Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ARR14(2)                    --------->At4g35610                             <-----------RAV1(2)                                  <---------At4g35610                   --------->ANAC58         <---------ARR14(2)               <---------At4g35610                ----------->TGA1           --------->GLK1(1)            <------ZmHOX2a(2)        ----              --------->ANAC55(2)          <---------GLK1(1)            =============================        --------->ATHB12  --------->At4g35610                     ----------->RAV1(1)            <---       <---------YAB1---------->DOF2 <---------WOX13(1)           --------->MYB52(1)             <---     --------->YAB1--------->ANAC58--------->ATHB12       --------->WOX13(1) --------->At4g35610<---- ------MYB52(1) ----------->HVH21 <---------YAB1       <-----------GT1--------->At4g35610 -----------   ttgagtagcatgattcaagtgacgaaagagctcaggctgattgagaaatctgcatattatccatcaaacaacagatcacagatgagctccatatgacagg  21408100 --------------->AGL15 <---------------AGL15 <----------DOF2                                                         <-----------GT1 ----->ARR14(2)              ----------->GT1                         --------->ARR11(3)--------->ANAC58 ==HOX2a_HOX2a            <------ZmHOX2a(1)                          <---------GLK1(2) --------->ANAC58 ------GLK1(2)         <---------LBD16    --------->At4g35610<---------YAB1            ----------->GT1 ------ARR14(2)    ---------->DOF2   <---------YAB1          <---------TOE2(3)        --------->DAG2 --ZmHOX2a(1)   --------->TOE2(3)  --------->YAB1        --------->TOE1(3)           ---------->DOF2 >HVH21       <---------ATHB12    <---------YAB1         --------->TOE2(3)---------->ID1   attctttttgtagtcaaacattaaaccaggaatgttattatagtagcttcagtctgaaacattaacattcagatttttcccaatagaaaaagcaaaatgt  21408200                                                   --------->AHL20(2)                 --------->ANAC55(2)               ----------->TBP                 <---------ANAC55(2)               <---------AHL20(2)        <---------ANAC58                <---------ANAC58        <---------ANAC58             --------->TOE2(2) --------->CCA1(1)    --------->GLK1(1)                --------->TOE1(2) --------->RVE1(1)   <---------GLK1(2)     <-----------GT1<---------ANAC58<---------ARR11(3)          <---------ICU4<--   --------->ARR14(2)   <-----------GT1 --------->ANAC46--------->ARR11(3)      ----------->GT1  ----   <---------ARR14(2)  <---------AHL20(2)        ----------->TBP          <------ZmHOX2a(1)     -----   tcacagatttgcttctgttacataatttaacttctaatacctgcgtaacatatataaatatctctgattttctacaggaagatagataattacagaaaac  21408300                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                  <--                                                                                                 <---                                  --------->At4g35610                                            <---                                  ----------->RAV1(2)             <---------TOE2(3)              <---    <-----------GT1       <----------DOF2                         --------->MYB59               <---- -------MYB52(1)          <---------DAG2 <----------DOF2  ---------->DOF2                   <-------- ----->TOE2(3)  <-----------GT1   ------>ZmHOX2a(1)     --------->ARR11(3)                  <-------- ------>GT1   <-----------GT1 <-----------GT1       ---------->DOF2----------->GT1          <--------   gttatttaacagagtttttctccattcacttttatcctctgagcttttggacttgaaagataaagagtaaggtttaaaaagttttgacttatttgcttgg  21408400                        --------->ZAT18                      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxsmallRNA(s)         --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(s) <--------P        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ALFIN1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------GAMYB   <---------ZAT14 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                --------->ZAT18         <xxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <---------ZAT18         <xxxx xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxsmallRNA(fl3)xxxx -----NtERF2    --------->ZAT14                                   --------->TOE2(3)             <xxxx -------MYB46(3)<---------ZAT18      ------>NtERF2                --------->YAB1                xxxxx ------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ------ ------ANAC58 ------->PIF5  --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)                 <----- ------ANAC58 <-------PIF5  --------->ANAC58 ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----LBD16<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <xxxxx -ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ATERF1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -AtLEC2 --------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC58       --------->TOE2(3) -ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)<---------DEAR3(1)      --------->ANAC58<----------DOF2 <xxxxxxxx   cgggttgagccaggcccgtgcagtagtgcaacgcatgggcgactcgtgaaagcccagatagcaagctatcttagtgggctttctcccttaaaaaatagag  21408500                  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                  --------->PCF2                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <-----------TCP11(1)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ------>ZmHOX2a(2)              <---------At4g35610                               --------->ARR11(3)        --------->ALFIN1                                        <---------ARR11(3)      <---------ANAC46   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ALFIN1  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <xxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC46 ----------->RAV1(1)                    <xxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ANAC58 <---------ALFIN1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        <xxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ZAT18 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                       <---------ZAT14 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --------->ZAT14         <------NtERF2 xxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ARR14(2)       <----------ID1 xxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->ARR14(2)      --------->DAG2 xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->GT1    --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ---------->DOF2 ----ZAT6 ----------->TCP11(1) <---------ARR11(3)   xxxxxxxxxxxxxxxxxx>smallRNA(si3)---------->DOF2 xxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR11(3)   <---------GLK1(2)     ---------->DOF2   --------- xxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------RVE1(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------YAB1   ttaatatcgtgtgggccgatggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgattt  21408600           --------->HSFB2a(1)           <---------HSFB2a(1)           <---------ZAT2           <---------HSFC1(2)           --------->HSFC1(2)           <---------At4g35610             --------->ANAC58          --------->ARR14(2)               --------->ANAC46                 <---------ICU4        <--          <-----------ARR10                --------->ANAC58                 --------->ATHB12---------          <---------ARR14(2)              <---------LBD16              --------->ZAT14    <------ZmHOX2a(1)       <---------DEAR3(1)        <---------ANAC58     <---------ANAC58 <---------ZAT14 <-----------RAV1(2)      <---------LBD16            <---------ANAC58     <---------ANAC58<----------DOF2<-----------HVH21 >ATHB12 <------NtERF2 --------->ZAT6    <---------ALFIN1       --------->ALFIN1     <-----------TGA1   ggacgatgggcggagcttcttatttatactacaatgcttatgaccacggctctctaacttgtcgatgtgggactttactcattgcatcgtcaggaggtaa  21408700             ------->TEIL                                                              <---------ANAC46             --------->SPL7                                                            <---------ANAC58             <-------TEIL                                                              <---------ANAC58             <---------TOE1(2)                                                        <-------TEIL            <---------MYB52(1)                                                      --------->ARR14(2)            <---------SPL1(1)                                                       <---------ARR14(2)           <---------SPL7            ---------->DOF2                                <---------GLK1(2)          <---------ANAC58        --------->TOE2(3)                           <---------ETT(2)          <---------ANAC58    ------>MYB46(1)                                 --------->ETT(2)         --------------->AtSPL3--------->ARR14(2)                           --------->REM1(2) ---------GT1<---------TOE2(2)------>MYB83    --------->ANAC46              --------->ZAT14--------->ALFIN1 -->GT1------------------>SPL14<---------ARR14(2)                          <---------REM1(1)---------   atacaatcccatccgtacgttttcttctcaccaaatccttgaagctacaaacaacttcgactggagctatgcaatcggtgtagacagattcgtgtggtac  21408800                                                                                        <---------RAP2.6(2)                                                                                        <---------ANAC46                                                                 ----------->HVH21      <---------ANAC58                              <---------------AtSPL8       --------->WRKY12             <---------ANAC58     --------->ATHB12  <---------ZAT2              <----------DOF2 <<<<<<<GRF7    --------->ARR11(3)    <---------YAB1    --------->ALFIN1         ------->TEIL----------->HVH21      <---------ARR11(3)   <-------TEIL     <---------ANAC58     <---------TOE2(3) --------->WRKY45 <---------At5g28300 --------->TOE1(2)  <---------ANAC58   ---------->DOF2     --------->WRKY38(1) --------->LBD16 -->GT1             <---------ANAC46--------------->AGL15<----------DOF2<----------DOF2<---------LBD16   aaaggtacgattgaaaacagagccgtgctgatcaagtactataaaggtgaaccctttaactttgaccctgacaacttttaccgtgatattgcggtttcat  21408900                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                   <---------ANAC58          --------                                                               --------->ARR14(2)           <--------                    --------->KAN4(2)                          <---------ARR14(2)           ---------                   --------->HSFB2a(1)                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->KAN4(1)<---------ANAC58          <---------MYB52(1)            <--------                   <---------HSFB2a(1)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->DAG2                   <---------HSFC1(2)  <-------GAMYB       <---------LBD16            --------->DAG2                   <---------KAN4(1)<---------ANAC46       --------->SPL7         --------->LBD16  --                   --------->HSFC1(2) --------->ALFIN1   <---------SPL7          --------------->AGL15              --------->YAB1 --------->ARR11(3)         --------->TOE1(1)       ----------------->AGL3        --------->RAP2.3(3)  <---------ARR11(3)         --------->TOE2(1)       =====================      <---------At4g35610  --------->ANAC58        <---------ARR14(2)       <---------ARR14(2)     <-      --------->At4g35610  --------->ANAC58        --------->ARR14(2)<---------ANAC46---------->DOF2< --------->YAB1   <---------KAN4(2) <---------ANAC58   ------>ZmHOX2a(1)    --------->ARR14(2)     --   cgatgatgagcagccataagaatgttctcaagctcttggggtgttgtctagagtttcctcgtccggttctcgtgtgtgaatacccagaaaagggagctct  21409000  Previous    Next  AGI:  At3g57760.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G57740.1); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 21406570    to: 21408221    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g57765.1    Description:  U2.3; snRNA. gi|17662|emb|X06474.1|ATU23 Arabidopsis thaliana U2 RNA gene (U2.3) Range:  from: 21408239    to: 21409109    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57770.1    Description:  protein kinase, putative. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57700.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN68783.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 21408519    to: 21409830    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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