Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ------->TEIL                                           <---------------AtSPL8                                     <---------AHL20(2)                                     --------->AHL20(2)                                     --------->AHL20(1)       <-----------GT1               <---------AHL20(1)      <---------YAB1              <---------GLK1(2)--------->AHL20(2) ----------->GT1   <---------HSFB2a(2)     --------------->AtSPL8                         <---------YAB1 -->ANAC58         --------->HSFB2a(2)<---------AHL20(2) --------->At4g35610            --------->YAB1 -->ANAC58 --------->ANAC46  --------->MYB52(1)<-------TEIL               ------>ZmHOX2a(1)   aacatgttattacaagacgttttagaagaaaaaacagaatttattcatgtacataaattatctgactagactaatcctactgggacttaattgtgattag  21364300                                                                                      <---------MYB46(3)                                                                                    --------->At5g28300                                                                                   ----------->GT1                                                                                  <---------DEAR3(1)                                                                                  <---------ANAC46                                                                                 <-------------------                                --------->GLK1(1)                              ----------->TGA1                    ----------->GT1    <-------TEIL                            ----------->HVH21         <-------TEIL           <---------GLK1(1)     <---------TOE2(3)  --------->ZAT14    --------->AHL20(2)    --------->MYB52(1)     --------->MYB52(1)      <---------ZAT14   acaaaaaaaaattcattttgagaagaaaaaacagaaacccgttcatggaattaactgagattagacaaattcaactacagtatgacggtgattacaggga  21364400                                                                                    ------------>CBF                                                                            <---------YAB1  <--------                                                                            <---------AHL20(2)                                                                           --------->AHL20(2)                                                                           --------->AHL20(1)   ----------->GT1                                                         <---------AHL20(2) <---------ARR11(3)                                         <---------AHL20(2)     --------->ANAC46 --------->ARR11(3)                                        <---------AHL20(2)--------->YAB1<---------YAB1 --WRI1---------->DOF2              <---------YAB1<---------AHL20(2)       <---------AHL20(1) <------   gaatatcgtaaaagaacaggttttattttcttccatttttgatagaacacatttttttttttttaatgagtgtataatataataaacacaatttttattt  21364500                                                                                   <---------DAG2                                                                                --------->RRTF1(3)                                                                                --------->RAP2.3(2)                                                                               <------NtERF2                                                                               --------->DEAR4(2)                                                                               --------->RAP2.3(1)                                                                              ------>NtERF2                                                                             --------->ANAC46                                                                       <---------MYB46(3)                                           ----------->GT1            <--------P--------->DEAR3(1)                               --------->ANAC46                      <---------MYB52(1)          --------->TOE1(3)    --------->ANAC58                      <-------GAMYB <----------DOF2    <-----------GT1            --------->ANAC58                   <---------LBD16------>NtERF2 -AHL20(2)------->GAMYB   <----------DOF2---------->DOF2--------->TOE2(3)<---------ANAC58 ---YAB1  --------->TOE2(3)<-----------HVH21            --------->TOE1(3)<---------ANAC58   tagttttctcaaccctaaaactaaaaccctttcacgccgattcaaaagaaaaaaaaaaccttcacaagtccggttgctcgcgccgcttttctctctgttt  21364600                                                                                       <---------REM1(2)                                                                                     --------->ZAT14                                                                              ------>NtERF2                                                       <---------ANAC58       <------NtERF2                             <------------CBF          <---------ANAC58       <---------SPL7                    <---------ANAC46   --------->TOE1(3)                     --------->RAP2.6(2)                  ------>NtERF2        --------->TOE2(3)                     --------->DEAR3(1)                  <XXXXXXXXXXXXXXXXXXXXMIR168A/B     <---------MYB52(1)     --------->RAP2.3(1)  ----          ---------->DOF2 ------------>CBF <------------CBF      --------->ZAT6<---------ALFIN1  <---   tcaaactccgattaaagtcccgacttgtatcaattgataaaccctaattgtctccgttcttgctgaaacactaatctcgccgcacagtttacacagcctc  21364700               --------->ANAC58               --------->ANAC46               --------->ANAC58             ------>NtERF2            --------->O2            <---------O2            --------->DEAR3(1)         --------->DEAR3(1)        --------->DEAR3(2)       ------>NtERF2                          --------->ALFIN1     <---------YAB1      <---------ALFIN1              ----------->RAV1(1)    <---------At5g28300                    <--   ----------->HVH21       --------->ANAC58 --------->ALFIN1      <----------DOF2                 <-- ----->HSFB2a(2)           --------->ANAC58 <---------ANAC46 --------->DEAR3(1)                   --- ------HSFB2a(2)------------>CBF   --------->MYB46(3)     <-----------GT1                         <--   cagaagcgacaccgacgacgcaatggctcacgctcaaaccacagaggtgtgtttgagttttcaccgctctttattgtttcccatggtgttcgaccttgga  21364800                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                          ------->TEIL                                                 <---------ZAT2                                                 --------->ZAT2                                                <---------TOE1(2)                                               <-----------RAV1(2)                                         <---------HSFC1(2)                                         --------->ZAT2   <---------ARR11(1)                                         <---------ZAT2   --------->GLK1(2)                                         --------->HSFC1(2)                                         <---------At4g35610                                    <---------LBD16 <---------MYB46(3)        <---------TOE1(2) <----------DOF2<---------HSFB2a(1)                  ----------->HVH21 -------MYB46(3)       ---------->ID1    --------->HSFB2a(1)                --------->YAB1 ----MYB46(1)         <-----------GT1    --------->At4g35610   <---------MYB52(1)                ---- -------->GT1 --------->HSFB2a(2)   --------->LBD16<---------AtMYB61       <-------TEIL   --------->ARR11(3) ----MYB83    <---------HSFB2a(2)  <---------LBD16 --------->ALFIN1  <-------TEIL         <---------ARR11(3)   tggtttatcttatgttctcgagtttttccttttgaatccagggagcttcccaggtggtcgaatctgttagattcagtttcatgacagagcaagatgttcg  21364900                                                                                           ----------                                                                                     <------MYB83                                          <---------ANAC58                           <------MYB46(1)                                          <---------ANAC46                  =====================HOX2a_HOX2a                                          <---------O2                      ------>ZmHOX2a(2)                                          <---------ANAC58                  <-----------------AGL3                                          <---------bZIP60(2)  <---------AtMYB61    --------->MYB59                                        <---------DOF5.7(2) =======================HOX2a_HOX2a                   -------->P         --------->DOF5.7(2)   <-----------RAV1(1)--------->AHL20(2)                  <-----------GT1   --------->ANAC58  ------>ZmHOX2a(1)   <---------ARR11(3)           --------->LBD16          --------->ANAC58  <----------DOF2     --------->ARR11(3)    <----           ------>ZmHOX2a(1)        --------->ANAC46  =============================HOX2a_HOX2a-------         <---------ANAC46  ------>ZmHOX2a(1)--------->ALFIN1------>ZmHOX2a(1)  <---------AHL20(2) ------>DOF2 ---------->DOF2    <-----------GT1  --------->GLK1(1)       --------->YAB1   ------>ZmHOX2a(1)   aaagcatagtttcctgaaagttaccagtcctattttacacgataacgtgggcaatccttttcctggtggtctctatgatcttaaattaggtcctaaagat  21365000                                                                                      --------->ANAC46                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC58                                                                                      --------->ANAC55(1)                                                                                      --------->ANAC58                                       <---------ANAC46                        <---------DAG2                                       <---------ANAC58                        <----------DOF2                                       <---------ANAC58                       <---------DAG2                                <---------At5g28300                        --------->ANAC58                            ------>ZmHOX2a(1)                              --------->ANAC58       --- --------->ANAC58           <----------DOF2                              <---------ANAC58      ------ --------->ANAC58       <---------ARR11(3)             <----------DOF2   <---------ANAC58   <-------- >DOF2 --------->YAB1   --------->ARR14(2)       --------->YAB1          ----------------------->TaNAC69(2) -----YAB1              <---------ARR14(2)      <---------YAB1 <---------ARR11(3)    <---------LBD16 -->YAB1               <---------CCA1(2)      --------->YAB1   --------->ARR11(3)   <-----------GT1   gataagcaagcgtaagttttcttccatatccttttaccatggcctgaattatcatgcctttctaagctcttaatagctcgcctttttcacgcaactttta  21365100  <---------ARR11(3)  --------->ARR11(3)                                                                           ------ ------->DOF2                                                                                -------- --->YAB1     <-----------GT1          <---------GLK1(2)                                     <------- --DOF2 <----------DOF2    <----------DOF2                                      <---------AtLEC2<----   taaagacctcctttttatacctgtctaggctttgaattgtcgattcttagttggaagtagctattcatacaccgatttgtttgcaagtagctattgatct  21365200  Previous    Next  AGI:  At3g57660.1    Description:  NRPA1 (nuclear RNA polymerase A 1); DNA binding / DNA-directed RNA polymerase. similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70028.1); similar to RNA polymerase I, large subunit (ISS) [Ostreococcus tauri] (GB:CAL56856.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23545.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase Rpb1, domain 1; (Inte Range:  from: 21364723    to: 21373791    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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