Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------>NtERF2                                                               --------->LBD16                                                              --------->DEAR3(1)                                                             <---------LBD16                                                           ------->GAMYB                                                           --------->DEAR3(1)                                                          --------->MYB46(3)                                                          --------->DEAR3(2)                                                          <---------MYB55(2)                                   --------->At4g35610--------->MYB46(3)                            <------MYB46(1)         <---------DOF5.7(2)                            <------MYB83          ----------->HVH21                           <---------AtMYB61      --------->DOF5.7(2)                <-----------HVH21                           --------->MYB111(1)   --------->LBD16       <---------LBD16                        <---------ANAC46   ---------->DOF2<------------AtMYB77  --------->DAG2                    <---------ANAC58    --------->ANAC58 ------->TEIL <---------LBD16<-----------TGA1 -------->ZAT14     <---------ANAC46    --------->ANAC58--------->MYB52(1)  <------MYB83 ---------ZAT14     <---------ANAC58    --------->ANAC46--------->ARR14(2)  ----------->GT1 ------->GT1   <---------ALFIN1    <---------At4g35610<---------MYB52(2)    <------MYB46(1) -->GLK1(2)--------->At4g35610--------->ALFIN1  <---------ANAC46<------NtERF2  ---------->DOF2    <--   agtgaaatggagaagctccactgcttgtgtaggtggaagctcaagcaaagccgtgaacgaaccgccggggttctcgggaggtaaagtcgtcactagttgc  21422200                                                                                            <--------                                                                  =====================HOX2a_HOX2a                                                                  ------>ZmHOX2a(2)         ---------                                                                 <------ZmHOX2a(2)         ==========                                                                 ======================HOX2a_HOX2a                                                                <---------AGP1             <---------                                                                <-----------ARR10          ----------                                                                --------->ARR11(3)         <-------TEIL                                                                --------->AGP1             ----------                                                                <---------ARR11(3)         ----------                                                                <---------ARR11(1)        <------ZmHOX2a(2)                                               --------->ANAC58 <---------ARR14(2)       <---------ARR14(2)                                               --------->ANAC58 --------->ARR14(2)       --------->AGP1                                             <---------ALFIN1  <---------CCA1(2)         --------->ARR14(2)                                            <------NtERF2      <---------ARR14(1)       --------->At4g35610                                           --------->LBD16    --------->LBD16           <---------At4g35610                                           ------>NtERF2    <---------LBD16         <-----------HVH21     <-----------TGA1                     --------->LBD16  --------->ABI4(1)    ------>ZmHOX2a(1)     <-----------HVH21                    --------->ANAC46 ------>NtERF2        =================HOX2a_HOX2a   <-------TEIL<---------REM1(1)         <---------LBD16  --------->DEAR3(1)--------->ARR14(2)    --- -------RAP2.6(3)                   <---------MYB46(3) <---------ALFIN1     <---------ARR14(2)  -----   cgaaattcgtcaccgagatgtagcgattcaaggcctattggttcccggcacggtccaacaccgccggatctagctccaaatcctccagtcagatccataa  21422300 --------->ARR14(2) <---------GLK1(2) <---------ARR14(2)                              ------>MYB46(1) -------AGL15       --------->HSFB2a(2)          ------>MYB83 ------>AGL15  <---------HSFB2a(1)             <---------------AGL15 ===============================================================MADS_MADS --------AGL3 --------->ARR11(3)               --------------->AGL15              ----------->RAV1(1) ------->AGL1 --------->ARR14(2)              ----------------->AGL2          --------->ANAC46 ------->AGL3--------->GLK1(1)        --------->ATHB51                        --------->ANAC58 ------->AGL2<---------GLK1(1) --------->ZAT6 ----------------->AGL3          --------->ANAC58 ------>ANAC46<---------ARR11(3)      --------->YAB1                    <-----------ARR10 --------->TOE2(3) ---->MYB52(1)<---------ARR14(2)     <---------ATHB12                  <---------CCA1(2)  --------->TOE1(3)   acggaaactcactggaaatcttcgaaaacaataacaccaataatcgaaaccaaattcagcaatttgtgtaatcaaatctcacgacaacaaaaccctaatt  21422400                                                                 ----------->GT1                                                                <---------------------WRI1                                                                <------NtERF2                                                                ------>NtERF2                                                               --------->LBD16                                                               <---------RAP2.3(1)                                                              <---------RAP2.6(2)                                                              <---------DEAR3(1)        --------->ALFIN1                                      <----------DOF2        <---------LBD16         --------->DAG2     ---------->DOF2        <---------ANAC46         ----------->GT1       ---------->DOF2   --------   gagcctccaaagagagcgagagagagacttgagtagaagacttttgtcagtaagcgagtaaaatgcggcgaaaaatagaaaggagagaaggtgggcaaca  21422500            --------->GLK1(1) <---------ANAC58                                                                    <----------DOF2 <---------ANAC58                                                               ---------->ID1    --- <---------RAP2.6(2) ------>ZmHOX2a(1)        <---------ANAC46       <------------------------ANAC81 --->RAV1(1)<---------GLK1(1)          --------->ARR11(3) ----------->GT1 <<<<<<<<<TBF1  *TSS   -----   