---->HVH21                                                                       --------->ARR14(2) --MYB55(2)                                                                     --------->LBD16 <---- -->ANAC46                <---------ARR14(2)          <----------DOF2       --------->ARR14(2)  ----- -------->RAV1(2)         --------->ARR14(2)    --------->ALFIN1            <---------ARR14(2)  ----- ->DEAR3(2)         --------->ARR14(2)          -------------->OsCBT      --------->LBD16       ----- ->MYB46(3)         ------->TEIL              <---------ANAC58         =============HOX2a_HOX2a <---- >ANAC58            <---------ARR14(2)        <---------ANAC58         ------>ZmHOX2a(1)     <------- >ANAC58         --------->ANAC58             <---------ANAC46 --------->ANAC58<---------HSFB2a(2)--- >GAMYB------>MYB83 --------->GLK1(2)      --------->ANAC46    --------->ANAC58--------->HSFB2a(2)--- ----ALFIN1      --------->ANAC58      --------->AtLEC2   --------->HSFB2a(2)<------ZmHOX2a(2) ------   ccctgaaccaaactcgagcacgaatccgaattcagtaatccatccaaggcgtgtgtctttcgagcacggactcctcccgatccagaaactcgttttcacc  21449400                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                              <------                                                                                             <-------                                                                                             <-------    <------ZmHOX2a(2)                                                                        --------   <---------ARR14(2)                                                             <------NtERF2------   --------->ARR14(2)                                                           --------->DEAR3(1) -- --->MYB83                                                         ------>ZmHOX2a(2)         -------- ---->MYB46(3)                                                   --------->ARR14(2)          <------- -----MYB55(2)             --------->YAB1                ------->GAMYB          ----------->HVH21<--- ---->DEAR3(1)           --------->AtLEC2              <---------At5g28300     --------->RAP2.3(1)<-- ---->DEAR4(1)           --------->ANAC58             <-----------GT1<---------At4g35610     -------- ------>HVH21            --------->ANAC58             --------->ARR14(2)     ------->GAMYB   -------- -----MYB46(2)          --------->WOX13(1)            --------->MYB52(1)    --------->MYB46(3)<------ZmHOX2a(2) ----GT1   --------->TOE2(3)                          <---------ARR14(2)<------NtERF2        <------- ----->P   --------->TOE1(3)   --------->GLK1(2)    <---------KAN4(2)--------->At4g35610     <------- --->MYB46(1)          ---------->DOF2     <---------RAP2.6(2)   <---------ARR14(2)         <-------- --->DEAR3(2)        <-----------HVH21  <---------ARR14(2)     <---------MYB46(3)------>NtERF2-------   gacccgatccaaaccttagcccctgtcaagcagaagctagccgatgcggcttcgaataaccgcgttggatcggctgcaatcgccgacgttctccagatct  21449500  ------>NtERF2 ----------->HVH21 --------->DEAR3(1) <---------ETT(2) -------->ATERF1(1) ---->NtERF2 --------ATERF1(1) ---GLK1(1) --AGP1 --ARR14(2) ->ARR14(3) >ZmHOX2a(2)                                      --------->LBD16 ------->LBD16                       <---------ANAC58 ->AGP1  <---------ANAC58            <---------ANAC58 --ARR14(3)                          <------MYB83<---------ANAC58 ------LBD16                         <------MYB46(1) -------DEAR3(1)                    <---------MYB46(3)                                             <- ->ARR11(3)                         --------->MYB52(2)                                         <----- ->ARR14(2)                         <---------DEAR3(1)                                        <------ ----ARR10                          --------->MYB46(2)                             <------ZmHOX2a(1) --ARR11(3)          <---------HSFB2a(2)         <---------ANAC58            ----------->RAV1(2) <--- -CCA1(2)<---------ANAC58         <---------MYB52(1)   ----------->HVH21   --------->ARR14(2) <------ -->GLK1(1)          --------->HSFB2a(2)<---------MYB46(3)                 <---------ARR14(2) <------   ccggcgaccatgcgcgtctcgttctcgagactctcggttcggtgcttcattccgagtctgaccctctggttcgggcgaaacctgaggaagttgattccgt  21449600                                                                                         <---------ANAC46                ====================HOX2a_HOX2a                                         <---------At4g35610              --------->ARR11(3)                                                        <------NtERF2              <---------ARR14(2)                                                       --------->MYB55(2)           --------->LBD16                                                             <---------MYB46(3)          <---------ANAC58                                                             ------>NtERF2         <---------LBD16                                                              --------->ALFIN1     --------->ARR14(2)                                                               <---------DEAR3(1)     <---------ARR14(2)                                                             <---------MYB46(3) <---------ZAT2 ------>ZmHOX2a(2)                                                  <---------DEAR3(1) --------->ZAT2=====================HOX2a_HOX2a                  --------->ANAC58 <------NtERF2 <---------At4g35610                                             --------->ANAC58 <---------At4g35610 --------->At4g35610                                           <------ZmHOX2a(1)  --------->At4g35610 -----NtERF2  --------->ARR14(2)                            ------>ZmHOX2a(1)  --------->LBD16 ------HVH21  <---------ARR11(3)                            <---------HSFB2a(2)--------->At4g35610 ---ANAC46<---------ANAC58                                  --------->HSFB2a(2)<---------At4g35610 ------DEAR3(1)<------ZmHOX2a(2)         --------->YAB1    --------->TOE1(2)  --------->ANAC46 ---ANAC58<---------ANAC46   ------>ZmHOX2a(1)         <---------ANAC58      <---------LBD16  ------- ---ANAC58<---------LBD16   --------------->AtSPL8     <---------ANAC58  <------ZmHOX2a(1)   <-------   cggagctgatttgcgggatcttattttgttcctgtacattcaatcgtataagaagttgcttcctaggacgcataaggactccgcagcggtggctgatgtt  21449700  Previous    Next  AGI:  At3g57890.1    Description:  tubulin-specific chaperone C-related. similar to tubulin-specific chaperone C-related [Arabidopsis thaliana] (TAIR:AT2G42230.2); similar to tubulin-specific chaperone C-related [Arabidopsis thaliana] (TAIR:AT2G42230.1); similar to Tubulin binding cofactor C [Medicago truncatula] (GB:ABN08645.1); similar to hypothetical protein OsJ_021120 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37637.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23370.1); contains InterPro domain Tubulin binding cofactor C (InterPro:IPR012945); contains InterPro domain CARP motif; (InterPro:IPR006599) Range:  from: 21449180    to: 21452998    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version