Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------At4g35610  --------->At4g35610 -->ZmHOX2a(2) --ZmHOX2a(2)                                                            ------>ZmHOX2a(1) ----ARR14(3)                                                           --------->TOE1(3) --->ARR11(3)                                                           --------->TOE2(3) ------ARR10                                                       <---------At4g35610 ----ARR14(2)         --------->At4g35610                          --------->At4g35610 --->ARR14(3)         <---------At4g35610                       --------->At4g35610 --->AGP1   --------->ARR14(2)                                  --------->LBD16 --->ARR14(2)      <---------At4g35610                         --------->ANAC46 ----ARR11(3)   ------>ZmHOX2a(1)               --------->TOE2(3)  --------->ZAT2 --->ARR10  <---------ZAT18                    --------->REM1(1)<---------At4g35610 >DOF2      <---------ARR14(2)----------------->AG            <---------LBD16                    <---   cttccgatgaacagggtcctcatcagctacttccctaattcgattggctacatcaacatgcttctccgctgcttccttaagaagactcaaaacttgctcc  21062800                                                                           --------->ABI4(1)                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                                                          <---------ATERF1(2)                                                                          --------->RAP2.3(3)                                                                          --------->ATERF1(2)                                                                          --------->RRTF1(3)                                                                          --------->DEAR3(1)                                                                          --------->RAP2.3(2)                                                                          --------->RRTF1(2)                                                                          --------->DREB2C(2)                                                                          <---------ALFIN1                                                                          --------->RAP2.6(2)                                                                         --------->DEAR4(2)                                                                         <------NtERF2                                                                         --------->ORA47(2)                                                                         --------->RAP2.6(1)                                                                         --------->RAP2.3(1)                                                                         --------->ATERF1(1)                                                                         --------->ERF1                                                                         --------->RRTF1(1)                                                                        <---------DEAR4(2)                                                                        --------->At4g35610                                                                        --------->ABI4(1)                                                                        <---------At4g35610                                                                        <---------DREB2C(1)                                                                        ------>NtERF2                                                                        <---------ATERF1(1)                                                                       --------->DEAR3(1)                                                                       <---------DEAR3(1)                                                                       --------->ATERF1(2)                                                                       --------->RAP2.3(2)                                                                       --------->RAP2.3(3)                                                                       <---------ATERF1(2)                                                                       --------->ANAC46                                                                      --------->RRTF1(1)                                                                      --------->ERF1                                                                      <------NtERF2                                                                      --------->RAP2.6(1)                                                                      --------->RAP2.3(1)                                                                      --------->DEAR4(2)                                                                      --------->ORA47(2)                                                                      --------->ATERF1(1)                                                                     <---------ATERF1(1)                                                                     ------>NtERF2                                                                    <---------DEAR3(1)                                                                    --------->DEAR3(1)                                                                   --------->ATERF1(1)                                                                 --------->O2                                                                 --------->ANAC46                                                                 <---------TGA1a                                                             <---------HSFB2a(2)                                                             --------->HSFB2a(2)                              <-------TEIL                 <------ZmHOX2a(2)                     --------->LBD16                      --------->ARR14(2)                     ------>ZmHOX2a(1)                    <---------ARR14(2)                   ------>ZmHOX2a(2)                      --------->AGP1<---------RAP2.3(1)                  <------ZmHOX2a(2)                       <---------ARR11(3)                 --------->ARR14(2)                       --------->ARR11(3)                 --------->AGP1                       ----------------->AGL1<------NtERF2                 <---------ARR14(2)               <---------ANAC58<-----------HVH21                 --------->ARR11(3)               <---------ANAC58<---------ATERF1(1)                 <---------GLK1(2)               --------->ATHB12<---------O2                 <---------ARR11(3)             <---------YAB1   --------->TGA1a                 ---- -------DOF2----------->RAV1(1)    <-----------TGA1<---------WOX13(1)<---------RAP2.3(1)        <----   tttgaaaatggttccaacagatcctgaattggttcatcgtcatcatcttcttgattgccagatccagacgtcgccgccgcctctatacgattcccatccg  21062900     ------>ZmHOX2a(1)     <---------YAB1   ------>ZmHOX2a(2) --------->ARR14(2)                                                        --------->TOE1(1) <---------ARR14(2)                                                        --------->TOE2(1) ------->RAV1(2)               <-----------TGA1                           ------>ZmHOX2a(1) -------HVH21        --------->YAB1               <<<<<<<<<TBF1  ------>ZmHOX2a(1)   tctgatcctcattctcatcaccatcatcttcatcgtcatcatcttctacttcttcttcttgctcttcctctacttcctcgtattcaacttcttcaacgtc  21063000                                               <------NtERF2                                               --------->ATERF1(1)                <---------MYB52(1)                                              <---------ATERF1(1)              <-------TEIL                                              ------>NtERF2                 --------->At4g35610                                              <---------SPL7       <---------MYB46(3)                                             <---------ANAC46      --------->HSFC1(2)                                           <---------ATERF1(1)     --------->HSFB2a(1)                                <---------At4g35610                <---------HSFC1(2)                             --------->At4g35610  <---------At4g35610<---------ARR14(2)                          --------->ZAT2   --------->LBD16         <---------DEAR3(2) <---------GLK1(2)                          <---------ZAT2   ------>NtERF2          <---------DEAR3(1)----------->ARR10                     <-----------GT1    ------>ZmHOX2a(1)      ----------->HVH21 --------->TOE2(3)                 --------->AHL20(2)  ------>ZmHOX2a(1)   <---------GLK1(2)  <---------At4g35610                 <---------AHL20(2) <---------ALFIN1    <---------At4g35610 <---------ZAT2          <---------YAB1 --------->ANAC46<---------LBD16--------->At4g35610 --------->ZAT2          ------>ZmHOX2a(1)  <---------At4g35610  --------->At4g35610--------->ARR14(2)         -----   tccttgattatcctgatttttaattacaagctgctgctcctcctccggcgtctgcttcagcttctgcgacggttcttcagcttcgttagattcttctcct  21063100                                                      <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   <-----------GT1                ---------->ID1                       <---------TOE1(2)           --------->At4g35610            <----------DOF2                 <---------TOE1(3)                    <---------At4g35610            --------------------->WRI1--------->ARR11(3)                       --------->DAG2    ----   <----------DOF2                    <---------ARR11(3)     <----------DOF2  ---------->DOF2<------- ->ZmHOX2a(1)  XXXXXXXXXXXXXXXXXXXX>MIR4239 <---------TOE2(3)--------------------->WRI1 <-----------GT1   tcgagctttctcttctttgtcattttcgaattctaatggagattttagggtttcgaatgttttctttggtttcttctccaaaaagctgattttcccctcc  21063200                        <------MYB46(1)                        ----------->GT1                       <---------AtMYB61                 <-----------RAV1(1)                *TSS  <---------ANAC46               <----------DOF2             ------>NtERF2            --------->RRTF1(3)            --------->RAP2.3(2)            --------->RAP2.3(3)            --------->RRTF1(2)            --------->DEAR3(1)           <------NtERF2<------MYB83                                                      <----------           --------->RAP2.3(1)                                                            <---------AHL20(2)           --------->ORA47(2)                                                             --------->AHL20(2)          <---------RAP2.3(1)         --------->TOE1(3)                                 <-----------TBP     ---------->DOF2<---------MYB46(3)--------->TOE2(3)                              <---------AHL20(2)     --------->YAB1--------->ALFIN1 ------->TEIL                           --------->ANAC46 -->ZmHOX2a(1)<---------MYB52(1)    -------->P                          <---------At5g28300 --------- --ALFIN1--------->ANAC46      --------->YAB1 <----------DOF2  <-----------GT1      --------->AHL20(2)   ttatctataatgcgccgctatgtgggtggtatatcatcaacctcaagtctttgctaagtggatttttacacatttacccctaaccattttatatatataa  21063300           <------------CBF          --------->ATHB12          <---------ICU4                                                              --------->LBD16         --------->ICU4                                                               ------>NtERF2         <---------YAB1                                                              --------->ANAC46       --------->ATHB12                                                              --------->ANAC58       <---------ICU4                                                                --------->ANAC58       --------->YAB1                                                        ---------->DOF2      <---------ATHB12                                                    --------->TOE2(3)         -      --------->ICU4                                                      --------->TOE1(3)       <--      <---------YAB1                                                   --------->MYB52(1)  ------->MYC3    --------->YAB1<----------DOF2                                   --------->YAB1  <---------LBD16-- -TBP<---------TOE2(3)     ---------->DOF2 ---------->DOF2      ---------->DOF2XXXXXXXXXXXXXXXXXXX>MIR3434* -->TBP-------->HAHB4 <---------TOE2(3) --------->ANAC46  ----------->GT1<----------ID1    <-------MYC3   gcccattaatgattattgggctttaagtttaaagacccatttacgaaaagatgcttaagtaagaaaaaaagaataacgtcaaagttcccgccatgtgttt  21063400            ------>NtERF2            <<<<<<<<<AtERF-4            <<<<<<<<<AtERF-3                        *TSS           <---------RAP2.6(2)                      ---------->DOF2           <---------DEAR3(1)                      ------->GAMYB           <---------RAP2.3(2)                    --------->MYB46(3)           <---------RAP2.3(3)                   --------->ANAC58          --------->RAP2.6(3)                    --------->ANAC58         --------->MYB52(1)                 --------->ANAC58         ------>NtERF2        ----------->HVH21                   --------->ANAC58  --------->ARR14(2)     --------->At4g35610 -------->LBD16                          <---------------------WRI1 --------->DEAR3(1)        <------ -------LBD16<---------At4g35610     --------->At4g35610   --------->DAG2            <---------At4g35610 ------->ANAC46                      <---------At4g35610 ---------->DOF2        ---------->DOF2   cccgcgagacttgacggctcataagattagtcagaactcagaagacaagacaaccaaagaaaaggtttcgcctcccttcttacaaagagctgcaattttc  21063500                                                                     --------->LBD16                                                                    --------->HSFB2a(2)                                                                    <---------HSFB2a(2)                                                                  =================================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                                 --------->ARR11(3)                                                                 --------->ARR14(2)          --------                                                                 --------->AGP1              --------                                                                 <---------ARR14(2)          <-------                                                          ------->TEIL                       <-------                                                        --------->ZAT14                     <------ZmHOX2a(1)                                 <---------AHL20(2)     <---------ZAT18                  <---------LBD16 -----GT1    <<<<<<<<<TBF1      --------->AHL20(2)<----------DOF2<---------ARR11(3)      <-----------RAV1(2)   agtctcttggtcttcttcttcgtcttgttttcaaattaatgtctctctgtctctttagtgaaccctagatccagaaattagagtttggagcccaggattc  21063600  <-------TEIL ->ARR11(1)                                                                 <----------DOF2 ->ARR14(2)                                  ----------->GT1      <-------TEIL                <------ --ARR14(2)                                 <---------TOE2(3) <---------TOE1(2)          <---------At4g35610 --GLK1(2)             <---------ATHB12     <---------TOE1(3)------>ZmHOX2a(1)    <-------TEIL<------   ggcattcatttcccttctctatccaattaagcgttgattaagacttaaggtaaattcaatgtcctagattcaatttctctttgattcattcatctacttt  21063700  Previous    Next  AGI:  At3g56860.1    Description:  UBA2A; RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72884.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21059868    to: 21063216    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56870.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO61177.1) Range:  from: 21063452    to: 21066576    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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