atggcggtctgaagaaatccctccttcttctatagctcagagaacttggcgaagaaggaatagttattctctcttcttcttcgtcttctttctcaaatgt  21422600                                                             <---------ANAC58                                                             <---------ANAC58                                                  --------->At4g35610                                                  <---------At4g35610                                               <---------MYB52(1) <-------GAMYB                                              --------->TOE2(3)  ----------->GT1                                              --------->TOE1(3)  <---------MYB46(3)                                        --------->ANAC58   --------->ALFIN1                                        --------->ANAC58 <---------ANAC58           <---------MYB52(1)                                      ---------->DOF2    <---------ANAC46          <-----------HVH21                                    --------->ANAC58   --------->ZAT14        --------->ZAT18                                    --------->ANAC58   <---------ZAT14      --------->ANAC46       ---------->DOF2    ------------------------>ANAC81<---------ANAC58--------->MYB52(1)    ------ ------>ALFIN1   --------->ANAC46 <------ZmHOX2a(1)   --------->ALFIN1   ---------->DOF2   ---------- ---->ALFIN1<----------DOF2      <----------ID1--------->DOF5.7(2)----------->GT1 <---------ZAT6   gtgtggaagaaaagcttttacaccagaagaagagtaggacgaaagcaacgttagcagtggagtgcgtctgttaaataaaggccactgttagacaaaagaa  21422700                        <---------SPL7                       <------MYB83                       <------MYB46(1)                      <---------------AtSPL3                      --------->MYB59                      <---------TOE1(2)                      <---------------AtSPL8      <---------------AGL15     <-----------------AG --------->SPL7     ----------------->AG <-------TEIL                                     <---------ANAC58     <-----------------AGL2    --------->SPL7                ------>ZmHOX2a(2)     ----------------->AGL2--------->ANAC58     <---------AHL20(2)         <---------ANAC46     <-----------------AGL3--------------->AtSPL3           <------ZmHOX2a(2)     ----------------->AGL3--------->ANAC58    <---------AHL20(1)          <---------ANAC58<---------    >>>>>>>>>MYB2 <---------YAB1      <----------DOF2      --------->ARR14(2)      <----------DOF2  - ---->DOF2  <---------TOE2(3)<---------SPL7    --------->AHL20(1) <---------ATHB12<---------DAG2   <- >DOF2--------------->AGL15<---------------AtSPL3          <---------ARR14(2)     <----------DOF2 ---   agagaaaaccaattttggttattgtaggtacggtacggttcttttgttatatattttgctggatcccaatggatattacttgggccttttgggctttaac  21422800                                        ------>ZmHOX2a(1)                                     -------                                  <-----------GT1                                            --------    <---------DAG2       <----------DOF2<---------------AGL15                              <---------ICU4    <----------DOF2      <---------DAG2 --------------->AGL15                              --------->YAB1 -DOF2                <-----------GT1  --------->TOE2(3) <---------AHL20(2)        --------->AHL20(2) ---------->HVH21 --------->YAB1  --------->ZAT6      ----------->GT1              --------->YAB1 --------MYB52(1)<---------YAB1 <-----------GT1     --------->ICU4                <---------YAB1 -------->GT1 <---------YAB1   <-----------GT1 ----------->GT1            <---------YAB1 <---------AHL20(2)   cggtgactttttatctctgattataaactttttttatcactccttaattttgtaattagtaaatttttgaagtattttgatactataatataaaaatgat  21422900                   --------->ANAC58                   --------->ANAC58                   --------->ANAC46                                            <---------ZAT2                  --------->RAP2.6(3)                                          <---------At4g35610                 --------->MYB52(1)                                            --------->At4g35610            --------->HSFB2a(2)                                                --------->ZAT2            <---------HSFB2a(2)                                            ------>MYB83        <---------SPL7                   --------->ARR14(2)                ------>MYB46(1)       <---------ANAC58                  <---------ARR14(2)           <------ZmHOX2a(1)      --------------->AtSPL8      <---------AHL20(2)              <---------ZAT2                   <-      --------------->AtSPL3     --------->AHL20(2)               --------->ZAT2              <------ -->ATHB12--------->SPL7      --------->AHL20(2)                  --------->At4g35610         <------ ->ICU4<---------ANAC58       <---------AHL20(2)                  <---------At4g35610  ----------->HVH21   ttgaatagggcgtaccagaaaacggcacatatttatttaatcgaatcggtagattagatttattcttcagcaggaccagcctgctgtctctgaccacttt  21423000                            <---------ANAC58                        <---------GLK1(1)                                 <-----------RAV1(2)                       <---------GLK1(2)                               <---------bZIP60(1)                 --------->ATHB12          <---------YAB1              --------->REM1(1)                 <--------ATHB1          --------->YAB1                --------->bZIP60(1)                 -------->HAHB4         <---------YAB1            <---------ZAT6                 --------->ATHB51     <--------HAHB4     --------------->AGL15               --------                 <---------ICU4       --------->YAB1     <---------------AGL15               --------                <---------YAB1       <---------YAB1     ----------------->AGL3               --------                <---------ATHB51   <---------ZAT6       <-----------------AGL3              <-------- ---------DOF2  --------->ICU4   ----------->GT1        <-----------------AGL2              --------- ----DOF2     --------->YAB1<---------ANAC58            ----------------->AGL1  --------------------- ---DAG2     <---------YAB1 <---------ANAC46--------->ZAT6        ----------->GT1      <----------DOF2   tctttttttctcggtataataattggattttcgtatagtattattatcagtagttaatgccataaatggtgttacatcaggttttctgactttccacgga  21423100  Previous    Next  AGI:  At3g57800.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23529.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 21418766    to: 21422589    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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