Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->ANAC55(2)                                                                           <---------ANAC55(2)                                                      --------->DAG2     <-----------GT1     --------->DAG2         <----------DOF2<---------------AGL15      --------->MYB52(2)            -    ---------->DOF2 <---------AtLEC2       <----------DOF2        <---------YAB1      --------->MYB52(1) -----ZmHOX2a(1)    --------->ANAC55(2)    --------------->AGL15 <---------AHL20(1)   <---------LBD16 --->TOE1(2)  <---------TOE2(3)      <----------DOF2---------->DOF2   <---------MYB46(3)          ---   aggagaaaaagtttttaagtttacatgactctttttcttctttctcttttttgagaaaggcgattaatatgtttgttacgaattagactacgggagaaat  21120200                                         --------->SPL7                                       <---------SPL7                                     --------------->AtSPL3                                    --------->ZAT14                                    --------->ZAT18                                    <---------ZAT18                                   --------->ALFIN1                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <---------ZAT14      ----------->GT1                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxx>smallRNA(i)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->CCA1(2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(1)                  <                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ARR11(3)        <---------ARR11(3)                         --------->SPL7xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ARR11(3)        ---------->DOF2<---------SPL7<---------------AtSPL3     <---------AHL20(1)        <---------GLK1(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxx  <-------TEIL       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->AHL20(2)     ---------->DOF2 -------->At5g28300  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->AHL20(2) ------->TEIL  <------ ------>ANAC46      <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------TEIL <---------AHL20(2)   acggtacatggaaagtgtgttttgcggtacgagagaagtgcggtacgattcaaatagttacaaaaatatatagatacatatgtatatataaagattttga  21120300                        <----------DOF2                        <---------ARR14(2)                     <---------RAP2.6(2)                    <---------ZAT18                    --------->ABI4(2)                  <---------SPL7                 <---------ANAC58                 <---------ANAC58                <---------DEAR3(1)                <---------ANAC46                <---------ANAC58                <---------ANAC58               <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <xxxxxxxxxxxxxxxxsmallRNA(i)               <---------LBD16              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxx>smallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(s)            xxxxxxxxxxxxxxxx>smallRNA(i)                                          --------->YAB1  <--            xxxxxxxxxxxxxxxx>smallRNA(s)  --------->GLK1(2)                      <---------YAB1   ---    ---------->DOF2--------->ALFIN1   --------->YAB1                           --------->YAB1  ------ ---------ZAT6xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------AHL20(2)        <----- xxxxxxxxxxx>smallRNA(le3)       <---------YAB1                    <---------AHL20(2)         ------- ---YAB1   <-----------RAV1(1) <-----------GT1          --------->ETT(2)      --------->ICU4 <-------   tactgttaaagcactgttgcggtgcggtttttgttaccattcacaatctatatgtttgtcgatacttatatttttttgtatttatgataaaacttattaa  21120400 -------AHL20(2)                                                 --------->ARR11(3) ------>AHL20(2)                                            ---------->DOF2 --->AHL20(2) <---------bZIP60(1)                   --------->AHL20(2) ----AHL20(2) --------->bZIP60(1)                 --------->AHL20(2)                       <--------- -->AHL20(2)  ----------->GT1                <---------AHL20(2)  <---------ARR11(3)--------->ARR14(2) --YAB1    <---------YAB1                   --------->AHL20(2)  <------ZmHOX2a(1)  <---------ARR14(2)   aaaaatgaagatgatgatgtgatatgttatacacatattttttgtataaaatttttatatagaaaaggatttttagatttatgcatatatgatatactgt  21120500                                                           ---------->DOF2                                             --------->ALFIN1                                    ----                                             <---------AtMYB61                               --------                                           <---------MYB46(3)      --------->ANAC46          *TSS----                   ----------->GT1        <---------DEAR3(1)    ---------->DOF2        ------>ZmHOX2a(1)   ------->TEIL    <---------ANAC46      --------->At4g35610--------->DAG2            --------->TOE1(3) --GT1           ----------->GT1   ---------->DOF2      ----------->TBP------>NtERF2  --------->TOE2(3)   atatgtatattttcaaatatggtgtaaaatactaaaatcaagcggctgtggtagtagtatataaagcaaaggccacctattatctaatccttaaaaatcc  21120600                          <---------AHL20(2)                     --------->AHL20(2)                     <---------AHL20(2)                     <---------AHL20(1)                 <---------ICU4                               <---------At4g35610                  --                --------->ICU4             ---------->ID1     --------->At4g35610     --------->AHL20(1)     --------->ARR11(3)   <---------AHL20(1)                <---------ZAT14           <---------AHL20(1)     <---------ARR11(3)   --------->AHL20(2) <----------DOF2--------->ZAT14           --------->ARR11(3) -->ZmHOX2a(1)  <---------YAB1         <----------DOF2   <---------At4g35610        <---------ARR11(3) ->ARR11(3)   --------->YAB1      <------ZmHOX2a(1)      ------>ZmHOX2a(1)          <---------AHL20(1) ----->AtLEC2<---------YAB1     <---------TOE2(3)<-----------GT1                    --------->AHL20(1)   tgcaaaagatttgttttcattattttattttatttaggaaactttgtcttttttccttcctctgcgctgtcttcttcaaaaaacaaaatattttgttttt  21120700                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                                --------->MYB59                                                                                --------->MYB111(1)                                                                              --------->ARR14(1)                                                                              --------->CCA1(2)                                                                             --------->ARR11(3)                       --------->ANAC46                                      --------->ARR14(2)                 <----------DOF2                                             <---------ARR14(2)     -                <---------ANAC58                                   <----------DOF2        -----------            <----------DOF2                              ---------->ID1      --------->ARR11(1)  ----         <-----------GT1       ---------->DOF2           <-----------GT1   ----------->ARR10 >>>>>>>> -------->ID1   <---------ANAC58                        <-----------GT1    --------->ICU4>>>>>>>>>TBF1   tgttctattagtaactttgctttctccacaattcaaagctaatttagttctattcatttttccctctctcttttgcaaagatttggtagaagaagaaaaa  21120800                      ------>ZmHOX2a(2)                    --------->ARR11(3)                    <---------ARR11(3)                    --------->ARR14(2)                    --------->AGP1                    <---------ARR14(2)                    <---------AGP1                    --------->ARR14(3)                    <---------ARR14(3)              --------->WOX13(1)          --------->YAB1          <---------ZAT18    ----------->GT1<---------CCA1(2)           <-----------GT1 --------->DOF2  --------->YAB1   --------->ZAT18                                --------->AHL20(2) >GT1  --------->YAB1<------ZmHOX2a(2)    <----------DOF2                  --------->TOE2(3) ----->AHL20(2) <---------ATHB12  <---------ZAT14                     <---------At4g35610 >>GT-3b <---------YAB1           --------->ZAT14       ------>ZmHOX2a(1) ----------->GT1 ---------->DOF2   taaaaagagttataatcaatcagatcttgttttaagtgcagactctttatttctcttcctcacctaagcttcagcatcgtaaatttaaaactaaaatcgc  21120900                            <---------AHL20(2)                           <---------WOX13(1)                         <--------ATHB1                         --------->ATHB51                         --------->ATHB12                         -------->HAHB4                         <---------ICU4                        <---------ATHB51                  ----------->GT1                ---------->DOF2<---------WOX13(1)               <------ZmHOX2a(1)            --------->CCA1(2)--------->ATHB12       --------->LBD16  --------->ICU4      --------->LBD16   --------->AHL20(2)                            <----------DOF2     <---------LBD16    <---------AHL20(2)                 --------->DAG2                     <------  --------->ARR14(2)    <---------YAB1                    ---------->DOF2   ----------->RAV1(2)    --  <---------ARR14(2)--------->AHL20(2)        ------------------------>ANAC81      <-------TEIL  ----   atcaaatcccggagataggaaagaaaataattgattgtttctagtgaagaacaaaaaaaaaaaagtcgaagactttacatctgggttcatcgatttgaga  21121000         <---------AHL20(2)       <----------DOF2   ------>ZmHOX2a(2)                              <---------ARR14(2)  <------ZmHOX2a(2)                               <---------GLK1(2) --------->ARR14(2)                               --------->ARR14(2) <---------ARR14(2)                           --------->At4g35610 --------->ARR11(3)                           <---------At4g35610 --------->ARR14(3)                           <------NtERF2 <---------ARR11(3)                           --------->ZAT2 <---------ARR14(3)                           <---------ZAT2 --------->AGP1                              ----------->RAV1(1)                     <---------AHL20(2) <-----------ARR10            <---------------AGL15                            --------->YAB1 ---TOE2(3)                   --------------->AGL15                   <---------At4g35610 --------->ARR10             <-----------------AGL1         <-------TEIL<---------MYB46(3) ----->CCA1(2)               <-----------------AGL2     <---------TOE1(2)     <---------YAB1  ------>ZmHOX2a(2)   taagatcttctttatttgttatcttcaagtttctgcaatgggtatggcagcagaatcgcagtttcatgttttagctgttgatgatagtttatttgatcgg  21121100  Previous    Next  AGI:  At3g57040.1    Description:  ARR9 (RESPONSE REACTOR 4); transcription regulator. Identical to Two-component response regulator ARR9 (ARR9) [Arabidopsis Thaliana] (GB:O80366); similar to ATRR3 (RESPONSE REGULATOR 3), transcription regulator [Arabidopsis thaliana] (TAIR:AT2G41310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63061.1); contains InterPro domain Response regulator receiver; (InterPro:IPR001789); contains InterPro domain CheY-like (InterPro:IPR011006) Range:  from: 21120593    to: 21122411    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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