Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <------NtERF2                                               --------->ATERF1(1)                <---------MYB52(1)                                              <---------SPL7                   <-------TEIL                                              <---------ATERF1(1)           <---------ZAT2                                              ------>NtERF2        <---------DEAR3(2)                                             <---------ANAC46      <---------HSFC1(2)                                           --------->LBD16         --------->HSFC1(2)                                <---------At4g35610                --------->HSFB2a(1)                             --------->At4g35610  --------->At4g35610--------->ARR14(2)                          <---------ZAT2   <---------ATERF1(1)     <---------MYB46(3) <---------GLK1(2)                          --------->ZAT2   ------>NtERF2          <---------DEAR3(1)----------->ARR10                     <-----------GT1    ------>ZmHOX2a(1)      ----------->HVH21 --------->TOE2(3)                 --------->AHL20(2)  ------>ZmHOX2a(1)   <---------GLK1(2)  --------->ZAT2                 <---------AHL20(2) <---------ALFIN1    <---------At4g35610 --------->At4g35610          <---------YAB1 --------->ANAC46<---------LBD16--------->At4g35610 <---------At4g35610          ------>ZmHOX2a(1)  <---------At4g35610  <---------At4g35610<---------ARR14(2)         -----   tccttgattatcctgatttttaattacaagctgctgctcctcctccggcgtctgcttcagcttctgcgacggttcttcagcttcgttagattcttctcct  21063100                                                      <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   <-----------GT1                ---------->ID1                       <---------TOE1(2)           <---------At4g35610            <----------DOF2                 <---------TOE2(3)                    --------->At4g35610            --------------------->WRI1--------->ARR11(3)                       --------->DAG2    ----   <----------DOF2                    <---------ARR11(3)     <----------DOF2  ---------->DOF2<------- ->ZmHOX2a(1)  XXXXXXXXXXXXXXXXXXXX>MIR4239 <---------TOE1(3)--------------------->WRI1 <-----------GT1   tcgagctttctcttctttgtcattttcgaattctaatggagattttagggtttcgaatgttttctttggtttcttctccaaaaagctgattttcccctcc  21063200                        ----------->GT1                        <------MYB46(1)                       <---------AtMYB61                 <-----------RAV1(1)                *TSS  <---------ANAC46               <----------DOF2             ------>NtERF2            --------->RAP2.3(3)            --------->RAP2.3(2)            --------->RRTF1(3)            --------->RRTF1(2)            --------->DEAR3(1)           <------NtERF2<------MYB83                                                      --------->AHL20(2)           --------->RAP2.3(1)                                                            <---------AHL20(2)           --------->ORA47(2)                                                             <----------          <---------RAP2.3(1)         --------->TOE2(3)                                 <-----------TBP     ---------->DOF2<---------MYB46(3)--------->TOE1(3)                              <---------AHL20(2)     --------->YAB1--------->ALFIN1 -------->P                             --------->ANAC46 -->ZmHOX2a(1)<---------MYB52(1)    ------->TEIL                        <---------At5g28300 --------- --ALFIN1--------->ANAC46      --------->YAB1 <----------DOF2  <-----------GT1      --------->AHL20(2)   ttatctataatgcgccgctatgtgggtggtatatcatcaacctcaagtctttgctaagtggatttttacacatttacccctaaccattttatatatataa  21063300           <------------CBF          <---------ICU4          --------->ATHB12                                                            ------>NtERF2         --------->ICU4                                                               --------->LBD16         <---------YAB1                                                              --------->ANAC58       <---------ICU4                                                                --------->ANAC46       --------->ATHB12                                                              --------->ANAC58       --------->YAB1                                                        ---------->DOF2      --------->ICU4                                                      --------->TOE2(3)         -      <---------YAB1                                                      --------->TOE1(3)       <--      <---------ATHB12                                                 --------->MYB52(1)  ------->MYC3    --------->YAB1<----------DOF2                                   --------->YAB1  <---------LBD16-- -TBP<---------TOE2(3)     ---------->DOF2 ---------->DOF2      ---------->DOF2XXXXXXXXXXXXXXXXXXX>MIR3434* -->TBP-------->HAHB4 <---------TOE2(3) --------->ANAC46  ----------->GT1<----------ID1    <-------MYC3   gcccattaatgattattgggctttaagtttaaagacccatttacgaaaagatgcttaagtaagaaaaaaagaataacgtcaaagttcccgccatgtgttt  21063400            <<<<<<<<<AtERF-3            ------>NtERF2            <<<<<<<<<AtERF-4                        *TSS           <---------RAP2.3(3)                      ---------->DOF2           <---------RAP2.6(2)                     ------->GAMYB           <---------DEAR3(1)                     --------->MYB46(3)           <---------RAP2.3(2)                   --------->ANAC58          --------->RAP2.6(3)                    --------->ANAC58         --------->MYB52(1)                 --------->ANAC58         ------>NtERF2        ----------->HVH21                   --------->ANAC58  --------->ARR14(2)     --------->At4g35610 -------->LBD16                          <---------------------WRI1 --------->DEAR3(1)        <------ -------LBD16<---------At4g35610     --------->At4g35610   --------->DAG2            <---------At4g35610 ------->ANAC46                      <---------At4g35610 ---------->DOF2        ---------->DOF2   