Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -->YAB1                                                                                       <----- --HAHB4                                                                                    <-------- -->ATHB12                                   --------->MYB46(3)      --------->CCA1(2)      --------- ---ICU4              <---------YAB1     <---------ATHB12           <----------ID1          <-------- --ATHB12          ----------->TGA1 <-------TEIL                ---------->DOF2         --------->YAB1   ttagcatctaattctttcgaaatgacgattagtctagattcaaatcaactactgaatttgaacataaaaagagacgaactcatgtataaatcatataatt  21289900                                            --------->YAB1                             --------------->AGL15                             <---------------AGL15                         <---------GLK1(2)  <---------ICU4                          ---------->DOF2 ----WOX13(1)          <---------YAB1     --------->ARR11(3)                     ==================== -YAB1         --------->ANAC58     ----------->GT1                              ==================== >AHL20(2)     --------->ANAC46 --------->ZAT14                        --------->MYB52(1)      ------ -AHL20(2)     --------->ANAC58 <---------ZAT14                  ---------->DOF2 <------ZmHOX2a(1)   gaccagagacttagaagaagccacgatgattctctatacagaaaaatcatggcattggaatggtatcgaaagaaaacggagaaggagaaagggagacctg  21290000                                                                                <---------LBD16                                                                              --------->GLK1(2)                                                                        <---------HSFB2a(2)                                                                        --------->HSFB2a(2)                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                      --------->CCA1(2)                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                     <---------ARR11(3)                                                      --------->ZAT14--------->AGP1                                                      <---------ZAT14<---------ARR14(3)              ----------->HVH21                       --------->ZAT2 <---------AGP1             ------->MYC3                             <---------ZAT2 --------->ARR14(3)        ------>ZmHOX2a(2)                        <---------LBD16     --------->ARR11(3)       <------ZmHOX2a(2)                        --------->MYB52(1)  <---------CCA1(2)<---------GLK1(1)   <---------At4g35610                      --------->YAB1         ----------->ARR10 --------->GLK1(1)   --------->At4g35610 --------->ANAC58     --------->ATHB51      --------------->AGL15   <------NtERF2       --------->ANAC58    --------->ICU4        <-----------------AGL1 ==============HOX2a_HOX2a                 <---------ATHB12      ----------------->AGL1 =============HOX2a_HOX2a           --------------------->WRI1   ----------------->AGL2 ----->HVH21 <-------MYC3        ------>ZmHOX2a(2)--------->ANAC46<---------------AGL15 >>>>>>>>>>>>>   aaggcagcgatcgcatgtgaagggcaagaaatcgatctgtttgcaataatcgacggagcagtgtttacccagatctggaaattctggagttcccattgtt  21290100                                                                  <------ZmHOX2a(1)                                                                <---------TOE1(2)                                                              --------->TOE1(2)                                                             --------->YAB1                         --------->ANAC58                   <---------ATHB12           --------->HSFC1(1)                          --------->ANAC58           --------->HSFB2a(2)      <----------ID1     --------->ANAC58        ----------->GT1       <----------DOF2   --------->ANAC46             --------->DAG2    --------->ZAT14           <--     --------->ZAT2      --------->ANAC58    --------->AHL20(2) <---------TOE2(2)     ---------->DOF2 >>>>LFY   <---------HSFB2a(2)      <---------ETT(1) ---------->DOF2    <---------ZAT14     ---------   gagaccgagctttcgagaatattacacaaacaacaattccgacaaaaaaaaatcgaaaagcaatcgtaggatagtatagagaagtaagaaaagatggttt  21290200                                                       --------->GLK1(2)                                                   <---------HSFB2a(2)                                      --------->ARR14(2)                                 ----------->GT1   --------->LBD16                               ---------->DOF2     --------->HSFB2a(2)           <------NtERF2    --------->LBD16    --------->GLK1(2)          --------->LBD16  --------->LBD16    --------->ARR14(2)                  --------->ANAC58          ------>NtERF2   <---------LBD16     <---------ARR14(2)            <---------LBD16   >>>>>>>         <---------LBD16 <---------LBD16      <---------GLK1(2)    ------->GAMYB  --------->ANAC58         --------->LBD16--------->MYB52(1)<---------LBD16       ----------->RAV1(1)        >>>>>>>>>TBF1 -------YAB1     --------->CCA1(2)    <---------ARR14(2)      <------ZmHOX2a(2)--------->WRKY18(1) -->GT1 <---------LBD16<---------ALFIN1   --------->LBD16    XXXXXXXXXXXXXXXXXXXX>MIR403>>>>>>>>>TBF1   attagagtttcccggcgagatagacacaccgggaaaagaaaatccccagattccgagaatttagatcaacagaaaaactcgggcaaggaagaagaagaag  21290300                                                                                          --------->YAB1                                                                                          --------->AHL20(2)                                                                                         <---------ATHB12                                                                                       --------->WOX13(1)                                                                                     ------------>CBF                                                                                     <---------ATHB12                                                                                    ------>MYB83                                                                                    ------>MYB46(1)                                                                                    --------->ANAC58                                                                                    -------->P    ---                   <-----------TGA1                                                 --------->ANAC58                   --------->TOE2(3)                                               --------->MYB55(1)                   <-----------HVH21                                              <---------MYB46(2)                  --------->bZIP60(2)                                             --------->DEAR3(1)                  --------->ANAC46                                                <---------MYB55(2)                <---------DOF5.7(2)                                               --------->AtMYB61               <---------WRKY38(1)                                                <---------MYB111(1)               <---------WRKY12                           --------->WRKY45        --------->MYB46(3)               <---------WRKY45                    <-----------GT1                <---------MYB111(2)          ---------->DOF2                        <-----------GT1                 --------->MYB46(3)     ---------->DOF2                         <----------DOF2       --------->AHL20(2)--------->MYB46(3) >>TBF1<---------TOE2(3)       *TSS    <-----------GT1  <----------DOF2        <-----------GT1   <---   aaatttgtaaaggaaagtcaacgtcattcccatcttcttattttcttcttttttctctctttgactaaaaaaaattcgatttcaccaaccaattaaaact  21290400             <---------TOE2(3) <---------ICU4 -------->HVH21         <----------DOF2 --------HVH21      <---------TOE2(3)                <----------DOF2                        <--------   gtgactgggcttactaaggtctaaggcttttattcatttcatttcaaaacttgggctttaaaacatattcaacgatgttgggaacaggcccatttatcta  21290500                                                                                      <---------YAB1                                                           --------->AHL20(2)       <---------CCA1(2)                                                       --------->AHL20(2)       --------->TOE1(3)   -                    <---------YAB1                 <-------TEIL            --------->YAB1           -               --------->DAG2                     <--------P               <---------ICU4           <              ---------->DOF2                  --------->LBD16            <---------YAB1--------->WOX13(1)      --------->At4g35610                     <-----------RAV1(2)         <---------ATHB12  <-------- ---GT1      <---------ATHB12              <-----------GT1 <---------AHL20(2)   --------->TOE2(3)   <   gccttctcttctgcaataaagtatttttgtctgattaaaacatattttccaggtagattatataaatctcgttgtaatcataccttatatcattcactgc  21290600                                                                                     <---------ARR11(1)                                                                                     ------->TEIL                                                                                     --------->ARR14(2)                                                  <---------ANAC46                   <---------ARR14(2)                                                 <-------TEIL                     --------->ANAC58                                               <---------ARR14(2)                 <---------ANAC55(2)                                               <---------GLK1(2)                  <---------ANAC55(1)                                               --------->ARR14(2)                 <---------ANAC58                                               --------->ARR11(1)                 --------->ANAC55(1)                                              <---------HSFC1(2)                  --------->ANAC55(2)                                              --------->HSFB2a(1)                 <---------ANAC58                                        <---------YAB1   <---------WOX13(1)       --------->ANAC58                                     <---------ATHB12 <---------YAB1             <-------TEIL <------ZmHOX2a(2)                   <---------ATHB51<---------TOE1(2)         --------->ARR11(1) -------->ARR14(2)          ---------->DOF2   <---------HSFB2a(1)              <---------GLK1(2) -------->AGP1            --------->LBD16--------->YAB1--------->ATHB12        <---------ARR14(2) ---------ARR14(2)        --------->At5g28300 --------->HSFC1(2)     ----------->GT1<---------CCA1(2) -At5g28300              --------->RAP2.6(2) ----------->ARR10   ---------->DOF2--------->CCA1(2) ---------ARR11(3)    --------->ANAC46--------->YAB1 <---------TOE2(2)         --------->ARR14(2)----   tagatccaaattccatattgtttcaagccgtaaaccccaattataagaagattcgtatgattgaattcaaagtgtaaaacagatacgtatctagattact  21290700                                                ==================bZIP_DOF                                                <---------TGA1a           ===============================================MYC_MYB           ------->GAMYB                  <---------ARR11(3)           <----------ID1                 --------->GLK1(2)           --------->DREB2C(2)            <-----------ARR10<-----------GT1      <-----------GT1           <---------ETT(1)       <------MYB46(1)      <----------DOF2       <---------ANAC55(2)    -          --------->MYB46(3)    ==========================MYC_MYB            --------->ANAC55(2)  <--          --------->DEAR3(2)    <--------P--------->ARR14(2)      --------->ANAC58           --------        <-----------GT1      <---------TOE2(3)  <---------ANAC58  --------->ANAC58       --------->DAG2 ------>DOF2      <---------ATHB12<------MYB83  <---------ANAC58  --------->ANAC46      ---------->DOF2   aaagacattataaccgacaaatcaaaaaaccaaggttggaacaaaatctgacttgagcttttgacaacactcaagtctcatgtaacaagataaagtggta  21290800  Previous    Next  AGI:  At3g57480.1    Description:  zinc finger (C2H2 type, AN1-like) family protein. Identical to Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 (SAP13) [Arabidopsis Thaliana] (GB:Q9SCM4); similar to zinc finger (C2H2 type, AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G41835.1); similar to putative zinc finger protein [Cucumis sativus] (GB:CAI30888.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058) Range:  from: 21288913    to: 21290331    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57490.1    Description:  40S ribosomal protein S2 (RPS2D). Identical to 40S ribosomal protein S2-4 (RPS2D) [Arabidopsis Thaliana] (GB:Q9SCM3); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to unknown [Populus trichocarpa] (GB:ABK94437.1); contains InterPro domain Ribosomal protein S5, eukaryotic/archaeal; (InterPro:IPR005711); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Ribosom Range:  from: 21290643    to: 21291925    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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