Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------TOE2(3)                                                                     <----------DOF2                                                                   <---------ANAC46                                                                   <------MYB83                           --------->ANAC58                        <------MYB46(1)              <---------ZAT6             --------->GLK1(2)      <---------MYB52(1)     <---------AtLEC2      --------->ANAC58             ----------->HVH21<---------TOE1(3)   --------   aattcttccatggctagagttcaagctgtaagcactgagagagactctgttcttggactcgacagcgttgggtttaaggctcaaaactgaaacacaaaag  21080900                                                         ----------->RAV1(2)                                                       <-----------GT1                                                  --------->TOE2(3)                                                  --------->TOE1(3)                                 -                                                <---------TOE1(3)                                <---                                            <----------DOF2                                     -----                                           ------>ZmHOX2a(2)    --------->ZAT18                 -----           --------->ANAC46              <---------ARR11(3)     <---------ZAT18                ------           --------->ANAC58              --------->ARR11(3) --------->MYB52(1)      <---------DAG2--- -->DOF2   --------->ANAC58   --------->AHL20(2)<---------TOE2(3)                   <----------DOF2 -   attagagcattacaagtaaaccaagtgttcgattaaatgcttcgatctttaagcttaaaacctgactgccctaaaacaaaacttcacttttttgggacaa  21081000 -------->ANAC58                                                               --------->ANAC46 ------ATHB12                  <------MYB83                       --------->LBD16             ------- ---->ANAC58                  --------->MYB59                     --------->ANAC46        --------->ANAC58 ---->ANAC58         --------->At4g35610                         --------->HSFB2a(2)      --------->ANAC58 --->WOX13(1)      <------ZmHOX2a(1)                             <---------HSFB2a(2) --------->MYB52(1) ------>YAB1    <-----------RAV1(2)                             <---------LBD16--------->ANAC58 -------->ANAC58<---------LBD16<------MYB46(1)                <-----------GT1  --------->ANAC58------   tcaagaaattgaactagcccaggagcttcaatttggttccatgggtctctattgtttttttttttttcccgatacaattccacgacaaaacgaagcaaaa  21081100                                    <---------LBD16                                   <---------ANAC46                                    ---------->DOF2                                   ----------->RAV1(2)                           >>>>>>>>>TBF1                             <---------ARR11(3)                               >>>>>>>>>TBF1                           --------->ANAC58                               <------ZmHOX2a(1) --->DOF2                  --------->ANAC58                           <------NtERF2  <xxxxxxxxxxxxxxx --->DAG2             ----------->HVH21        ---------->DOF2       ------>NtERF2  >>>>>>>>>TBF1   gcgaaatgtcaagactagaaacgagtgacaagacattacctggagaagcgaaagacggagattgaagaaggcgcgaggaagaagaagaagaaagagaaga  21081200                  <---------At4g35610                                                             ---               ---------->DOF2          --------------->AGL15                                 <------   ------------------------>ANAC81      <---------------AGL15      <----------DOF2       <---------DAG2 xxxxxxxxsmallRNA(se3)                <<<<<<<<<TBF1  --------->GLK1(2)                   <----------DOF2   gagagaagggagagaattgaagcagagaagagccatcttcttcttctaatggaagaatttgtcttcagactttcatttgatagtggataagctttttctc  21081300                                                    --------->LBD16                                   <---------WOX13(1)   --------->AHL20(2)                                   *TSS             ----------->GT1                             <---------ARR14(2)   <---------LBD16                                <---                             --------->ARR14(2) <---------ARR14(2)                  --------->DEAR3(2)                        --------->MYB52(1)      --------->ARR14(2)                 ------->TEIL  <---                       <---------SPL7        ------------>CBF                      --------->MYB52(1)                       ------->GAMYB<XXXXXXXXXXXXXXXXXXXXMIR170         --------->ICU4           ====                      <---------MYB52(2)  --------->LBD16   <---------AHL20(2)    --------->MYB52(1) --->ZmHOX2a(1)       --------->MYB46(3)------>ZmHOX2a(2)   --------->AHL20(2)  <---------MYB52(2) -- -----GT1           --------->MYB52(1)  <---------LBD16 <---------AHL20(2) <---------YAB1   <--------   cttctctctgtctgtgtcttcttaacgaacggattggattgatccggctcaatccggtttaattaaatacagaaattatcaaacgaaccggcttcttttt  21081400                                                           ------->PIF5                                                           <-------MYC4                                                           <-------MYC3                                                           ------->MYC3                                                           <-------PIF5                                                           -------->ABF1                                                           ------->MYC4                                                          >>>>>>>>>>ABI5                                                          --------->TGA1a                                        <---------HSFB2a(2)------->MYC2                                  <---------------AGL15   <---------TGA1a                                  <---------DAG2          >>>>>>>>>>AtMYC2                                  --------------->AGL15   --------->ANAC55(2)                                  <----------DOF2         <---------ANAC55(2)                                  ==================================bZIP_DOF                                 ----------------->AGL3   <---------bZIP60(2)                             <------MYB46(1)              --------->O2                            <---------------AtSPL8        >>>>>>>>>>HY5              <------NtERF2                            --------------->AtSPL8   ----------->HVH21              --------->LBD16                            <---------MYB46(3)     <-------GAMYB                   <---------ANAC58              ----------->GT1<------MYB83          =================MYC_MYB        <---------ANAC46 <---------GLK1(2)         --------->ALFIN1        <---------At4g35610             <---------ANAC58 --------------AG        --------->ALFIN1      <-----------HVH21                  <---------LBD16 --------------AGL1    --------->LBD16  --------->HSFB2a(2)<-------MYC2        <---------WOX13(1) ==================================================MADS_MADS--------->ALFIN1 --------->ATHB12 ---->ZmHOX2a(1)>>>>>>>>>GATA-1  <-----------------AGL3   <---------O2      <---------YAB1 --DOF2 <--------P   <---------LBD16 <---------YAB1--------->At4g35610  --------->ALFIN1   cctgattcgggttgaatagataaaccggagtgggtactttttatagaactgtgagttgacacgtggctgtcccagtgtgtgattggcgggagaaaggcta  21081500                             <------MYB46(1)                             <------MYB83                            --------->MYB46(2)                            --------->MYB111(2)                            <---------AtMYB61                            --------->MYB55(2)                            <---------MYB46(3)                            <---------DEAR3(1)                            --------->MYB111(1)                           <---------MYB55(1)                          <---------ANAC58                          <-------GAMYB                          <---------ANAC58                         --------->MYB52(2)                         --------->ATHB12                         --------->MYB55(2)               <------ZmHOX2a(1)                         <---------MYB46(3)            <------NtERF2                         <------MYB46(1)               --------->ATERF1(1)                         <------MYB83                 --------->LBD16            --------->LBD16<--------P                <---------ANAC58           <---------HSFB2a(2)                       <---------ANAC46           --------->HSFB2a(2)                       <---------ANAC58      <---------MYB46(3)<---------AtMYB61            <---------DEAR3(1)  <---------TOE2(3)  <-----------RAV1(1)            <---------LBD16                          <-------  <---------TOE1(3)--------->YAB1             ------------>CBF           ---------->DOF2 ---------->DOF2   agttaaggttgttccagagaatgatgttggttggtgttttgagcaacttccaatggcggaggacaaatctatggagaaagggagagagagagaaagaaac  21081600                                                            --------->ATERF1(1)                                                            <---------SPL7                                                            <------NtERF2                                                           <---------ATERF1(1)                                                           <---------RAP2.3(1)                                                           <---------DEAR3(2)                                                           ------>NtERF2                                                           <---------DEAR4(2)                                                          --------->ANAC46                                                          <---------RAP2.3(3)                             --------->ANAC58             <---------DEAR3(1)                             --------->ANAC58             <---------ATERF1(2)                           *TSS                           --------->ATERF1(2)                        --------->At4g35610               <---------RAP2.3(2)                   --------->YAB1                        --------->At4g35610  <---------TOE1(2)                --------->TOE1(3)                        <---------LBD16      <---------TOE2(2)                --------->TOE2(3)                --------->ANAC46            <---------LBD16                --------->YAB1 ---------->DOF2  --------->LBD16         --------->GLK1(1)               ----------------->AGL3       <---------ARR14(2)          <---------GLK1(1) <---------ANAC58  --------->WOX13(1)  --------->YAB1        --------->ARR14(2) --------->ANAC58           <---------ANAC58 ---ID1        ----------------->AGL2       --------->GLK1(2)  --------->ANAC58<---------DEAR3(2)----   aaatctatcaaacagaaaccataatcagaagacgaaaggagaacaaaatccgcacaatcggcggcacgatttggatatcgccggtttcattcgcttggct  21081700                                <---------TGA1a<---------ARR14(2)                                <---------bZIP60(2)                                <---------ANAC58                                <---------O2 --------->LBD16                                <---------ANAC55(2)                                <---------ANAC58                                --------->TGA1a--------->ARR14(2)                                ===========================================bZIP_DOF                                <---------ANAC46--------->GLK1(2)                               -----                       --------->At4g35610  <------NtERF2                                      ------                 --------->CCA1(2)         --------->LBD16                                    <------                <---------ARR14(2)         ------>NtERF2                                      -------       <------ZmHOX2a(1)      <------ZmHOX2a(1)<---------GLK1(2)                              -------     <---------TOE2(3) <---------At4g35610 <---------LBD16----------->GT1<-----------GT1     <------- ----->At5g28300--------->ARR14(2)        --------->DEAR3(1)    ---------->DOF2        <-------TEIL   gtgaattgaggaaacttggatatggagctgtaggacgtgtctagccgcggattctgagactggaaacaaagcgaataacatttctgagtttcattccccg  21081800  Previous    Next  AGI:  At3g56910.1    Description:  PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5). Identical to Plastid-specific 50S ribosomal protein 5, chloroplast precursor (PSRP5) [Arabidopsis Thaliana] (GB:Q9LER7;GB:Q94B31); contains domain PD031914 (PD031914) Range:  from: 21080390    to: 21081335    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56920.1    Description:  zinc finger (DHHC type) family protein. similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT2G40990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79043.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18287.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) Range:  from: 21081627    to: 21083681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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