Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ATHB12                    --------->DAG2                  ---------->DOF2                                                       <----------DOF2              <---------------AGL15                                                  ---------->ID1              <----------DOF2    ---------->DOF2                     --------->ANAC55(2)------>ZmHOX2a(1)         <<<<<<<<<TBF1    <----------DOF2    <---------YAB1      --------->AHL20(2) <-----------GT1 ->MYB46(3)   --------------->AGL15        --------->YAB1        <---------AHL20(2)<-----------GT1 --   ttctatgtttcttcttctttaaaaggggatttattgaaagcacaattttgatatttctcatttgcatttttatgtaatggattttttatccttttctatt  21042200                   <----------DOF2                                            --------->ANAC58            --------->ATHB12                                          <---------WOX13(1)           --------->AHL20(1)                                       --------->ATHB12           --------->AHL20(2)                                      <---------YAB1           <---------AHL20(2)                                    --------->CCA1(2)          --------->AHL20(2)                                    --------->ARR14(2)                ---     ----------->GT1      --------->GLK1(2)                     <---------ARR14(2)                --- -------->DOF2<---------WOX13(1)          ---------->ID1  --------->DEAR3(1)  --------->ANAC58 ------   gaaaagaaggaaattaattggctttaagactctgttttctacttggcccatataaacacaccgagggatatgattgaaccaagaaattgaaccagaacat  21042300                                                                                 ----------->GT1                                                                                 --------->LBD16         <----------DOF2                                                       <---------LBD16      ------>ZmHOX2a(2)                                                   <---------CCA1(2)     <------ZmHOX2a(2)                                                  --------->YAB1    <---------ARR14(2)                                                ------>ZmHOX2a(2)    --------->ARR14(2)                                                ===========================HOX2a_HOX2a --------->YAB1                         <----------DOF2              <------ZmHOX2a(2)    ------>ZmHOX2a(1) ------>YAB1                   <---------ARR11(3)                    ============================HOX2a_HOX2a ------>WOX13(1)       --------->MYB52(1)   <---------ANAC46        --------->ARR11(3)--------->ARR14(2) --->TOE2(3)    <-------TEIL   --------->ARR11(3)                   <---------ARR11(3)<---------ARR14(2)   taatcagatcggtttaagttcatactaactggttatcttcttctttgtggggaagtcgaagggtttgtgagatctcataactccggtgaatcctcttcgt  21042400                                   -------->P                                   ------->TEIL                               <-----------ARR10                               <---------ARR14(2)                               --------->GLK1(2)                               --------->ARR14(2)                              <---------GLK1(2)                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                                            --------->ATHB12                      <-----------ARR10                                      --------->ATHB12                      --------->ARR14(2)                                     <---------AHL20(2)                      <---------ARR14(2)                                    --------->ICU4                      <---------ARR11(3)                                    --------->AHL20(2)                      <---------AGP1                    --------->ICU4   <---------YAB1                      --------->ARR14(3)              <---------TOE1(2) <---------AHL20(1)                      <---------ARR14(3)           <---------ANAC55(2)  <---------AHL20(2)                      <---------GLK1(2)    --------->ANAC58             --------->AHL20(1)                      --------->ARR11(3)   --------->ANAC58            <---------AHL20(2)                      --------->AGP1       --------->ANAC46            --------->YAB1<------------CBF                     <---------CCA1(2)    <---------TOE1(2)            --------->AHL20(2)   ccagactccagactccagactccagatcttcagaatctacctcgcacgaaatctcgtaagtattagttggaaattatatttattagttattggagaaact  21042500        --------->YAB1        ---------->DOF2       <---------ATHB12       --------->ICU4                      <---------TOE2(3)               --------->AtMYB61       <-   ------------>CBF           <---------ARR11(3)     --------->YAB1        <---------MYB59   --------  --------->ANAC58          ----------->GT1<---------TOE1(3)         <-----------GT1      --------->YAB1  --------->ANAC58   <---------MYB59    --------->ICU4        <---------TOE2(3)      ------------>CBF   