Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->TOE2(3)                                                             --------->TOE1(3)                                                           ------>MYB46(1)                                                           -------->P                                  --------->TOE1(2)        ------>MYB83   --------->ANAC58                               --------->ARR14(2)        <---------MYB111(2)                               <---------ARR14(2)        <---------MYB46(2)            <---------AHL20(2)                              <------ZmHOX2a(1)          <---------MYB111(1)         <----------DOF2                     <---------ETT(2)                    <---------MYB59  --------->ANAC58 --->ICU4          --------->MYB52(1)             <-----------HVH21     <---------ALFIN1      <------   atgaagacaccagaatcaaactatcgaccagaggattctacgatgttaagctcgtcggacctaccttcaatctcgcactccaatactctttaatggctaa  21235900                                               <---------TOE2(2)                                           <---------ARR11(3)                                           --------->ARR11(3)                                     --------->ANAC58                                 ---------->DOF2   ---------->DOF2   ----------->HVH21     ------>NtERF2   --------->ANAC58 <---------ANAC58      --------->LBD16   --------->ANAC58                                <------NtERF2 <---------ANAC58    <---------LBD16 --------->ANAC46      ----------->GT1          <---------ZAT6 ---------AGL15     <---------LBD16  --------->ANAC58  ---------->DOF2  <---------REM1(1)--------->At4g35610   attgagtgaccaatattgaattctcggggactcactaaaacgcaagacctaggtaaagaaagagaaaatcgaagttgtagtacctagtggcagcaataga  21236000                                                                                                <----                                                                                           <---------ICU4             <---------MYB52(1)                                                      --------->ARR14(2)          <-------TEIL                                                               <---------ARR14(2)       --------->ZAT2                                                             --------->ANAC58       --------->At4g35610                                                        --------->ANAC58       --------->HSFC1(2)                ============================HOX2a_HOX2a <---------LBD16-----       <---------HSFC1(2)                ------>ZmHOX2a(1)                   --------->ANAC46   <----       <---------HSFB2a(1)           --------->ARR14(2)                ------>ZmHOX2a(1)   --------->YAB1       --------->HSFB2a(1)           <---------ARR14(2)       ------>ZmHOX2a(2)--------->MYB46(3)   <     <------ZmHOX2a(1)        <----------DOF2                 ================HOX2a_HOX2a <---------YAB1   ctgtgaaggagcttcgtttcttagggttttagctttgagtttcctcgacaatgcttccaattgatccaaattcctctataaaccacggatatatcattac  21236100                                        <---------HSFC1(2)                                        <---------HSFB2a(1)        --------->MYB52(2)                                        --------->HSFC1(2)       <--------P                                        <---------MYB46(3)      <-------GAMYB                                        --------->HSFB2a(1)    <---------MYB46(3)                                  --------->MYB52(1)           --------->MYB55(2)                            --------->MYB46(3)                <---------ANAC46            <---------ARR14(2)       ---------->CDC5    --------->MYB52(1)                  <---------AtMYB61          <------ZmHOX2a(1) -----YAB1  <---------YAB1----------->RAV1(1)        ---------->DOF2                  <------ZmHOX2a(1) ---->ANAC55(2)       --------->ANAC58 <---------TOE2(2)    <---------MYB46(3) ----------->HVH21 -----ANAC55(2)<---------YAB1------->GAMYB <-------TEIL    <---------AtMYB61 --------->At4g35610 ---------ATHB12      --------->ANAC58 <---------TOE1(2)   --------->ALFIN1<------ZmHOX2a(1)   gaatcaagctcatcgtgataatagaagccaacagacaaacggaggttcgaaatcgaaaagagtggtggttagtagaaggacctgaagaggaggaaactga  21236200                      --------->HSFC1(2)                                          <---------YAB1                 --------->HSFB2a(2)                                           --------->ICU4                 <---------HSFB2a(2)                                   <---------SPL7                 <-----------RAV1(2)                      <---------ATHB12--------->ANAC58       <------NtERF2<---------GLK1(2)                    --------->ANAC46 --------->ANAC58       --------->ATERF1(1)                            --------->MYB46(3) --------->SPL7       --------->RAP2.3(1)                   <------ZmHOX2a(2)        <---------MYB46(3)      <---------ATERF1(1)                    ============================HOX2a_HOX2a             ----     --------->ARR14(2)                     --------->ARR11(3)    ------>ZmHOX2a(1) <------------CBF     <---------ARR14(2)                     <---------ARR11(3)  ----------->RAV1(2)--------->ATHB12    <------ZmHOX2a(1) <---------HSFC1(2)  ----------->ARR10  <---------At4g35610  --------->ICU4 <---   gaagaaggagccgcttgctccagaagcttagtcgaagaatggagaagatcagtccatccactcatctcctggtcgttcgccatacttattgagagtttga  21236300             <---------At4g35610             --------->ZAT2             --------->At4g35610             <---------ZAT2                                                                <---------MYB46(3)    <------ZmHOX2a(1)                --------->ARR14(2)                                  <---------WOX13(1)   --------->LBD16                   <---------ARR14(2)                                 <------------CBF <-----------RAV1(2)              <---------TOE2(3)              <-----------GT1       --------->ATHB12 ----->At4g35610       <-----------HVH21        --------->AHL20(2)  <---------ALFIN1  <---------AHL20(2) ------At4g35610--------->At4g35610 <------ZmHOX2a(1)          <-----------GT1    ----------->GT1   gcttcaggagaactcagcagaagaatgtcaagggtttaggattcgaacattttaaaatcagtttttttctccacttactcaaaccggtttaattggttcg  21236400                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                             --------->SPL7                                                                         --------->ANAC46                                                                         --------->ANAC58                                                                         --------->ANAC55(1)                                                                         --------->TGA1a                                                                         --------->O2                                                                         --------->ANAC58                                                                         --------->bZIP60(2)                                                                      <---------REM1(2)                                                                     <-----------HVH21                                <---------AHL20(2)                  --------->ANAC58                               <---------AHL20(1)                   --------->O2                               --------->YAB1                       ----------->HVH21               -                      <---------------AtSPL8                        --------->ANAC46                -                      --------->MYB59                               --------->ANAC58              ---                      --------------->AtSPL8            ---------->DOF2<---------ALFIN1           ---                      --------------->AtSPL3            ======================bZIP_DOF        -------                   --------->ARR14(2)       ==================================bZIP_DOF    -----------                   <---------ARR14(2)       ---------->DOF2         --------->TGA1a       -----------         ------>ZmHOX2a(1)     <---------AHL20(2) ---------->DOF2   --------->bZIP60(2)  <---------At4g35610        --------->TOE2(3) ------------>CBF  --------->MYB52(1)    --------->ANAC46       --------->At4g35610  <---------YAB1---------->ID1 --------->AHL20(2) =================================bZIP_DOF   <------   ggtcttgattccttatttgtcgattcggtacaataaaattcaaaaccaaaggaaaagagaaagaagacacacgacacggcacgacctatttagctgtaca  21236500 ----->MYB46(1) ----->MYB83                                                      --------->HSFC1(2) ------>MYB46(3)           <---------ARR11(3)                     --------->HSFB2a(1) ------>AtMYB61            --------->ARR11(3)         ---------->DOF2 -->ZAT14         ------>NtERF2          <---------At4g35610      <---------HSFC1(2) ---->AtSPL3    <---------ANAC58        <---------TOE1(3)         <---------HSFB2a(1) ---->AtSPL8    <---------ANAC58        <---------TOE2(3)         <---------At4g35610        <------- ---ZAT14   <------------CBF        <----------DOF2<------ZmHOX2a(1)    <<<<<<<<<TBF1       ---------   ccaactgttcgacgaattgcctccttgaacatctcatactttaagcttatggaggaaaaagactgggaagcttcttcttcgagcgaaaacgaaggtggtt  21236600                                        <---------ZAT18                                        --------->ZAT18                                     <---------ANAC58    --------->At4g35610                                     <---------ANAC58    ----------->GT1                                    <-----------------------TaNAC69(2)          ----------->TGA1      <---------MYB46(3)       <---------At4g35610        <---------ICU4         <---------AtMYB61       <-----------RAV1(2)<----------DOF2       --------->ICU4         <---------MYB52(1) <---------At5g28300      <---------DAG2 --MYB46(3)                 <-----------RAV1(1) <-----------GT1   <---------TOE2(3)  <---------ATHB12 >ALFIN1--------->YAB1<-------TEIL <---------ZAT14   <-----------HVH21 <-----------GT1--------->YAB1   ttccaaacgatgatgacgaagagtttcattctggtggttcagtgcccaagttacagttcaggtgaatttagatttacttttgcccaaatcataaactgct  21236700                                                                           <-------GAMYB                                                                          <---------MYB46(3)                                                                         <-------TEIL                                                                     --------->ANAC46                                                               =====================================HOX2a_HOX2a                                                               ------>ZmHOX2a(2)                                                              <---------HSFB2a(1)                                                              --------->HSFB2a(1)                                                              <------ZmHOX2a(2)                                                             <-----------ARR10                     <-                                                             <---------ARR11(3)                    <-                                                             --------->ARR11(3)                    <-                                                             <---------ARR14(3)              <------ZmHOX2a(1)                                                             --------->ARR14(3)       --------->ZAT14                          <---------DAG2                     <---------ARR14(2)       <---------ZAT14         --------->TOE2(3)<----------DOF2                    --------->ARR14(2)     <---------ANAC55(2) <---------WRKY12   <---------GLK1(2)                       <------ZmHOX2a(1)<---------TOE1(2)    <--   aagtcaactaatcttagactcagtttctctttttgttttttgtgtttgcaaaatgtagagtaggatcttccaaggctcgttggattactgaactaggaat  21236800  Previous    Next  AGI:  At3g57350.1    Description:  nucleoporin interacting component-related. similar to nucleoporin interacting component family protein [Arabidopsis thaliana] (TAIR:AT2G41620.1); similar to Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] (GB:ABD28395.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23623.1); similar to hypothetical protein OsI_011228 [Oryza sativa (indica cultivar-group)] (GB:EAY89995.1); contains InterPro domain Nucleoporin interacting component; (InterPro:IPR007231) Range:  from: 21231365    to: 21236283    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57360.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23622.1) Range:  from: 21236549    to: 21237662    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version