Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------LBD16                                   <---------ANAC46                                    ---------->DOF2                                   ----------->RAV1(2)                           >>>>>>>>>TBF1                             <---------ARR11(3)                               >>>>>>>>>TBF1                           --------->ANAC58                               <------ZmHOX2a(1) --->DAG2                  --------->ANAC58                           <------NtERF2  <xxxxxxxxxxxxxxx --->DOF2             ----------->HVH21        ---------->DOF2       ------>NtERF2  >>>>>>>>>TBF1   gcgaaatgtcaagactagaaacgagtgacaagacattacctggagaagcgaaagacggagattgaagaaggcgcgaggaagaagaagaagaaagagaaga  21081200                  <---------At4g35610                                                             ---               ---------->DOF2          --------------->AGL15                                 <------   ------------------------>ANAC81      <---------------AGL15      <----------DOF2       <----------DOF2 xxxxxxxxsmallRNA(se3)                <<<<<<<<<TBF1  --------->GLK1(2)                   <---------DAG2   gagagaagggagagaattgaagcagagaagagccatcttcttcttctaatggaagaatttgtcttcagactttcatttgatagtggataagctttttctc  21081300                                                    --------->LBD16                                   *TSS             ----------->GT1                                   <---------WOX13(1)   --------->AHL20(2)                             <---------ARR14(2)   <---------LBD16                                <---                             --------->ARR14(2) <---------ARR14(2)                  --------->DEAR3(2)                        --------->MYB52(1)      --------->ARR14(2)                 ------->TEIL  <---                       <---------SPL7        ------------>CBF                      --------->MYB52(1)                       ------->GAMYB<XXXXXXXXXXXXXXXXXXXXMIR170         --------->ICU4           ====                      <---------MYB52(2)  --------->LBD16   <---------AHL20(2)    --------->MYB52(1) --->ZmHOX2a(1)       --------->MYB46(3)<---------LBD16 <---------AHL20(2) <---------YAB1   <-------- -----GT1           --------->MYB52(1)  ------>ZmHOX2a(2)   --------->AHL20(2)  <---------MYB52(2) --   cttctctctgtctgtgtcttcttaacgaacggattggattgatccggctcaatccggtttaattaaatacagaaattatcaaacgaaccggcttcttttt  21081400                                                           <-------MYC2                                                           ------->MYC4                                                           <-------MYC4                                                           ------->MYC2                                                           <-------PIF5                                                           ------->PIF5                                                           <-------MYC3                                                          --------->TGA1a                                                          >>>>>>>>>>ABI5                                        <---------HSFB2a(2)-------->ABF1                                  <----------DOF2         <---------TGA1a                                  <---------DAG2          >>>>>>>>>>HY5                                  <---------------AGL15   --------->ANAC55(2)                                  --------------->AGL15   <---------ANAC55(2)                                  ==================================bZIP_DOF                                 <-----------------AGL3   <---------O2                             <------MYB46(1)              --------->O2                            <---------MYB46(3)            >>>>>>>>>>AtMYC2           <------NtERF2                            <---------------AtSPL8   ----------->HVH21              --------->LBD16                            --------------->AtSPL8 --------->At4g35610             <---------ANAC46              ----------->GT1<------MYB83          <---------At4g35610             <---------ANAC58 <---------GLK1(2)         --------->ALFIN1        <-------GAMYB                   <---------ANAC58 --------------AG        --------->ALFIN1      <-----------HVH21                  <---------LBD16 --------------AGL1    --------->LBD16  --------->HSFB2a(2)------->MYC3 --------->ALFIN1 ==================================================MADS_MADS--------->ALFIN1   <---------WOX13(1) --DOF2 <--------P   <---------LBD16 <---------YAB1=================MYC_MYB <---------YAB1 ---->ZmHOX2a(1)>>>>>>>>>GATA-1  ----------------->AGL3   <---------bZIP60(2)--------->ATHB12   cctgattcgggttgaatagataaaccggagtgggtactttttatagaactgtgagttgacacgtggctgtcccagtgtgtgattggcgggagaaaggcta  21081500                             <------MYB83                             <------MYB46(1)                            <---------AtMYB61                            --------->MYB55(2)                            <---------MYB46(3)                            --------->MYB111(2)                            --------->MYB46(2)                            <---------DEAR3(1)                            --------->MYB111(1)                           <--------P                          <---------ANAC58                          <---------ANAC58                          <-------GAMYB                         --------->MYB55(2)                         --------->MYB52(2)                         <------MYB46(1)                  <------ZmHOX2a(1)                         --------->ATHB12              <------NtERF2                         <------MYB83                  --------->ATERF1(1)                         <---------MYB46(3)           --------->LBD16            --------->LBD16<---------MYB55(1)        <---------ANAC46           <---------HSFB2a(2)                       <---------DEAR3(1)           --------->HSFB2a(2)                       <---------ANAC58      <---------MYB46(3)<---------AtMYB61            <---------ANAC58  <---------TOE1(3)  <-----------RAV1(1)            <---------LBD16                          <-------  <---------TOE2(3)--------->YAB1             ------------>CBF           ---------->DOF2 ---------->DOF2   agttaaggttgttccagagaatgatgttggttggtgttttgagcaacttccaatggcggaggacaaatctatggagaaagggagagagagagaaagaaac  21081600                                                            --------->ATERF1(1)                                                            <------NtERF2                                                            <---------SPL7                                                           <---------ATERF1(1)                                                           ------>NtERF2                                                           <---------DEAR3(2)                                                           <---------DEAR4(2)                                                           <---------RAP2.3(1)                                                          <---------DEAR3(1)                                                          <---------RAP2.3(2)                             --------->ANAC58             --------->ATERF1(2)                             --------->ANAC58             <---------ATERF1(2)                           *TSS                           --------->ANAC46                        --------->At4g35610               <---------RAP2.3(3)                   --------->YAB1                        --------->At4g35610  <---------TOE2(2)                --------->TOE2(3)                        <---------LBD16      <---------TOE1(2)                --------->TOE1(3)                --------->ANAC46            <---------LBD16                --------->YAB1 ---------->DOF2  --------->LBD16         --------->GLK1(1)               ----------------->AGL3       <---------ARR14(2)          <---------GLK1(1) <---------ANAC58  --------->WOX13(1)  --------->YAB1        --------->ARR14(2) --------->ANAC58           <---------ANAC58 ---ID1        ----------------->AGL2       --------->GLK1(2)  --------->ANAC58<---------DEAR3(2)----   aaatctatcaaacagaaaccataatcagaagacgaaaggagaacaaaatccgcacaatcggcggcacgatttggatatcgccggtttcattcgcttggct  21081700                                --------->TGA1a<---------ARR14(2)                                <---------ANAC58                                <---------ANAC58                                <---------O2 --------->LBD16                                <---------bZIP60(2)                                ===========================================bZIP_DOF                                <---------TGA1a<---------GLK1(2)                                <---------ANAC55(2)                                <---------ANAC46--------->GLK1(2)                               -----                       --------->At4g35610  <------NtERF2                                      ------                 --------->CCA1(2)         <---------LBD16                                    -------                --------->ARR14(2)         ------>NtERF2                                      <------       <------ZmHOX2a(1)      <------ZmHOX2a(1)--------->ARR14(2)                             -------     <---------TOE2(3) <---------At4g35610 --------->LBD16----------->GT1<-----------GT1     <------- ----->At5g28300<---------ARR14(2)        --------->DEAR3(1)    ---------->DOF2        <-------TEIL   gtgaattgaggaaacttggatatggagctgtaggacgtgtctagccgcggattctgagactggaaacaaagcgaataacatttctgagtttcattccccg  21081800                                       --------->ARR14(2)                                       <---------ARR14(2)                                       --------->GLK1(2)  >>>>>>>>>E2Fd                                       --------->ARR11(3)------>NtERF2                                  ---------->DOF2       --------->ANAC46       <---------MYB52(1)     <----------ID1            --------->ANAC58 ---->LBD16           <---------ARR14(2)           --------->MYB59 --->LBD16            --------->ARR11(3)  --------->WOX13(1)                             <---------At4g35610 -->LBD16             <---------ARR11(3) ------>ZmHOX2a(2)>>>>>>>>>E2Fc             ----------->HVH21 ---HSFB2a(2)         --------->ARR14(2)<------ZmHOX2a(2)<------NtERF2          --------->ATHB12 -->HSFB2a(2)         --------->GLK1(2)<---------ARR11(3)--------->LBD16       <---------YAB1 --LBD16             <---------GLK1(2)<------ZmHOX2a(1) --------->ANAC58     <---------At4g35610<----   aagaaaaacgttatgtcttctcagaatcttgaacgacaaaggatctatcaagtttggcccgccaaaaatgtaagacttctgatgatttgacagcaaattt  21081900                                                                ----------->GT1                                                               <---------TOE2(3)    --------->ANAC58                                                         <---------YAB1             --------->ANAC58                                                       --------->YAB1          <---------GLK1(2)                                    <-----------GT1    <---------ICU4          <---------ARR11(3)                        <---------YAB1               --------->GLK1(2)   --------->TOE2(3)       <-----------GT1 --------->AHL20(2)           --------->YAB1    --------->RVE1(1) -------GT1  <----------DOF2  <------ZmHOX2a(1) --------->CCA1(2)<------ZmHOX2a(1) <---------LBD16   acatttttaaaaccgcattgtggatttttataggattttaactttggaagataagaatcatgaatgaggaaaatacctcaagatgctcggaattgatttt  21082000                                                             <---------------AGL15                                                          --------->GLK1(2)                                                          --------->ARR14(1)                                                         <---------GLK1(2)                                                         <---------ARR14(2)                                                         --------->ARR11(3)              <---------ANAC46                                                         --------->ARR14(2)        <---------RVE1(1)                                                       <---------TOE1(3)          <---------ARR11(3)                                                       <---------YAB1             --------->ARR11(3)                              ---------->DOF2          <---------TOE2(3)          <---------GLK1(2)               <---------At4g35610                <----------DOF2               <---------TOE2(3)   gttactaatatatgctctgcttctctctgtgctaaagtttgaagaacatgagcttttaagattctctcaatggaaatagtctaagatttttatgtgtatt  21082100  Previous    Next  AGI:  At3g56910.1    Description:  PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5). Identical to Plastid-specific 50S ribosomal protein 5, chloroplast precursor (PSRP5) [Arabidopsis Thaliana] (GB:Q9LER7;GB:Q94B31); contains domain PD031914 (PD031914) Range:  from: 21080390    to: 21081335    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56920.1    Description:  zinc finger (DHHC type) family protein. similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT2G40990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79043.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18287.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) Range:  from: 21081627    to: 21083681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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