tgataagcaataaagagttttgacctaaacaagttatttgtaattagggttttaaacatagtctaatgttttttcgacctaaacagagacaatgacaaag  21042600                                             <---------GLK1(2)                                             --------->ARR14(3)                                             <---------ARR11(3)                                             <---------ARR14(3)                                      ------>ZmHOX2a(2)                                    <---------ARR11(3)                                  <----------DOF2   <---------MYB46(3)               --------->ARR11(3)                         ----------->HVH21 --------HSFB2a(1)    --------->WRKY38(1)    --------->ARR11(3)                <---------ZAT6 -->DOF2    ------->TEIL  ----------->HVH21  <---------ARR14(2)           <---------REM1(1)       ---   aaggtttgttcatgtatcaacgagttgcccgacgatttgatcttgaagattttgtcattcgtttctactaaacatgttgtagtgacaagtcttttgtcaa  21042700                                                       --------->ZAT6                                                    <------ZmHOX2a(2)                          ------                                        <---------TOE2(1)                               --------->ZAT14            <----------DOF2             <---------TOE1(1)                        --------->ANAC58   -      <---------GLK1(1)         --------->ANAC46<---------HSFB2a(2)              --------->ANAC58   -      --------->GLK1(1)      --------->ARR14(2) --------->HSFB2a(2)        <---------HSFB2a(2) ------ ------>AHL20(2)             <---------ARR14(2)<---------LBD16             --------->HSFB2a(2) ------   aaaaatggaaatctctttggacaagggtgcctatactcaagtacgatgttcgggatcacactagatttgaacgatttctcgacaagtctctgttctcaca  21042800                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                        <---------ICU4                                                                                        --------->YAB1           <---------HSFC1(1)                                                        --------->REM1(1)           >>>>>>>ZML2                                                             <----------DOF2     <---------TOE1(2)                                                         <---------ZAT18<------ --->ANAC46--------->HSFB2a(2)                                                 --------->ZAT18------- ----->MYB46(1)     <---------RAP2.6(3)                                       --------->DEAR3(1)    < ----->MYB83  ---------->DOF2                       ---------->DOF2      ----------->ARR10<---------YAB1 --->ANAC58--------->HSFC1(1)         ----------->HVH21 --------->ARR11(3) <---------ARR14(2)-------- --->ANAC58<---------HSFB2a(2)    <---------ANAC55(1)  <<<<<<<<<<<<<<<<<LFY--------->ARR14(2)<-------   ccaatctcatgttctagaaagccttcatgtcgaattaagtgtgaccctgtggaataaagacattggaccatggattagaaccgcgcttcatcatcatcat  21042900           <---------At4g35610      <---------ANAC46   --------->DEAR3(1)   --------->AtMYB61   <---------ALFIN1  <---------ZAT2  --------->ZAT2 ------>NtERF2           <---------ANAC58 ---ICU4<---------MYB52(1) -->ATHB12 --------->At4g35610                       ------>ZmHOX2a(1) ---------ALFIN1<---------ZAT6                       --------->LBD16 ->ICU4--------->LBD16   <---------ANAC58          ----------->RAV1(2)         ---------->ID1 --YAB1<-----------HVH21 <---------ANAC46     <-----------GT1     --------->AtLEC2           --------   tgccacctccgtgagctagagatagatgcttgtattgtccataccgtattacctcctgaattgtttacctgcaaaacacttgttgtcttgaaactcaaag  21043000                      ------>ZmHOX2a(1)                 <---------HSFC1(2)                 --------->At4g35610                 <---------ZAT2                 <---------At4g35610                                <---------ALFIN1                 --------->HSFC1(2)                              <---------WRKY18(1)                 --------->HSFB2a(1)                            --------->WRKY38(1)          ------>ZmHOX2a(2)       ------>ZmHOX2a(2)                                        --------->WRKY12            <------ZmHOX2a(2)       ======================HOX2a_HOX2a                  --------->ZAT14                  <---------ARR14(2)   <---------ZAT6<---------HSFB2a(1)                      <---------ZAT18                  --------->ARR14(2) -->DOF2    --------->ALFIN1   ------->GAMYB              <---------ZAT14             <----------DOF2   gtatagtgatcgatgtggaagctcctcttacaacggtctctctcccatccctaaaaactctgcacattgaccactcgagtttattcgactttggatccct  21043100  Previous    Next  AGI:  At3g56780.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At3g56780 [Arabidopsis Thaliana] (GB:Q9LES9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56420.2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63564.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 21042592    to: 21044181    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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