Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->GLK1(1)         <---------GLK1(1)        --------->ARR14(2)        <---------ARR11(3)        --------->ARR11(3)        <---------ARR14(2)       <------ZmHOX2a(1)           --------->ARR11(3) ------GLK1(1)                     --------->GLK1(2)<------ZmHOX2a(2) ----->GLK1(1)                    <---------GLK1(2)--------->ARR14(2) -ZmHOX2a(1)         --------->HSFB2a(2)           <---------ARR14(2)             <---------YAB1 --TOE1(3)           <---------HSFB2a(2)----------->HVH21                      <---------YAB1      -- --TOE2(3)          <---------LBD16<---------ARR11(3)------>ZmHOX2a(2)         --------->ICU4      --   tttcagataggatatccaaatttgtggaagagggaagaatctttgacatgttggatccaaaaatgttggaaagtatgggtgatgatgaaaccgaagaaca  21404600             ---------->DOF2    <----------ID1   <-------TEIL  --------->ARR14(1)  --------->CCA1(2) <---------ARR11(3)                                                                            ------ --------->ARR14(2)                                                                   --------->ANAC58 <---------ARR14(2)                                                            --------->HSFC1(2) --------->ARR11(1)                   --------->At4g35610                      <---------HSFC1(2)  <- ------->ANAC58                       <---------At4g35610              <---------YAB1 --------->ANAC46 ------->ANAC58        ------>ZmHOX2a(1)       <-----------HVH21     --------->YAB1   --------->ANAC58   caagatacgacgaatgaaagcagtccttatgctctcactcagatgtactggtcatagaggtgatgttccaaagatgatggaagttgccaaggaactaaaa  21404700                                                                                  --------->At4g35610                                                                             <------NtERF2                                                    <---------AtLEC2    <---------MYB46(3)       --------->CCA1(2)                  <---------ANAC58             <---------ANAC46 ---->DOF2               <----------DOF2  <---------ANAC46          <-----------RAV1(1)  <---------MYB52(1) -----ZmHOX2a(1)    <------ZmHOX2a(1)     <---------ANAC58       --------->MYB52(1)    <---------ZAT6   aggattgagagatggacatagaggaaacttttacaaagtttattgtgtgcatttgtatgaagagggctaactggtgggcagagtagctacagttaactta  21404800                                                  --------->ATHB12                                                  -------->HAHB4                                                  <---------ICU4                                                 <---------ATHB51                                              --------------->AGL15                                              <---------------AGL15                                             <-----------------AGL3                                             <-----------------AGL2                                             ----------------->AGL3                                           <---------ARR11(3)           <---------YAB1                                          --------->RVE1(1)           --------->YAB1                                     ----------->GT1                 <---------AHL20(2)                               <------ZmHOX2a(2) --------->ICU4      <---------YAB1          <-------             --------->ICU4--------->ALFIN1--------->ARR11(3)     ------->TEIL               --------        ----------->GT1 --------->ARR11(3)--------->CCA1(1)    ----------->GT1              ---------   tttgctcaatgtgtaatatttaagaagatgtggatcaaattgaaatatctaattatgggagtagaatgtatattataaatgtattgggtcaatatttaat  21404900                          --------->ARR11(3)                          <---------ARR11(3)                         --------->CCA1(1)     <----------ID1    --------->YAB1                             --------->YAB1     --------->ANAC58 <---------YAB1                       --------->WRKY45                  --------     --------->ANAC58--------->AHL20(2)                    --------->WRKY38(1)               --------     --------->ANAC46<---------AHL20(2)                    --------->WRKY12          <----------DOF2 --AHL20(2)         --------->YAB1           <-----------GT1 >>>>>>>>>WRKY6      <---------ANAC58 ->AHL20(2)        <---------YAB1    --------->ETT(1)   <---------MYB46(3)       <---------ANAC58 >AHL20(2)      <---------TOE2(3)   ---------->ID1 <---------ATHB12     <---------ATHB12   ----------   aactaaaacgacatggataagattataatatctaatttgtcggaatttgaccactcagtagttgactatcacaaatcaagtttgcttctttgcaaaagcc  21405000        --------->HSFB2a(1)        <---------HSFB2a(1) *TSS   <---------HSFC1(2)                                                             <-----------ARR10 ->ANAC58             --------->CCA1(2)                                       <---------------AGL15 ->ANAC58<----------DOF2                                                   --------->GLK1(2) >DOF2  --------->HSFC1(2)            --------->YAB1             --------->MYB52(1)   <------ZmHOX2a(1)   aaagtttcgaactttctccaatagagatgagcaagaacaataagaagaagagaagatgggatttgaagaacggagggattctattagaggagctaatcgc  21405100                                                            <---------ETT(1)                                                            ------->GAMYB                                                    ---------->DOF2                                                  ------>ZmHOX2a(1)                                                 --------->TOE2(3)                                                 --------->TOE1(3)                                                ------>ZmHOX2a(2)                              <---------ANAC58 <------ZmHOX2a(2)                           <---------MYB52(1) <---------ARR11(3)                         <---------MYB46(3)   --------->ARR14(2)                         --------->MYB52(2)   --------->ARR11(3)                                   <-                 ------>MYB83 <---------ANAC58<---------ARR14(2)                                   --                 <---------ARR14(2)           --------->AGP1--------->At1g77200                <-----                 --------->ARR14(2)           <---------GLK1(2)                               -------                 ------>MYB46(1)            ----------->ARR10                               ---------                --------->WOX13(1)   =================HOX2a_HOX2a                           ---------               --------->AtMYB61     ------>ZmHOX2a(1)    --------->MYB52(1)                <--------        <------NtERF2   <-------TEIL ==================HOX2a_HOX2a                          ---------       ------>NtERF2  --------->ARR14(2)  <------ZmHOX2a(2)--------->DEAR3(2)        --------->ARR11(3)      --------->ANAC46<---------ARR14(2)  ===============HOX2a_HOX2a      ---------->DOF2   <--------   ----------->HVH21  <---------GLK1(2)  <-----------HVH21-------->P    --------->ANAC46  <----------   ttccttcgacggcaaaaccaatccgattcgttgcttctcctccgatcagatccttaaagctaccgacaatttctccgaaagccgaattatctccagctgg  21405200   <---------------AGL15   --------------->AGL15  <-----------------AGL2  <-----------------AGL1  <-----------------AGL3                                                                           <- --------ARR14(2)                                                                                  -- ------->ARR14(2)                                                                                 --- ----LBD16                                                                        --------->ANAC46--- -->ALFIN1                                                                 --------->ANAC58       <-- >ZAT2                                                                     --------->ANAC58       <-- -->RAV1(2)                                      --------->ANAC58   --------->RVE1(1)            <--- -ZAT2              <---------ANAC58             --------->ANAC58  --------->ARR11(3)            ---- >At4g35610         <---------ANAC58        --------->WOX13(1)     --------->GLK1(2)       <---------ARR14(2) -At4g35610    ---------->DOF2   <----------ID1--------->YAB1      <---------ARR11(3)      --------->REM1(2) -RAV1(2) ----------->GT1      ---------->DOF2<---------ATHB12    <---------GLK1(2)     <---------ANAC46   ggatacttcatatggtacaaaggcgtaatcgaagaaagacaagtttcaatcaagaaatggtcgagtcaaaatctctcaagcttcacagaagcgtatagag  21405300              <-----------RAV1(2)           ------>ZmHOX2a(1)       ------->TEIL       --------->ARR14(2)       <---------ARR14(2)     --------->ANAC58      <---------CCA1(2)       --------->ANAC58 --------ARR11(3)      <---------ZAT18 ------->ARR11(3)      <---------ZAT14 ------>GLK1(1)        --------->ZAT14 ------>RVE1(1)        --------->ZAT18                               <---------ARR11(3) -------GLK1(1)     <---------ANAC46                  <-------GAMYB  --------->ARR11(3)             < -------RVE1(1)    --------->ATHB12                  --------->MYB111(2)              ----------->GT1 ------ARR11(3) <---------At4g35610     ---------->DOF2   <---------ANAC46     <----------DOF2      - ----->ARR11(3) --------->At4g35610  <----------DOF2 <---------MYB46(3)------>ZmHOX2a(2)        -----   atatctctgtatcctctcagatgagtggacacaagaacgctttaaagcttataggttgttgtttggagtttgatcttccagctttagtctgtgaatacac  21405400                                                <---------At5g28300                                          <---------MYB46(3)           <----------DOF2                ----------->GT1         --------->At4g35610             <---------AtMYB61   --------->ANAC46                    <---------ANAC58   --------->ANAC58                    <---------ANAC58   --------->ANAC55(1)                 <---------ANAC46                                           <--   --------->ANAC58                  <---------ZAT14                                              <--   <---------ANAC55(2)               --------->ZAT14                                      <---------AGP1 ---------ZAT14                      --------->ZAT18   ---------->DOF2               --------->STY1(2) -------->ZAT14                     --------->ALFIN1--------->AtLEC2        ---------->DOF2    ------ ---->ANAC46              <------ZmHOX2a(1)    <-----------GT1      <---------YAB1   <---------STY1(2)   agaacacggaccgcttaatagagacggaggactctcaagtggagtggttttaccatggaaagtgagattgaagattgctaaagagatagctagttctgtg  21405500  Previous    Next  AGI:  At3g57740.1    Description:  protein kinase family protein. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57750.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57750.2); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 21403648    to: 21404721    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g57750.1    Description:  protein kinase, putative. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57700.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 21405001    to: 21406265    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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