Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------ALFIN1                                                                                 <---------ZAT14                                                                                 --------->LBD16                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                                --------->LBD16                                                                                --------->ANAC46                                                                               <---------HSFB2a(2)                                                                               --------->HSFB2a(2)                                                                               <---------LBD16                     <---------At4g35610                                      <-----------------AGL1                  <------NtERF2                                           --------->At4g35610                 <-----------TGA1                                         <---------At4g35610                 <-----------HVH21                                        <---------ATERF1(1)                <---------ANAC58                                          ------>NtERF2                --------->bZIP60(1)                                      --------->DEAR3(1)                --------->TGA2(1)                                        --------->RAP2.3(2)                <---------TGA2(1)                                       --------->RAP2.3(1) ---------                <---------ANAC46            ------>ZmHOX2a(1)          ------>NtERF2        ---------       <----------DOF2                 <----------DOF2                 --------->LBD16      <-------- --------->MYB46(2)<-----------RAV1(2)<---------ANAC58                 <---------ATERF1(1)  <-------- -------P<---------YAB1           <---------MYB52(1)                  --------->DEAR3(1)    <-------- ---------HVH21 <---------bZIP60(1)   <---------ANAC58                --------->ANAC46      --------- ------RAV1(2)  <---------ANAC58<---------YAB1                       <---------LBD16        ---------   ggttaggcgctattagtggcgtcaggtcatagttctgtttgctttcctccatcgtcgctaatctctcaatctccgccgcttcccgcactggcaaaatctt  21210100      <------NtERF2    --------->ANAC58    --------->ANAC58    --------->ANAC46                                                              ------------>CBF   --------->RAP2.6(3)                                                  --------->ARR14(2) >ARR11(3)                                     <---------CCA1(2)        <---------ARR14(2) >ARR14(2)                                   ======================================================== -ARR14(3)                                   <---------------AGL15  <---------HSFB2a(2)     --------- ---ARR10                                --------->ARR11(3)         --------->HSFC1(1)    --------->YAB1 -ARR11(3)                              --------->RVE1(1)   <---------TOE2(3)   <----------DOF2 >GLK1(2)<------NtERF2           ----------->GT1            <---------TOE1(3) --------->At4g35610 >ARR14(3)                 ----------->HVH21 ------>ZmHOX2a(1)*TSS  --------->HSFB2a(2) <-----------TBP   cttaagacggcagagatgaagtttcagagacgacgaggtaaaaaatcctgtatattgaaattagggttttctcgaatatgagctttcaatatttataaat  21210200                                                                                          --------->SPL7                                                                                          --------->MYB52(1)                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                        <---------SPL7                                                                                       <---------ATERF1(1)                                                                                       <---------DEAR3(2)                              <---------------AGL15                                   <---------ATERF1(2)                             --------->ANAC46                                         --------->RAP2.6(2)                             <-----------------AG                                     <---------MYB46(3)                             <-----------------AGL1                                  --------->SPL7                --------->AHL20(1)     <---------RVE1(1)                    <---------At4g35610                <---------AHL20(1)     <---------CCA1(1)                 --------->DOF5.7(2) --------                --------->ARR11(3)    <---------ARR11(3)                 <---------MYB52(1)<---------LBD16    <----------DOF2        <-----------GT1 <---------AHL20(2)         <------NtERF2<---------SPL7 ---    <---------DAG2<------------CBF  --------->ANAC58                 <---------RAP2.6(3)<---------MYB52(1) =============================================MADS_MADS             --------->DEAR3(1)--------->ATERF1(2) -->TBP        <---------CCA1(2)    --------->ANAC58      --------->DOF5.7(2)     ------>ZmHOX2a(2)   tcgcccctttacttcttatatattgttgtttaccccacaaggtatttttatctccaaaacgataacttagccgtcgttatctgatcggccggtaccggag  21210300                   <---------AHL20(2)                  --------->AHL20(2)               <--------HAHB4               --------->ATHB51               -------->HAHB4               <---------ICU4               <--------ATHB1               --------->YAB1              --------->AHL20(2)              --------->ICU4              <---------YAB1                 --------->At5g28300            --------->YAB1                  ----------->GT1                                         -          --------->AHL20(2)               --------->ANAC58                                        --          --------->AHL20(1)               --------->ANAC58         <---------SPL7                ---       --------->AHL20(2)                 --------->SPL7           <---------ANAC58              ----   ----------->GT1<---------AHL20(2)     <---------ALFIN1          <---------ANAC58              ----   <---------TOE2(3)                    --------->ZAT18            <---------ANAC46            <----- ->LBD16 --------->YAB1                 <---------SPL7        <---------MYB52(1) --------------->AtSPL8 -------->GT1 <---------ATHB51      --------->ALFIN1  <----------DOF2 <---------TOE2(2)   <----------DOF2   gggttaagaaaaaataataattaaatgttttttgtggagaggcgcacggtaagaagctttattcgtttggcgtatgttagtagtctggacttctttctgt  21210400        <---------ZAT14        <---------ZAT18        --------->ZAT18   <-------TEIL ----------->RAV1(2)  <---------TOE1(2) ----->NtERF2      <---------ANAC58 ------->DEAR3(1)  <---------ANAC46 ------>DEAR3(2)   <---------ANAC58                                              <---------HSFB2a(2) ----->SPL7    <---------ANAC58      <---------DAG2                *TSS          --------->HSFB2a(2) --->TEIL      <---------ANAC58   <-----------GT1        --------->YAB1     <<<<<<<<<TBF1         <-- ----ZAT14 <---------MYB52(2)  <----------DOF2      ------>ZmHOX2a(1)<---------TOE2(3)      <--------   accgcctgtgtccactaacttgcgcatgttcgtctttaacctttcgccctcttcctctatcatactggattagggttcttcttcgagacgaactcttttt  21210500                                                                                             ------>ZmHOX2a(2)                                                                                             ========                                                                                             ========                                                                                            <------ZmHOX2a(2)            --------->HSFB2a(1)     <------ZmHOX2a(1)                                       =========     ----------->TGA1             <---------TOE1(3)                                         =========     ----------->HVH21            <---------TOE2(3)                                        <---------ARR14(2)   --------->O2       <---------HSFC1(1)                       <---------ANAC46            --------->ARR14(2)   <---------O2       --------->HSFB2a(2)                     <------NtERF2                ------->TEIL --------DOF2         <---------HSFB2a(2)                    ------>NtERF2       <---------CCA1(2) --DOF2    ------->TEIL      <----------DOF2                --------->ANAC46   --------->ANAC46------   ctttctcgtgacgaatgtttctgtctagaagcttttaaggattaagactctccaaaattttgacgccgtgttattctcttcccgtctctcatggatcctt  21210600                              --------->GLK1(2)                              <-----------ARR10                              ------->TEIL                              <---------ARR11(1)                              <---------ARR14(2)                              --------->ARR14(2)                      <---------SPL7                      ==========================HOX2a_HOX2a              <------ZmHOX2a(1)         --------->DEAR3(1)  <---------CCA1(2)                   <---------AHL20(2)       --------->MYB52(1)    <---------ARR14(1)        <------MYB46(1)      <---------ALFIN1------>ZmHOX2a(1)                <------MYB83      --------->AtMYB61  <---------ANAC55(2)          --------->MYB59         <---------ANAC58     --------->MYB46(3)  <---------ANAC46           <---------MYB52(1)        <---------ANAC58 ====================HOX2a_HOX2a                   <-------GAMYB<---------AHL20(1) ============================HOX2a_HOX2a           <-----------HVH21      <---------GLK1(1) ====================HOX2a_HOX2a                  <---------MYB46(3)      --------->GLK1(1) <-------- ============================HOX2a_HOX2a ------>ZmHOX2a(2)      <---------AHL20(2)         <<<<<<<<<<MYB80 >ZmHOX2a(1)  ==================================HOX2a_HOX2a     --------->AHL20(2)        <---------MYB46(3)   caagacgaccaccgaaggactctccttacgcgaatctattcgatctcgaggtctgttaggtctcaatttttttgtgatttccttgaaattgatggtttgt  21210700                  ----------->HVH21                --------->ANAC55(2)                --------->ARR11(3)                <---------ANAC55(2)                <---------ARR11(3)            --------->ARR11(3)                    <---------GLK1(1)            <---------ARR11(3)                    --------->GLK1(1)           --------->YAB1                    <---------WOX13(1)                    <---------ZAT14          --------->ICU4                   --------->ATHB12                        --------->ZAT14          <---------YAB1               <---------AtMYB61            <---------ANAC58    <---------MYB46(3)        ------->TEIL <---------MYB46(3)       <---------ANAC58 -ANAC46--------->YAB1     <---------YAB1 <---------YAB1            <---------GLK1(2)               <   acttgttggatgatgatcatgtgactgtgatgaatgtagttttggtgattggaaatcttgcaattgtatagcttctccttgtttctacagtgtgtttttg  21210800                                                      <---------MYB52(1)       --------->TOE1(3)                                                    <---------MYB46(3)        ----------->RAV1(2)                                                  ------>NtERF2             <---------ARR14(2)                --------->ALFIN1                  <---------At4g35610     --------->LBD16         <--   <---------ZAT6 --------->ALFIN1         <---------ICU4            <---------GLK1(1)          <---- <---------At5g28300     <-----------RAV1(1)   XXXXXXXXXXXXXXXXXXXX>MIR780.1--------->ARR14(2) <----- -----------GT1 <-----------RAV1(1)       <---------YAB1             --------->GLK1(1)         ------   ttttactgttgaaattcagtgtgggttttgtggctaaattcttcattcttgcagccgttgatgaagtttagaattccgaaacctgaagatgaagttgatt  21210900                                                                                 ------>MYB83                                                                                 ------>MYB46(1)                                                                                --------->MYB55(1)                                                                               <---------MYB111(2)                                                                               <---------MYB46(2)                                                                               <---------MYB55(2)                                                                               <---------MYB111(1)                                 --------->ANAC58 --------->ATHB12             --------->MYB46(3) -------YAB1             <---------------------WRI1 <---------WOX13(1)<---------DAG2              --- -----ICU4           ---------->DOF2             <---------AHL20(2)   <----------DOF2             --- ----YAB1        <------ZmHOX2a(1)       <-------TEIL    <----------DOF2     ------>NtERF2      ----- --->ICU4       --------->ICU4   --------->ANAC58<---------YAB1      <---------YAB1  <---------YAB1   attatgggagtagtagccaggatgaaagtagaagcactcaaggtacagtttttaattggttttatggaattacttttgccacctactgtgatagttttaa  21211000  Previous    Next  AGI:  At3g57290.1    Description:  EIF3E (eukaryotic translation initiation factor 3E). similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70094.1); similar to unknown [Populus trichocarpa] (GB:ABK95989.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23640.1); contains InterPro domain Eukaryotic translation initiation factor 3, subunit 6 (InterPro:IPR016650); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 21207529    to: 21210162    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57300.1    Description:  transcriptional activator, putative. similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G12810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23635.1); similar to hypothetical protein OsJ_010407 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26924.1); similar to transcriptional activator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95950.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like Range:  from: 21210467    to: 21218864    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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