Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ------->GAMYB                                                            --------->At4g35610                                                        --------->ANAC58           <------ZmHOX2a(1)-                                                        --------->ANAC58       --------->TOE1(2)   --                                                        --------->ANAC46      --------->MYB46(3)   -- --------SPL7                                       --------->ANAC58       <------ZmHOX2a(1)       <- ------------AtSPL8                                 --------->ANAC58     <---------TOE2(2)      ----- ------------AtSPL3       --------->ANAC46      <-----------HVH21        <---------TOE1(2)    <------   tagtacggtttacatgtatacttcatacacaaaacaatatcgcctcttgcagtcactccagcaactgaaaactcgcaggaaccaaggacttcattctccg  21074300      --------->ETT(2)    --------->REM1(2)    --------->ZAT14                                                                  --------->TOE2(3)   --------->ALFIN1                                                  --------->ARR14(2) <---------ANAC46                                       --------->YAB1           --------->DEAR3(1) -------->DAG2                                <<<<<<<ZML2          ------->GAMYB --------->AtMYB61 -------->DOF2                             <---------HSFB2a(2)    --------->ANAC58   --------->TOE1(3) ------->ZAT14                             --------->HSFC1(1)     --------->ANAC46   <-----------TGA1 --------ZAT14            ------>ZmHOX2a(1)--------->HSFB2a(2)    --------->ANAC58 ------>MYB46(1) ---->LBD16     <---------WRKY18(1)      ------>ZmHOX2a(1)      --------->MYB52(1) ------>MYB83 ---LBD16      ----------->HVH21     <---------ARR11(3) --------->ANAC46        --------->MYB46(3)   gtaaagtgtagacatacttgacccattcctgtttctcaacatcctctagaacccacaaacacaactcaacggaacgtcttccaccaacgtcaacatagtt  21074400                                     --------->TOE2(3)                                     --------->YAB1                                   ------>MYB46(1)                              >>>>>>>>>>WRKY26                              >>>>>>>>>>WRKY6                              <---------WRKY18(1)                              >>>>>>>>>>WRKY38                 <---------ARR11(3)                              >>>>>>>>>>WRKY43                 --------->ARR11(3)                              >>>>>>>>>>WRKY11                --------->YAB1                  <-----------GT1  ------>MYB83        ------>ZmHOX2a(1)                 <-----------GT1 <---------MYB59   --------->ARR14(2)          <---------At4g35610--------->WRKY38(1)   <---------ZAT18          --------->At4g35610--------->WRKY12  <---------STY1(1)                                    -    <-----------HVH21        --------->WRKY45  --------->STY1(1)                               <-----   gcacttagtcacagctaatttacccatatagttgaccaaacttaatccactagggtcctctatatgatcatctaagcattctgactcaataaacttgaac  21074500                                                       --------->HSFC1(1)                                                       >>>>>>>ZML2                           ---------->DOF2             --------->HSFB2a(2)                          --------->YAB1               <---------HSFB2a(2)                       --------->WOX13(1)           <---------ARR11(3)                    --------->ANAC58       --------->ANAC46                --------->ANAC58          --------->LBD16                                           <                --------->ANAC58          ------>ZmHOX2a(1)  --------->ANAC58                       -           --------->TOE2(3)              <---------HSFB2a(2)--------->ANAC55(2)       <---------ARR14(2)     --------->At4g35610 <<<<<<<<<ARR2<---------ARR14(2)     ----------->GT1           --------->ARR14(2)     <---------At4g35610 <---------ATHB12 --------->HSFB2a(2)--------->ANAC58         --------->GLK1(1) ----->ZmHOX2a(1)   --------->ANAC58  --------->ARR14(2)     <---------ANAC55(2)      <---------CCA1(2) ----GLK1(1)  ---------->DOF2     >>>>>>>>>TAC1     --------->ARR11(3)                <---------GLK1(1)   tcctcagagctaacatcaaagcaaacaatcaaagacagtgtttcctcgaaacaagttctagataagtaatacaaaaccccattgatgcatatcccttgag  21074600                                                                                 <-----------GT1                                                                                 ---------->ID1                                                                         ------>ZmHOX2a(1)                                                                        --------->TOE1(3)                                                                        --------->TOE2(3)                                                                       ------>ZmHOX2a(2)                                                                       ====================HOX2a_HOX2a                                                                      <------ZmHOX2a(2)                                                                      =====================HOX2a_HOX2a                                                                     --------->AGP1 ------>ZmHOX2a(1)                                                                     --------->ARR14(2)                                                                     <---------GLK1(2)<----------DOF2                                                              --------->ZAT18   <-----------GT1                                                     <---------ALFIN1<---------ARR14(2)                                                   ------>ZmHOX2a(1) <---------ARR11(3)                                                   ===========================HOX2a_HOX2a                                                   ==========================HOX2a_HOX2a       <---------------------WRI1           =================================HOX2a_HOX2a  ----------->HVH21            <---------ARR11(3) --------->ANAC46   --------->ARR11(3) ----------DOF2      <------ZmHOX2a(1)      ==================================HOX2a_HOX2a     <------ ----->ZmHOX2a(1)---------->DOF2            ------>ZmHOX2a(1) <---------ZAT14 <---------ICU4<--------   tcctttgacagcgataatacaaaggaccatcaatatcgtttctatcctttctcctccacttgagttcaccagatccttaatttttcctctttccattggt  21074700                        --------->LBD16                      <---------LBD16               <---------MYB46(3)                                                           <--------              <---------WOX13(1)                                                      --------->ZAT14         --------->ANAC55(2)                                                          <---------ZAT14         <---------ANAC58                                                            <----------DOF2         <---------ANAC46  ---------->DOF2                                        <---------ANAC58         <---------ANAC55(2)                                                      <---------ANAC58         <---------ANAC58<------NtERF2                                            <---------ANAC46       --------->ALFIN1--------->DEAR3(1)                                        <------NtERF2    <------NtERF2    ------>NtERF2                        ---------->DOF2      --------->ALFIN1   --------->LBD16 <---------LBD16                   ----------->RAV1(1)     --------->ANAC55(2)  --------->DEAR3(1) --------->LBD16                 ------>NtERF2           <---------ANAC55(2)    - <---------LBD16--------->KAN4(2)           <------ZmHOX2a(1)                <---------ANAC58      <- ---MYB46(3) <------------CBF             <---------TOE2(3)--------->DAG2    <---------ANAC58  <----- -MYB52(1)  --------->ATHB12  --------->At4g35610   <----------ID1   <---------ARR14(2)   -----------   ttcgccggagtgcgtgattgttccgccggagaagcagagggttttaggaatacgacgacaaaaagagagagaatacagtacgtggcgcttcagtgaccgc  21074800                                       --------->ARR14(2)                                       --------->GLK1(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       <---------ARR11(1)                    ------------>CBF -At5g28300                       <---------HSFB2a(2)                      --------->ZAT18 ----->ZmHOX2a(1)         --------->YAB1                                   <---------ZAT18      <---- --------ALFIN1          <---------ATHB12                         --------->YAB1                ----- ----At4g35610       ------------>CBF  <---------ARR14(2)      --------->TOE2(3) <---------ATHB12 >HVH21             --------->TOE2(3) <---------CCA1(2)        <----------DOF2   --------->AHL20(2)   tcctccctccaaactaaaacaacttcaatcgtcgttctgcaaatcttgatgttattaggcctatactttaatattagggcccaataaatgtttgctaaaa  21074900                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                                 --------->YAB1                                                                          <-----------GT1                                                                       <---------AHL20(2)          <---------ANAC58                                          --------->AHL20(1)          <---------ANAC58                                          <---------AHL20(1)     <---------ANAC58                   <---------YAB1           --------->YAB1  --------->AHL20(2)     <---------ANAC58        --------->YAB1                      --------->AHL20(2)                -- -----ARR11(3)              <---------YAB1              <---------At4g35610  <---------YAB1       <-- ---->ARR11(3)------------>CBF  <-----------GT1    <----------DOF2<---------TOE2(3)          <-------   tcttagggcctggcttcacaattcaacattctaataacctttcttattagtttctttcatctcgcattaatatttttttctaattaaaatgaagactttt  21075000      <-----------GT1                           <---------YAB1                                      < <----------DOF2                                <---------TOE2(3)                                   - -------->ID1                           <------ZmHOX2a(1)         <---------AHL20(2)                - ---------GT1                   --------->TOE2(3)          ------->MYC3                             - ---DOF2    --------->HSFB2a(2)--------->At4g35610         <-------MYC3                             <   tttctttttttcttctcaaactatattggaattagcttaataggaaacttaagataaaacatgtgtattatatcaaacaaacttatacaatagagggaac  21075100                                                                                           --------->YAB1               <---------TOE2(3)                                                         --------->ANAC46               <---------YAB1                                       --------->ZAT6       --------->ANAC58 ---------ARR14(3)                                            <---------AHL20(2)         --------->ANAC58 -------->ARR11(3)                       ---------->DOF2      --------->AHL20(2)  <---------------AtSPL8 -------->ARR14(3)                <---------TOE2(3)          --------->AHL20(2)<---------YAB1 -------->GLK1(2)               ---------->DOF2      --------->TOE2(3)       --------->ANAC55(2) ---------ARR11(3)         <---------ATHB12   --------->GLK1(2)--------->YAB1<---------ANAC55(2)   aaaatcttgttttggttaagaatgaacaaatgaataaaggaatgaaagaatccaacgtcaaaaattaataacacaaatcacatgatagtacaagcatgag  21075200  Previous    Next  AGI:  At3g56890.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G57580.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 21073969    to: 21074696    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56891.1    Description:  metal ion binding. similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT2G18196.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70235.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) Range:  from: 21075178    to: 21075901    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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