Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ARR14(2)             <---------ARR14(2)         --------->HSFB2a(2)      <----------DOF2     <---------ANAC58     <---------ANAC58     <---------ANAC46    <------NtERF2   --------->ABI4(2)   ------>NtERF2   <---------MYB46(3) <---------MYB52(1) <-------GAMYB ---------MYB46(3) ---------DEAR3(2) ------->ETT(1)                                 <----------DOF2                                   <-- --------DEAR4(1)                              <---------ANAC58                                   --- --------ANAC46                    <---------YAB1                                                 --- --------At1g77200             --------->AHL20(1)                             --------->HSFB2a(2) === --------DEAR3(1)       --------->LBD16    --------->GLK1(1)                  <---------HSFB2a(2) <-- --------DREB2C(2)    <---------LBD16      <---------GLK1(1)            ------>ZmHOX2a(2)         <-- --------HVH21        <---------At4g35610 <---------ARR14(2)          <---------ARR11(3)          <-- -------RAV1(1)       --------->At4g35610 --------->ARR14(2)          --------->ARR11(3)   --------->O2 ---->ALFIN1<------ZmHOX2a(1)  <---------AHL20(1)             --------->ARR14(2)         <---------ALFIN1 ->DOF2  <---------HSFB2a(2)   --------->ARR11(3)             <---------ARR11(3)      --------->PCF2 >HVH21  --------->HSFC1(1)  --------->GLK1(2) <---------ANAC58--------->CCA1(2)     <-----------HVH21   gtcggtggcttctaggatttgatcagcggagaatattttgatgggatttgctttgccattgcaagatttgatgatctcttctagcaatgtcccacctctc  21356900                                    --------->ANAC58                                    --------->ANAC58                                  <---------ANAC58                                  <---------ANAC46      --------->TOE1(1)           <---------ANAC58      --------->TOE2(1)      <---------ICU4     ------>ZmHOX2a(1)       -------->HAHB4     <---------LBD16         --------->YAB1 -------O2                  <---------ATHB51               --------->ANAC58 ------>O2               --------->AHL20(2)                --------->ANAC46 ------>TGA1a------>MYB83<---------AHL20(2)                --------->ANAC58 ================================bZIP_DOF                <---------ALFIN1            --------->DAG2 -------ANAC58          --------->AHL20(2)               --------->AtMYB61          ---------->DOF2 -------TGA1a------>MYB46(1)--------->ICU4              --------->MYB46(3)    ------->GAMYB       <-- -------ANAC58        <----------DOF2            <<<<<<<<<TBF1               ----------->GT1<--------   tcgtgtcctcggaccaatctctcccttttaattatggctcgtaaactcttcttcttccaccactccatctcaaacaacaacgaaaaaaaagtttctttta  21357000                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                            --------->MYB52(1)                                                          --------->DAG2    <---------DOF5.7(2)                                                         ---------->DOF2   <---------WRKY38(1)                                                    --------->REM1(2)      <---------WRKY12                                                   --------->ALFIN1        <---------WRKY45                                              --------->ANAC46     <---------ANAC55(2)                                  *TSS        <---------ALFIN1     <---------ANAC58     <------ZmHOX2a(1)     ----------->HVH21 --------->MYB46(3)    <---------ANAC55(1)   <---------TOE2(3)       ----------->TGA1  <---------MYB55(2)    <---------O2   <---------TOE1(3)--------->ATHB12        <---------ALFIN1       <---------ANAC58 --------DOF2      <---------ATHB12       --------->AtMYB61        <---------ANAC46        <---------TOE2(3) --DOF2 --------->AHL20(2)<---------WOX13(1)--------->ANAC46  <---------REM1(1)------->GAMYB <------ZmHOX2a(1)   cttttgaggataaaatgaccaaagattgaatgacgagttgaagaccacacaccgtgttgaaaagttgtaacgtgaagtcaacgaaacaccattaaggagt  21357100                                                                               --------->ZAT2                      <----------DOF2          <---------MYB46(3)              <---------ZAT2              ----------->GT1             ---------->DOF2                      --------->At4g35610             --------->DAG2          <----------ID1                            <---------At4g35610           ---------->DOF2      --------->At4g35610                <----------DOF2   <---------MYB52(1)   aagacttcgttggaaaaggtttatcttttagagcagaagaagacaaaagttgttgaaaattcttcacctctttgtctgttcagctcccttactctctctt  21357200                                  <---------MYB52(1)                    --------->ANAC58          <---------TOE2(2)            <---------HSFB2a(2)     <-                    --------->ANAC58          <---------TOE1(2)      <---------TOE2(3)     --------->GLK1(2)      ------>ZmHOX2a(1)         ----------->GT1            ---------->DOF2 --------->HSFB2a(2)   <---   atactctcctctgtttcaagacaagcacagagaaacgttactccctcttatgttttaagtataaagacataaacgttttggaagagaagagagaaactga  21357300                                  --------->ANAC58                                  --------->ANAC58                    ------>ZmHOX2a(2)                   *TSS        <---------REM1(1)                                                    -        --------->YAB1------>ZmHOX2a(1)       --------->ANAC58                                   ----       <---------YAB1--------->TOE2(3)        --------->ANAC58                                  -----     --------->YAB1<------ZmHOX2a(2)          --------->ANAC46                            --------->At4g35610 ----------GT1    --------->ARR14(2)        <-----------GT1                <---------ZAT18--------->ZAT14 ------WOX13(1)   <---------ARR14(2)   --------->ICU4        <-----------HVH21            <---------ZAT14   tttactatattgatagttcggatccttatattgatgaagccatgtttaacgcaattctatatgagtcagagcatcagtgcatcaattcacagagcagaaa  21357400                       --------->GLK1(2)                      <---------ARR14(2)                      <---------GLK1(2)                      --------->ARR11(3)               <----------DOF2        <---------MYB52(1)<----------DOF2                                                          --    ------>ZmHOX2a(1) <---------ARR11(3)                                                          --- -------->ARR14(2)    --------->ARR14(2)        <<<<<<<<<TBF1                                     <-- ----->DAG2   <---------ANAC58             <----------DOF2                               --------->ATHB12 ----->DOF2   <---------ANAC58      <-----------GT1                  <---------ANAC46   <---------YAB1   aagttcctccgtttttgctttgaagattctttctcaagtttccatctttcttcttctgggtttacatagttctgtgaatcacagactgtgatcagtggca  21357500                                   <---------AHL20(2)                       <---------TOE2(3)                                  <---------AHL20(1)                       ---------->DOF2                                  --------->AHL20(2)                   --------->ATHB12                          <----------ID1                              <---------AHL20(2) ----->GAMYB---------->DOF2       --------->AHL20(1)              <---------AHL20(2)     <---------ANAC58 ------>MYB46(3)        ---------->DOF2--------->ATHB12         --------->ANAC55(2)      --------->ANAC46 -------MYB52(2)  <-------TEIL    <---------AHL20(2) --------->YAB1  <---------WOX13(1)  <---------ANAC58   acgaacacagagaacaaagatgcattaaaagacaaatttattcattgttttgtattgatagttcatatgtaattgattaaagaagaaatatgcgtaagag  21357600                                                                <------MYB46(1)                                                                <------MYB83                                                              <---------MYB52(1)                                                             <-------GAMYB                                                            --------->ATHB12                                                            <---------MYB46(3)                                                   <---------STY1(2)                                                   --------->STY1(2)                         --------                                                   --------->ZAT2                            --------                                 ---------->DOF2  --------->ANAC58                           <-------          <-------TEIL    <----------DOF2         --------->ANAC58        <----------DOF2   ---------   ---------->DOF2        <---------DAG2<---------ALFIN1    ------>ZmHOX2a(2)    <---------ZAT6   aagactaaagagtacatttggctaaacccttttttaaaagtcccacatcgacaagctagggatcgttggtcataagctttgtagtataaataagaagctg  21357700                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    --------->GLK1(2)                                                    <---------ARR14(2)                <---------PCF2-                                               --------->ZAT18                       ----------->TCP11(1)                                               <---------ZAT14                     --------->ALFIN1 -                                         <------ZmHOX2a(2)                       <-----------RAV1(1)-                                        <---------ARR11(3)                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ARR11(3)    ------                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             <----------DOF2   --------->ZAT14           <---------ARR11(3)  <-------                          ------>NtERF2 --------->ARR11(3)              --------->RVE1(1)    --------                          ---------->ID1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <----------DOF2  xxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ->ZAT2          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->At4g35610 --------->YAB1 <----------DOF2<xxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --At4g35610 <---------ICU4xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) >GLK1(2)   <---------ATHB12<---------DAG2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   agccattcgttctaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggctc  21357800  Previous    Next  AGI:  At3g57640.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G65250.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN68783.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 21355777    to: 21357034    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57645.1    Description:  U2.2; snRNA. gi|17661|emb|X06473.1|ATU22 Arabidopsis thaliana U2 RNA gene (U2.2) Range:  from: 21357319    to: 21358181    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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