cccgcgagacttgacggctcataagattagtcagaactcagaagacaagacaaccaaagaaaaggtttcgcctcccttcttacaaagagctgcaattttc  21063500                                                                     --------->LBD16                                                                    --------->HSFB2a(2)                                                                    <---------HSFB2a(2)                                                                  =================================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                                 <---------ARR11(3)                                                                 <---------ARR14(2)          <-------                                                                 --------->ARR14(2)          <-------                                                                 --------->AGP1              --------                                                          ------->TEIL                       --------                                                        <---------ZAT18                     <------ZmHOX2a(1)                                 <---------AHL20(2)     --------->ZAT14                  <-----------RAV1(2) -----GT1    <<<<<<<<<TBF1      --------->AHL20(2)<----------DOF2--------->ARR11(3)      <---------LBD16   agtctcttggtcttcttcttcgtcttgttttcaaattaatgtctctctgtctctttagtgaaccctagatccagaaattagagtttggagcccaggattc  21063600  <-------TEIL --GLK1(2)                                                                  <----------DOF2 --ARR14(2)                                  ----------->GT1      <-------TEIL                <------ ->ARR14(2)                                 <---------TOE1(3) <---------TOE1(2)          <---------At4g35610 ->ARR11(1)            <---------ATHB12     <---------TOE2(3)------>ZmHOX2a(1)    <-------TEIL<------   ggcattcatttcccttctctatccaattaagcgttgattaagacttaaggtaaattcaatgtcctagattcaatttctctttgattcattcatctacttt  21063700                                                                            <------NtERF2     ------>ZmHOX2a(2)                                                     ------>NtERF2    --------->CCA1(2)                                                      --------->ABI4(1)    <------ZmHOX2a(2)                                                     <---------ATERF1(2)   <---------ARR11(3)                                                     --------->ATERF1(2)   --------->ARR14(2)                                                     --------->RAP2.3(3)   <---------ARR14(2)                                                     --------->RAP2.3(2)   <---------AGP1                                                         --------->RAP2.6(2)   --------->AGP1                                                         --------->DEAR3(1)   <---------ARR14(3)                              <---------REM1(1)     --------->ORA47(2)   --------->ARR14(3)                             <---------TOE2(3)      --------->ERF1   --------->ARR11(3)                       --------->AHL20(1)           --------->DEAR4(2)   <-----------ARR10                        --------->AHL20(2)           --------->ATERF1(1)  <---------CCA1(2)  --------->HSFB2a(2)    <---------AHL20(2)           --------->RAP2.3(1) ----------->ARR10   <---------HSFB2a(2)   --------->AHL20(2)           <---------RAP2.3(1) ----DOF2    <-----------GT1      <---------At4g35610           <---------TOE2(3)                <--- ---DAG2   <----------DOF2        --------->At4g35610           <---------TOE1(3)                ----   acccagatctgctctttaccattctcgaatcgatacagctacaaaaaaaattgatgtagcgaaattagggttttcgccgcccattgtgaatttcattttt  21063800                <---------ANAC46           ------>ZmHOX2a(1)           <----------DOF2     <---------ZAT18           <---------DAG2<---------ARR14(2)        ---------->ID1   --------->ARR14(2)    <---------AtLEC2     <---------GLK1(2)    <---------ANAC58   ----------->ARR10                                                     --------    <---------ANAC58<-----------HVH21                                                       <-------TEIL ------AHL20(2) <---------ANAC58                          <---------AtMYB61          <---------WOX13(1) ----->AHL20(2) <---------ANAC58                 ---------->DOF2       <---------ANAC46 <---------TOE2(3)   taatttgcatgtcctttttcgtggtcagatttgtgcaattgattttctaagaaaagagttttggtttcaaattgtgtttagtagctaattgatgttcgtt  21063900                                                                  <---------MYB52(1)                <                                                                  --------->At5g28300              --                                   <---------YAB1                --------->LBD16                 <---                               <----------DOF2                --------->MYB52(1)             <------ZmHOX2a(1)        <---------ANAC58 --------->GLK1(2)                    -------->P                   --------->LBD16        <---------ANAC58--------->ARR14(2)                  ------>ZmHOX2a(1)             <---------LBD16    <---------WOX13(1)  <---------ARR14(2)                 --------->TOE2(3)          --------->WOX13(1)  --------->ATHB12      <---------GLK1(2)               <---------ARR14(2)         <-----------GT1--- <---------YAB1        <------ZmHOX2a(1)                --------->ARR14(2)      --------->MYB52(2)<-- ->MYB52(2)          <---------TOE2(3)                  <---------ARR11(3)<----------DOF2 <----------   tctctgattggcttaatgaaatttaggattctggtttattgttgttagcacttagcagtatccttaccggtaattcctttgtttgtttcaatccaggagc  21064000  Previous    Next  AGI:  At3g56860.1    Description:  UBA2A; RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72884.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21059868    to: 21063216    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56870.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO61177.1) Range:  from: 21063452    to: 21066576    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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