Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->WOX13(1)                                               <---------ARR14(2)                                 <--               <---------AHL20(2)              --------->GLK1(2)                                <----               --------->AHL20(2)              --------->ARR14(2)                              ------            <----------DOF2                   --------->RVE1(1) --------->YAB1                 <-----       --------->YAB1               <---------ANAC46      --------->YAB1                       <-----      <---------YAB1          <---------YAB1--------->AHL20(2) <---------ATHB12          --------->ZAT6  <---------DAG2              <---------AHL20(2)       --------->YAB1                   <---------ZAT18  <----------DOF2             --------->AHL20(2)   --------->LBD16<---------YAB1        --------->ZAT18   tgtgctttatcattcttttaattctgtttcatataattgtgggaaaaaaaatccgaaaaataacaatcatcttagaaaattgtgagtttgagcactagat  21087100    <---------YAB1                                                                               <---  <---------AHL20(2)                                                                    <---------AHL20(2) <---------AHL20(2)                                                                    <---------AHL20(2) -------AHL20(2)                                                                   <----------DOF2 -----RVE1(1)                                                         <---------ANAC55(2)       ----- --->ARR11(3)                    <---------AHL20(2)                   --------->ANAC55(2)     ------- ----ARR11(3)      <----------DOF2                      <---------GLK1(1)     <-----------GT1 <------ ----GLK1(2)   <-----------GT1   --------->AHL20(2)     --------->GLK1(1)   <-----------GT1  <-------   ttttttatttttaaaattctcctttttagttgtatttatatataccagaatggtctggatatcaccagcatcacatattttctctcttttttatttttcc  21087200                                                                         --------->ATHB12                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                   ------>ZmHOX2a(1)                                        ------->TEIL            ---------->ID1                          --------->ANAC58                     <-----------GT1                --------->ARR11(1)      --------->ARR14(2)--------->AHL20(2)       <---------YAB1     --------->ANAC58    <-----------RAV1(1) --------->TOE2(3)    --------->YAB1 -------DOF2    --------->ARR11(3)      <---------ARR14(2)--------->ATHB51     <--------P    <------- ---------->AGL15--------->CCA1(2)   ----------->GT1--------->ETT(1)    <---------AHL20(1)   <------- --->ID1        --------->ARR14(2)   <---------ANAC46     <---------AHL20(2)   <---------WOX13(1) -----GT1       <---------ARR14(2)   <---------ANAC55(2) --------->ICU4 --------->AHL20(1)   -------- ----GT1    ---------->DOF2  ------->TEIL<----------TaMYB80 <---------YAB1   <---------MYB46(3)   ttttttgttataaaaaaagatttggaccacgaatttgtaacgtatatactgttgtcggaattatttttccttattttattggttgattttcatattttat  21087300                   --------->YAB1        --------->ATHB12       <---------ATHB12       <---------YAB1--------->ANAC55(2)       --------->ICU4<---------ANAC55(2)      <---------TOE2(3)    <<<<<<<<<<GT-3b                         --------->YAB1 --AHL20(2)       <---------ATHB12                   <-----------GT1  --------->AHL20(2) --AHL20(1)     --------->WOX13(1)           ----------->GT1 ----------->GT1  --------->YAB1 ->AHL20(2)   <---------YAB1   <----------DOF2       --------->MYB52(1)    ----------->GT1       ----   ttgtttctaatgatttatcaatcacatatttttctttcaaaaatgttctgttaaataacgaaatcgcaaaaataaaacagtgatattatcaagaagacaa  21087400                               ------->MYC4                               <-------MYC2                               ------->MYC3                               <-------PIF5                               ------->MYC2                               ------->PIF5                               <-------MYC4                               <-------MYC3                              <---------ANAC55(2)                              <<<<<<<<<<AtMYC2                              <<<<<<<<<<ABI5                              =========================bZIP_bZIP                              --------->TGA1a                              --------->ANAC55(2)                              <---------TGA1a                              <--------ABF1                              --------->bZIP60(2)                              <---------O2                              --------->O2                              <<<<<<<<<<HY5                             ------>NtERF2                            <---------ALFIN1                            <------------OsbHLH66                       <-----------GT1                    --------->ARR14(2)                      <---------ICU4                      --------->ARR11(3)                      --------->ATHB51                    <---------GLK1(2)                       ---                  --------->AHL20(1)                --------->GLK1(1)                             <--                  --------->AHL20(2)                <---------GLK1(1)                            <---                  <---------AHL20(2)         --------->bZIP60(2)                                 ----                  <---------AHL20(1)         --------->TGA1a              --------->ARR11(3)    <----                 <---------ATHB12            --------->ANAC46             <---------ARR11(3)   ------      --------->ANAC58--------->YAB1         --------->O2 <---------ARR11(3)            <---------AHL20(2)      --------->ANAC58-------->HAHB4       ----------->RAV1(1)          ----------->ARR10    <-------   <---------ATHB12  --------->ICU4        <---------ALFIN1    <-----------GT1          --------->AHL20(2) ----->AtLEC2  --------->WOX13(1)       --------->PCF2    <---------ARR14(2)          --------->YAB1   tgcaaatcaagaaaaaccaattaattatcgccacgtgtctggctcccacatcagaattcagattttcacaagatgagatttttcacaaatataaatcacc  21087500                                                                           <-------GAMYB                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                           <------NtERF2                                                                          <---------MYB46(3)                                                                          <---------ERF1                                                                          ------>NtERF2                                                                          <---------RAP2.3(1)                                                                         <---------ANAC46                                                                         <---------RAP2.3(2)                                                                         <---------ANAC58                                                                         <---------DREB2C(2)                                                                         <---------RAP2.6(2)                                                                         <---------ANAC58--------->MYB52(2)                                                                         <---------RRTF1(2)                                                                         <---------DEAR3(1)                                                                         <---------RRTF1(3)                                                                        --------->RAP2.6(3)<---------ZAT6                                                            ------->GAMYB<---------RAP2.3(3)                                                           <---------MYB52(2)          <---------MYB52(1) ------>ANAC46                                            --------->At4g35610        <---------ANAC58 -------ALFIN1                                        <---------HSFB2a(2)<---------ATERF1(2) ------ZAT14              <----------DOF2             --------->HSFB2a(2)--------->ATERF1(2) ----->ZAT14           *TSS                       <---------ANAC58 <---------WRKY38(1)<----------DOF2 -----ALFIN1         <---------At4g35610          <---------ANAC58 <---------WRKY12  <---------ANAC46 --->ANAC46          <---------ZAT2           <----------DOF2     --------->WRKY18(1)<---------ANAC58 ----GT1         ------>ZmHOX2a(1)          <---------DAG2<---------At4g35610----------->HVH21   acacagcctcatcttcttcctctagctgcttttgctctctatctcactctttgcttctgcaactcacagtcaatggcggctgaaatggcgttagtgaaac  21087600                                                         --------->HSFC1(2)                         <                                                        --------->O2                                -                                                        <---------O2                               --                                                       <------NtERF2                               <-                                                      ------>NtERF2                              ----                                                     --------->DEAR3(1)                          <---                                                     ----------->HVH21                           ----                                                    --------->SPL7                              <----                                                  --------->LBD16                               -----                                                <---------LBD16                                ------                                             ------>ZmHOX2a(1)                 <-----------HVH21-----                   ---------->DOF2 --------->ANAC58 --------->DEAR3(2)      <---------GLK1(2)<-------                 --------->LBD16   --------->ANAC58------>NtERF2         --------->YAB1     ------>ZmHOX2a(1)        <---------ARR11(3)        --------->LBD16 ------>NtERF2 <---------ALFIN1   <---------At4g35610   ccatctccaagttctcttccccaaagctctcaaacccgagcaaattcctctccggccgacgtttctccaccgtgatcagaatgtcagcctcttcctcacc  21087700             <-----------HVH21             ------>NtERF2            ------->GAMYB            --------->ANAC58            --------->ANAC58            --------->DREB2C(2)            --------->DEAR3(1)            --------->DEAR4(1)         --------->AtMYB61         <---------ALFIN1        <---------MYB52(2)        <---------MYB111(2)        --------->MYB46(3)        <---------MYB55(2)       ------>MYB46(1)       -------->P       ------>MYB83     <---------MYB111(2)   ------>ZmHOX2a(1) ---------ATERF1(1)--------->HSFB2a(2)                                              --------->MYB52(1) ----->NtERF2--------->ABI4(1)                                                     --------->ANAC46 ------->DEAR3(1)  <---------HSFB2a(2)                                             ----------->HVH21 --------ALFIN1  <---------ZAT2                                                  --------->ANAC46 -->NtERF2 --------->MYB46(3)                                                   <---------REM1(2) ------ATERF1(1)------>NtERF2                                               --------->ARR14(2) ----->ABI4(1) <---------ALFIN1                                             <-----------ARR10     --- -----ALFIN1--------->RAP2.6(2)                                             <---------ARR14(2)    <-- ---->DEAR3(1) --------->DEAR3(1)                  <-------TEIL          <---------TOE1(2)       <--- --->DEAR4(2)<---------ATERF1(1)                  --------->GLK1(2)      <---------TOE2(2)       ==== ---->ANAC46--------->ANAC46               ---------->DOF2              --------->LBD16       <------ --ALFIN1------->GAMYB    ----------------->AGL1  --------->CCA1(2)    <---------TOE1(1)      -------   gcctcctccaaccaccgccacctcgaagtccaagaagggaacgaagaaagagattcaagagtcgcttcttactccgaggttctacacgacggacttcgag  21087800                                       --------->MYB52(1)                                    --------->TOE1(3)                               --------->ANAC58                        <---------ARR11(3)          <----------DOF2<------ZmHOX2a(2)         <---------GLK1(2)     --------->ANAC58 ------>ARR14(2)        --------->ARR11(3) -------ARR14(2)       --------->GLK1(1)     <---------At4g35610 ---ZmHOX2a(1)     --------->ANAC46 --------->TOE2(3)         --------->At4g35610 ===============================HOX2a_HOX2a  --------->At4g35610<----------DOF2 ---HSFB2a(2)     <---------LBD16 ------->TEIL            <---------ARR14(2) -->HSFB2a(2)   <---------REM1(2)<---------ARR11(3)       --------->ARR14(2)               --------->ANAC46   gaaatggaacagcttttcaacacggagatcaacaagaaccttaacgaagcagagttcgaggctctgcttcaagagttcaagaccgattacaaccagacac  21087900                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR11(3)                                                           --------->ARR14(3)                                                           <---------ARR14(3)                                                           --------->ARR14(2)                                                           <-----------ARR10                                                           <---------ARR14(2)                                                      ------>NtERF2                                                      <-----------HVH21                                                      ----------->RAV1(1) <---------ANAC58                                                     <---------ETT(1)     <---------ANAC46                                                     --------->ANAC46<---------ANAC58                             <---------At4g35610     ----------->HVH21<---------GLK1(1)                             --------->At4g35610--------->AtMYB61    <---------ANAC58               ----------->GT1               ======================HOX2a_HOX2a       <------ZmHOX2a(1)  <---------At4g35610=======================HOX2a_HOX2a--------->At4g35610 <---------ANAC58         --------->At4g35610<------ZmHOX2a(1)    <---------MYB52(1)        --------- <---------ANAC55(2)      --------->ZAT2   --------->ANAC58--------->AGP1 <---------ANAC58  <-------- <---------ANAC46        --------->GLK1(2) --------->ANAC58<---------ARR11(3)  <---------At4g35610 <---------ANAC58   ---------->DOF2      <---------AtLEC2  <---------GLK1(2) <---------WRKY18(1)   <-   atttcgtgaggaacaaggagtttaaagaagctgcagacaaattgcaaggacctctccgacagatcttcgttgagttccttgagcggtcttgtactgctga  21088000  Previous    Next  AGI:  At3g56930.1    Description:  zinc finger (DHHC type) family protein. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G05070.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79042.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) Range:  from: 21084474    to: 21087293    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g56940.1    Description:  AT103 (DICARBOXYLATE DIIRON 1). Identical to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (CRD1) [Arabidopsis Thaliana] (GB:Q9M591;GB:O04051;GB:Q38892;GB:Q8GUS3;GB:Q9M1K4); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96463.1); similar to putative desaturase-like protein [Trifolium repens] (GB:CAK54360.1); similar to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (GB:Q945B7); contains InterPro domain Rubrerythrin; (InterPro:IPR003251); contains InterPro domain Magnesium-protoporp Range:  from: 21087523    to: 21089422    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version