Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                --------->ANAC46                                                         <---------ICU4      --------->ZAT14                                                         --------->YAB1      <---------ZAT18                                   --------->YAB1     --------->YAB1         <---------ZAT14                       --------->ANAC46              <-------TEIL   <---------MYB52(2)--------->ANAC58   ctagcgacaacctctgttcttctctccaccatttctatcaccacaaatttcaacattcatcatcaaacaaacaaaccagtacacaaaaacgcaaattcac  21209800                                                                                     -------->P                                                                                    --------->WOX13(1)                                                                                  <---------ATHB12                                                                             <---------ANAC58                                                  <---------ANAC46           <---------ANAC58                  --------->ANAC46               <---------AtMYB61           <---------ANAC46             <------ZmHOX2a(1)                   --------->ALFIN1            --------->ANAC55(2)       --------->LBD16                          --------->ZAT14      --------->ARR14(2)   --------->ARR14(2)              <------ZmHOX2a(1)                 <---------ARR14(2)   <---------ARR14(2)      --------->ARR11(3)   <---------ZAT14      <---------ARR11(3)     <-------TEIL  --------->GLK1(1)     --------->YAB1     <---------ZAT14--------->GLK1(2)  <---------ANAC55(2)  ---   agacatatccagagaggaatacacaagaataccttgaggagcgtcttcagtgtggtagagactcttgtgaatatccatggcgtaatcaaccatgttcgtc  21209900                                 <---------------AGL15                               <---------At4g35610                               --------->At4g35610                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                            <---------GLK1(1)                            --------->GLK1(1)                           --------->ARR14(2)                           <---------AGP1                           <---------ARR14(2)                           <---------ARR11(3)                           --------->ARR11(3)      XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E                           <---------ARR14(3)   ----------->HVH21                           <-----------ARR10  --------->At4g35610                                  <-                           --------->GLK1(2)--------->DAG2                                        <--    ---------->DOF2        --------->ARR14(3) <---------At4g35610                                <xxx -------->GT1             <------ZmHOX2a(1)---------->DOF2                  <------ZmHOX2a(1)  <-----   tggttcaaaagctggattttagacttcaggatctgctcatcagggtaaagctgacgctcttgaaggaactcgaatataggaaacaccaagtgtctgtcca  21210000                                                                                  <---------ALFIN1                                                                                 --------->LBD16                                                                                 <---------ZAT14                                                                                --------->LBD16                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC46                                                                               <---------LBD16                                                                               <---------HSFB2a(2)                     <---------At4g35610                                       --------->HSFB2a(2)                  <------NtERF2                                               <-----------------AGL1                 <-----------HVH21                                        <---------At4g35610                 <-----------TGA1                                         --------->At4g35610                <---------ANAC58                                          ------>NtERF2                <---------ANAC58                                          <---------ATERF1(1)                --------->TGA2(1)                                        --------->RAP2.3(2)                <---------TGA2(1)                                        --------->DEAR3(1)                <---------ANAC46                                        --------->RAP2.3(1) ---------       <----------DOF2                      ------>ZmHOX2a(1)          <---------ATERF1(1)  <-------- --------->MYB46(2)<-----------RAV1(2) <----------DOF2                 ------>NtERF2        <-------- -------P<---------YAB1           <---------MYB52(1)                   --------->LBD16      --------- ---------HVH21 <---------bZIP60(1)   <---------ANAC58                --------->ANAC46      --------- xxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------YAB1                        --------->DEAR3(1)    <-------- ------RAV1(2)  --------->bZIP60(1)   <---------ANAC58               <---------LBD16        ---------   ggttaggcgctattagtggcgtcaggtcatagttctgtttgctttcctccatcgtcgctaatctctcaatctccgccgcttcccgcactggcaaaatctt  21210100      <------NtERF2    --------->ANAC58    --------->ANAC58    --------->ANAC46                                                              ------------>CBF   --------->RAP2.6(3)                                                  --------->ARR14(2) >GLK1(2)                                      <---------CCA1(2)        <---------ARR14(2) -ARR11(3)                                   ------>ZmHOX2a(1)      --------->HSFB2a(2)     --------- ---ARR10<------NtERF2                       ======================================================== >ARR14(2)                               --------->ARR11(3)   *TSS  --------->HSFC1(1)    --------->YAB1 >ARR14(3)                              --------->RVE1(1)   <---------TOE2(3)   <----------DOF2 -ARR14(3)                       ----------->GT1            <---------TOE1(3) --------->At4g35610 >ARR11(3)                 ----------->HVH21 <---------------AGL15  <---------HSFB2a(2) <-----------TBP   cttaagacggcagagatgaagtttcagagacgacgaggtaaaaaatcctgtatattgaaattagggttttctcgaatatgagctttcaatatttataaat  21210200                                                                                          --------->MYB52(1)                                                                                          --------->SPL7                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                        <---------SPL7                                                                                       <---------ATERF1(1)                                                                                       <---------DEAR3(2)                              <---------------AGL15                                   --------->RAP2.6(2)                             <-----------------AGL1                                   <---------MYB46(3)                             <-----------------AG                                     <---------ATERF1(2)                             --------->ANAC46                                        --------->SPL7                --------->AHL20(1)     <---------CCA1(1)                    <---------At4g35610                <---------AHL20(1)     <---------RVE1(1)                 <---------MYB52(1)<---------LBD16                --------->ARR11(3)    <---------ARR11(3)                 --------->DOF5.7(2) --------    <---------DAG2<------------CBF  --------->ANAC58                  <------NtERF2<---------SPL7 ---    <----------DOF2        <-----------GT1 <---------AHL20(2)        <---------RAP2.6(3)<---------MYB52(1) -->TBP        <---------CCA1(2)    --------->ANAC58                --------->DEAR3(1)--------->ATERF1(2) =============================================MADS_MADS   --------->DOF5.7(2)     ------>ZmHOX2a(2)   tcgcccctttacttcttatatattgttgtttaccccacaaggtatttttatctccaaaacgataacttagccgtcgttatctgatcggccggtaccggag  21210300                   <---------AHL20(2)                  <---------AHL20(2)               -------->HAHB4               <--------ATHB1               <---------ICU4               <--------HAHB4               --------->YAB1               --------->ATHB51              --------->AHL20(2)              <---------ATHB51              --------->ICU4                 --------->At5g28300            --------->YAB1                  ----------->GT1                                         -          --------->AHL20(1)               --------->ANAC58                                        --          --------->AHL20(2)               --------->ANAC58         <---------SPL7                ---       --------->AHL20(2)                 --------->SPL7           <---------ANAC58              ----   ----------->GT1--------->AHL20(2)     <---------ALFIN1          <---------ANAC58              ----   <---------TOE2(3)                    --------->ZAT18            <---------ANAC46            <----- ->LBD16 --------->YAB1                 <---------SPL7        <---------MYB52(1) --------------->AtSPL8 -------->GT1 <---------YAB1        --------->ALFIN1  <----------DOF2 <---------TOE2(2)   <----------DOF2   gggttaagaaaaaataataattaaatgttttttgtggagaggcgcacggtaagaagctttattcgtttggcgtatgttagtagtctggacttctttctgt  21210400        --------->ZAT18        <---------ZAT14        <---------ZAT18   <-------TEIL ----------->RAV1(2)  <---------TOE1(2) ----->NtERF2      <---------ANAC58 ------->DEAR3(1)  <---------ANAC58 ------>DEAR3(2)   <---------ANAC46                                              <---------HSFB2a(2) --->TEIL      <---------ANAC58      <---------DAG2                *TSS          --------->HSFB2a(2) ----->SPL7    <---------ANAC58   <-----------GT1        --------->YAB1     <<<<<<<<<TBF1         <-- ----ZAT14 <---------MYB52(2)  <----------DOF2      ------>ZmHOX2a(1)<---------TOE2(3)      <--------   accgcctgtgtccactaacttgcgcatgttcgtctttaacctttcgccctcttcctctatcatactggattagggttcttcttcgagacgaactcttttt  21210500                                                                                             ------>ZmHOX2a(2)                                                                                             ========                                                                                             ========                                                                                            <------ZmHOX2a(2)            --------->HSFB2a(1)     <------ZmHOX2a(1)                                       =========     ----------->TGA1             <---------TOE2(3)                                         =========     ----------->HVH21            <---------TOE1(3)                                        ------->TEIL   --------->O2       <---------HSFC1(1)                       <---------ANAC46            <---------ARR14(2)   <---------O2       --------->HSFB2a(2)                     <------NtERF2                --------->ARR14(2) --------DOF2         <---------HSFB2a(2)                    ------>NtERF2       <---------CCA1(2) --DOF2    ------->TEIL      <----------DOF2                --------->ANAC46   --------->ANAC46------   ctttctcgtgacgaatgtttctgtctagaagcttttaaggattaagactctccaaaattttgacgccgtgttattctcttcccgtctctcatggatcctt  21210600                              --------->ARR14(2)                              <---------ARR11(1)                              ------->TEIL                              --------->GLK1(2)                              <---------ARR14(2)                              <-----------ARR10                      <---------SPL7                      ------>ZmHOX2a(1)              <------ZmHOX2a(1)         --------->DEAR3(1)  <---------ARR14(1)        <------MYB83       --------->MYB52(1)    <---------CCA1(2)         <------MYB46(1)      --------->AtMYB61  <---------ANAC46             --------->MYB59         <---------ANAC58      <---------ALFIN1==========================HOX2a_HOX2a      <---------AHL20(2)     --------->MYB46(3)  <---------ANAC55(2)        <---------MYB52(1)        <---------ANAC58 ============================HOX2a_HOX2a           <-------GAMYB<---------AHL20(1) ====================HOX2a_HOX2a                   <-----------HVH21      <---------GLK1(1) ====================HOX2a_HOX2a                  <---------MYB46(3)      --------->GLK1(1) <-------- ============================HOX2a_HOX2a ------>ZmHOX2a(2)      <---------AHL20(2)         <<<<<<<<<<MYB80 >ZmHOX2a(1)  ==================================HOX2a_HOX2a     --------->AHL20(2)        <---------MYB46(3)   caagacgaccaccgaaggactctccttacgcgaatctattcgatctcgaggtctgttaggtctcaatttttttgtgatttccttgaaattgatggtttgt  21210700  Previous    Next  AGI:  At3g57290.1    Description:  EIF3E (eukaryotic translation initiation factor 3E). similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70094.1); similar to unknown [Populus trichocarpa] (GB:ABK95989.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23640.1); contains InterPro domain Eukaryotic translation initiation factor 3, subunit 6 (InterPro:IPR016650); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 21207529    to: 21210162    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57300.1    Description:  transcriptional activator, putative. similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G12810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23635.1); similar to hypothetical protein OsJ_010407 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26924.1); similar to transcriptional activator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95950.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like Range:  from: 21210467    to: 21218864    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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