Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----     --------->ARR14(2)                                                                         <----     <---------ARR14(2)            <---------ANAC58                                             <---- -----NtERF2             --------->ATHB12                                                       <---- ------ANAC46         <---------At4g35610                       <---------WOX13(1)            <------ ----->ETT(1)       <-----------RAV1(2)                       --------->ATHB12               -------- -----RAV1(1)------>ZmHOX2a(2)     <---------ANAC58        <---------At4g35610    <------ZmHOX2a(1)<-   cggagacgatttggatcgagttccagttgatttgagggcgagtgagagattgaagagattgagttgattgggattggaaacagaggagagaagcagtgtc  21265900     <---------ANAC46     <---------REM1(1)  <---------ANAC46 --------DEAR3(1) ------->ALFIN1 -----GAMYB ------DEAR3(2) ---->ETT(1)                                               --------->GLK1(2) -----At1g77200                 ----------->HVH21         <---------GLK1(2) -----DREB2C(2)            ------------>AtMYB77         <---------YAB1 -----DEAR4(1)            --------->DEAR3(1)       --------->ATHB12           <---------GLK1(1) -----DEAR3(1)            ----------->HVH21        <---------ICU4             --------->GLK1(1)     - -----ANAC46             --------->At4g35610      --------->ICU4             --------->ARR14(2)    <- -----HVH21        ---------->DOF2           <------ZmHOX2a(1)   --------->ETT(2)              ------ ->ALFIN1   <------ZmHOX2a(1)   ----------->TGA1  <---------YAB1 <---------ETT(2)              ------ --------AtMYB61>>>>>>>>>TBF1<---------DEAR3(1) <---------At4g35610       --------->ETT(1)  ---------   ggtggtgttgtagaggaagaagaaagcagcgacggtgacgatgaagaggaagatgattacgattctgtagacattgtcggaaacccatgaagagaaatct  21266000                                                                          <---------ARR11(3)                                                                          <---------ARR14(3)                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                           <---------ANAC58                                                           <---------ANAC46                                                           <---------ANAC58 ------>ZmHOX2a(2)                                                          <------NtERF2   --------->ARR14(3)                                                  --------->GLK1(2)       --------->ARR11(3)                                                 <---------ARR11(3)     --------->ANAC58                                                 <---------GLK1(2)      --------->ANAC58                                              --------->LBD16       <---------ALFIN1 ------>MYB83                               ====================HOX2a_HOX2a   --------->PCF2      ------>MYB46(1)                         ------>NtERF2      ===========================HOX2a_HOX2a  ----------->RAV1(1)                --------->ARR14(2)        <---------ARR14(2)    <------ZmHOX2a(1) --------->MYB46(3) -------->ARR11(3)  <-----------HVH21     --------->ARR14(2)    ==================HOX2a_HOX2a -----ZmHOX2a(1)<---------ARR14(2) --------->ARR11(3)   <---------RAP2.6(2)<------ZmHOX2a(2) --->TOE1(2)    --------->GLK1(2)  <---------ARR11(3)<---------AtMYB61<---------ALFIN1           ---- --->TOE2(2)<---------At4g35610<------ZmHOX2a(1) --------->ARR11(3) ----------->RAV1(1)          ---- >GLK1(1)<-------TEIL <-----------------AGL1------>ZmHOX2a(2)   ===================HOX2a_HOX2a<------   aggattttgggttcagcgaatcggtcccgactaggaagttctctgatccgagattttggtggcttaggagccacacgatcttgaaccaacatcagattca  21266100                                                                                          ------>ZmHOX2a(1)                                                                                   <------MYB46(1)                                                                                   <------MYB83                                                                                  <---------AtMYB61                                 --------->ANAC58                                <--------P ----->ANAC58                    --------->ANAC58  --------->At4g35610         <---------REM1(1) ----->ANAC58                  ---------->DOF2     <---------At4g35610         <---------ZAT6  ------ -TEIL                --------->AtMYB61 --------->GLK1(2)             ---------->DOF2   -------------   agcactaaacctccaaaacccagaccaaaacccagaagcaagactctgaattcagataacaaaatcaaatcacaaagagtagtgtaggtttcctatccag  21266200                                   <-------GAMYB                                  --------->MYB55(2)                                  --------->MYB52(2)                                  <---------MYB46(3)                                  --------->MYB111(2)                           <---------GLK1(1)            <---------ANAC58                           --------->GLK1(1)            <---------ANAC58    ---------->DOF2      <------ZmHOX2a(1)           *TSS   <---------YAB1                          < --------->ANAC58       --------->ANAC58             <--------P ------------>CBF                  --- --------->ANAC58       --------->ANAC58            <-------GAMYB                   ---------->DOF2<- --->LBD16           --------->ZAT14               <---------MYB46(3)------------>CBF             <-- ---->AGL1           <---------ZAT14    --------->ETT(1)<---------ANAC46 --------->AtLEC2       <----   ggcaaacaaagagagactctctctgcaggaaatcggttgttgtcggaatttggaggttgcttatgcttcaattcaatgcaaactgcgaaagcgaagtcgt  21266300                           <----------DOF2                         --------------->AGL15                         ------>ZmHOX2a(1)                         <---------------AGL15                        --------------->AGL15                        <-----------------AGL1              <---------WRKY38(1)             --------->WRKY18(1)        <---------ANAC46<---------------AGL15    --------->At4g35610 <-----------------AGL2    <---------At4g35610<-----------------AGL1                                    <---------YAB1    --------->ZAT2     ----------------->AGL1            <-----------GT1  <-----------GT1    <---------ZAT2     <-----------------AGL2         <------------------------ANAC81 ---------MYB52(1)     <-----------------AGL3    <---------AHL20(2)     ============================= ------>MYB52(2)       <-----------------AG     --------->AHL20(2)      <----------DOF2 ------GAMYB ------------>CBF                   <---------AHL20(1)   ---------->ID1 -------MYB46(3)  <---------ARR11(3)            <---------AHL20(2) <---------MYB46(3)        -------- -----MYB52(1)<---------WRKY12                 --------->ICU4<----------DOF2--------->ANAC55(2)   ---   tcgttgagctgcgaggtcaatgtcttcctcttttgggaatttcttagtaattttttttttttcctttgtttgttctttacgttttgattactgaaacact  21266400                                                              ------>ZmHOX2a(2)                                                              =============HOX2a_HOX2a                                                             <------ZmHOX2a(2)                                                             ==============HOX2a_HOX2a                                                            --------->ARR11(3)                                                            <---------ARR14(2)                  -----            --------->ZAT14                                 <---------ARR11(3)                  -----          --------->TGA1a                                   --------->ARR14(2)                  -----          --------->O2                                      --------->AGP1                      <----          --------->bZIP60(2)                               <---------AGP1           <---------ANAC55(2)          --------->ANAC46                                 <---------CCA1(2)     <-----------HVH21          =====================================bZIP_DOF   ----------->ARR10     --------->AtMYB61   < ===================bZIP_DOF                     <---------MYB52(2)            --------->MYB46(3)---- ->ZAT6 <---------ALFIN1            ---------->DOF2---------->DOF2  <------ZmHOX2a(1)--------->ANAC55(2) ------>REM1(1)           ------>ZmHOX2a(1)   --------->MYB46(3)   <XXXXXXXXXXXXXXXXXXXXMIR413-------   acaacaatgcccacatcactcatctatccttctatgtacaaagagacaacaactaaagagcagatctgtaggaccagagaaaccatcacatgatggaaaa  21266500                                                                                          <---------AHL20(2)                                                                                          <--------ATHB1                                           <---------AHL20(2)                             --------->AHL20(2)                                          <---------AHL20(2)                              --------->YAB1                                          --------->AHL20(2)                              <---------ICU4                                          <---------AHL20(1)                              <---------AHL20(1)       <-----------GT1        --------->AHL20(2)           --------->ZAT14          --------->YAB1 ---------->AtSPL3            <---------AHL20(2)           <---------ZAT14         --------->ZAT6 ---------->AtSPL8            --------->AHL20(1)       <---------ICU4           <---------AHL20(2) ---->DAG2 ---------->DOF2    <---------AHL20(1)    <---------ICU4             --------->AHL20(2) -----------AtSPL8           --------->AHL20(2)  --------->TOE2(3)         <-------TEIL  <---------ATHB12 -------TEIL             <---------AHL20(2)--------->AHL20(2)          <---------ICU4    --------->ICU4 ------->GT1      --------->ATHB12        --------->AHL20(1)           --------->YAB1    <---------ATHB51 --->DOF2  --------->MYB52(1)<---------AHL20(2)<---------AHL20(2)     <---------ATHB12 --------->YAB1   ggtacatattaactaaaggctgattagtttattaaattatctaatttattttcttaatgactacagagaccaataagtacatttaatactaataattttg  21266600                                                                              ---------->DOF2                                                                         ----------->GT1                   <---------ANAC46                                   <---------ATHB12               <---------At4g35610                             --------->CCA1(2)   <------ZmHOX2a(2)                                          --------->ARR11(3)                  <--  --------->ARR11(3)         ----------->GT1                  <---------ARR11(3)               <-----  <---------ARR11(3)      <-----------GT1                     --------->ARR14(2)       <----------DOF2   ttaagatcagtgtgttcaactgtgtgttatactgtataacttatacaagaatcaacacttacaagatatacaatgaagaaaaaagagagttttatggagc  21266700                                                                         --------->ATHB12                       <------ZmHOX2a(1)                                <---------YAB1                    <-----------RAV1(2)                      --------->ARR11(3)          --------->GLK1(2) -------CCA1(2)   <---------ALFIN1                           <---------ARR11(3)        --------->MYB46(3) ----At4g35610   <---------REM1(2)                       ------>ZmHOX2a(1) <---------GLK1(1)    <----   ttatctttcaccaatagtctccacaggagcaagttccattcttgaaacgatgaaacctcctaacatctctcaagatgatttctctatcaacaatctttga  21266800  Previous    Next  AGI:  At3g57420.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23590.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82225.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40788.1) Range:  from: 21263396    to: 21266253    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57430.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41923.1); similar to hypothetical protein OsJ_012988 [Oryza sativa (japonica cultivar-group)] (GB:EAZ29505.1); similar to H0613H07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66009.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 21266612    to: 21269457    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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