Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ATHB12                             ----------->GT1      <-----------GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ZAT6     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->WOX13(1)                            <------MYB46(1)     ---------->DOF2  <---------AHL20(2)                             <------MYB83     --------->TOE2(3)  --------->AHL20(2)                           <--------P         --------->TOE1(3)            ------ ------->YAB1                               <---------AtMYB61  ------->GAMYB                   ------ -->LBD16                               <---------ANAC58      <---------MYB111(1)              ------ --LBD16                                <---------ANAC58      --------->MYB46(3)         xxxxxxxxxxxx ->LBD16               <--------P <------ZmHOX2a(1)           <---------MYB52(2)--------->ANAC58 -LBD16             --------->LBD16     <---------ANAC46      <---------MYB111(2)    <---------ALFIN1 -->RAV1(2) <-----------HVH21 ---------->DOF2 <---------SPL7  <---------MYB46(2)--------->ANAC58-----   ataataaatcaatgtgtcatccctggtaagtgtaaaggactgtcttgtggtagggttatatacaactaccttaaaaccagacaaacaacacatcaaaccg  21000600         ------>NtERF2                                                                        -------        --------->ANAC46                                                                    <xxxxxxxx       --------->ZAT18                                                                     --------->ANAC55(2)       <---------ZAT18                            --------->ARR14(2)                       --------->O2      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ARR14(2)                       --------->ANAC46 --------->YAB1              <---------------AtSPL8                                        --------->ANAC58 ----->GT1               <---------WOX13(1)   ----------------->AGL1                       --------->ANAC58 --->TOE1(3)        --------->LBD16           <-----------------AGL2                       --------->ANAC55(1) --->TOE2(3)       <---------LBD16    <----------DOF2                                      --------->bZIP60(2) xxxxxxxxxxx>smallRNA(se3)   <---------------AtSPL3                                 <---------HSFB2a(1) ---->At5g28300   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <------ZmHOX2a(1)         --------->HSFB2a(1)   taaacatactgcgccattctcccagggattgatagtactgcttctatgtccgtatttggaggataagtagacgataagcctaagaaacattccacgtaag  21000700                                       <---------At4g35610                                       --------->At4g35610                                    <------ZmHOX2a(1)                                    <-----------                              <---------ICU4                                            <---------At4g35610 -->MYB52(1)                  --------->YAB1                                            --------->At4g35610 xxxxxxxxsmallRNA(i)         --------->ICU4                                       xxxxxxxxxxxxxxxxxxx   ggcctgaatcgaagccgaagatgaaatgggcatcatgaggaggctgagtcaaaaatcgagtcactatcgattctatgaagtctctacgactgctgataat  21000800                    <---------ARR14(2)                                  <-----------HVH21                    <---------GLK1(2)                               <---------ALFIN1             <---------HSFB2a(2)                 <------NtERF2     <---------ZAT14        --------->At4g35610                     ------>NtERF2      --------->ZAT14        --------->ZAT2                          --------->LBD16   >>>>>>>>>>>>>>>>>LFY        <---------ZAT2      --------->TOE2(3)  <---------LBD16   --------->ANAC46        <---------At4g35610 --------->TOE1(3) <---------LBD16    --------->ANAC58                   <    --------->AtMYB61     ------->TEIL   <---------ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------AGL2  --------->HSFB2a(2)     <---------ZAT18             --------->ANAC58        <---------GLK1(1) xxxx>smallRNA(fl3) --------->ARR14(2)   --------->ARR14(2)    <-----------GT1           --------->GLK1(1)   ggatgaccacagcttcgagacagatttgaacctcaatagtgcgatttcgccgggagtgtttttagtcactccactgtcagtattcagagggatatcgata  21000900                                 --------->ARR11(3)                      <------NtERF2                     <---------RAP2.3(1)                    <---------At1g77200                    <---------DREB2C(2)                    <---------ANAC46                    <---------DEAR4(1)       --------->REM1(2)     --------->ALFIN1     --------->LBD16--------->ETT(1)    <---------ANAC46<---------RAP2.3(3)  --------->LBD16   <---------DEAR3(1)                         <-----------TGA1  ------>NtERF2   <-----------HVH21                   <---------ANAC58                 --------->TOE1(3) --------->DEAR3(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ------>ZmHOX2a(1)           --------->TOE1(2) --------->ANAC46<---------ZAT6<---------AtMYB61      <---------ANAC58      <---------MYB52(1) ---------LBD16  <-----------RAV1(1)              <----------DOF2   <---------ICU4     --------->TOE2(3)   actccgccgtgaagaagtagtgtcggcgagggtgaggtctcgttgctattctctttgcgtcctctcgtcatcatctctgttttgtcaaaccttagactaa  21001000                                                                                                   <x                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <---------YAB1         <--                                                                        --------->AHL20(2)       ====                                                                        <---------AHL20(1)       <xxx                                                                        <---------AHL20(2)       ----                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 ----------->GT1                                    <---------AHL20(2)         ------          <---------------AGL15                                    <---------AHL20(1)          <-----          --------------->AGL15       <------------CBF             --------->AHL20(1)    <---------AHL20(2)      <---------ZAT18            ----------->GT1                --------->CCA1(2)    <----------DOF2      --------->ZAT18   ----------->GT1                        --------->ARR11(3) <xxxxxxxxxxxxxxxxxx   tgaacgagggctctctatatagtatatagtatatagagtttattgcaaataaggcatttgtcttagatatatattttattttaggcacttttaaaatgat  21001100                          ---------->DOF2                      <---------LBD16                     --------->LBD16            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->MYB59--------->LBD16     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <----------DOF2 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <----------DOF2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------REM1(1) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------At4g35610 --------DOF2        ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ===========================HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <---------TOE2(3) -->ZmHOX2a(2)      <---------LBD16    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <-----------GT1 --->ARR11(3)   <----------DOF2      <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    -------- ----ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<----------DOF2 xxxxsmallRNA(le3) ----------->RAV1(2)<-----------GT1   <-----------RAV1(1)    ------->TEIL<---------   ctttagatttaggcacttctttcctggggaaagttgtttttacccttacagagagatgatgttgctctttctttgttgatgaacttttacgttttacact  21001200                                                                    <------------CBF                                                                   --------->ATHB12                                                                  <---------YAB1                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            --------->MYB46(3)                 --------->DEAR3(1)                            <---------MYB111(2)               --------->At4g35610                         --------->AtMYB61                    <------NtERF2                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------At4g35610                     -------->P <----------DOF2          --------->TGA2(1)                     ------>MYB46(1)                     <---------bZIP60(1)                    ----------->RAV1(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   --------->AtMYB61                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------TGA2(1)                  --------->MYB46(3)        --------->ATHB12 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --           <---------ANAC58------>MYB83  <------------CBF--------->bZIP60(1)                       == ->ZAT6    <---------ANAC58------>MYB46(1)  --------->YAB1<-----------HVH21            <-----------GT1 --GT1 --------->YAB1------>MYB83       --------->ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxx   agaaatcaaaaatacttgcgaccaacaccaacaactttggagtcattgattacagagtgatgtcagcgacgattggaaattcagacgattaacaattggt  21001300                                                           <----------ID1                                                   ----------->GT1                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)                                                 ------>ZmHOX2a(2)                             <-----------GT1    --------->CCA1(2)                            <-----------GT1     <------ZmHOX2a(2)                       <---------GLK1(2)       <---------ARR14(2)                              <-----                       --------->ARR11(3)      <---------AGP1   --------->ANAC58             <-------                       <---------ARR11(3)      <---------ARR11(3)         --------->DAG2<------MYB46(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->AGP1   --------->ANAC58       --------->MYB59 ---->ZmHOX2a(1)  <------ZmHOX2a(2)            --------->ARR14(2)        ---------->DOF2<------MYB83 ========================HOX2a_HOX2a           --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------GLK1(1) --------->ANAC46 <---------TOE1(2)   cctcatgagatgtgaatgcgatctagatttttaacatcccacattttgagatctggaaaaaacaacaagaaacaaaaaagtcccacgatttggtattacg  21001400                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ------->MYC3                        --------->GLK1(1)     ------->MYC2                      <------ZmHOX2a(1)             <---------WOX13(1)    --------->YAB1     <-------MYC2                    <---------ANAC55(2)            <---------ANAC58       <---------ICU4     <-------MYC3 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ATHB12     --------->YAB1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC55(2)          <---------YAB1        <---------ICU4   <---------TOE1(2)  <---------YAB1 <---------TOE2(3)       <----------DOF2         --------->YAB1 ----YAB1      <---------ZAT14       <---------TOE1(3)<---------WOX13(1)        <---------TOE2(3) <-- ----GT1       --------->ZAT14<-----------RAV1(2)   --------->ATHB12<---------ANAC58<-------TEIL<----   atttgcacgtttttttgttcagtgatttttgtgcaggttaaggaactcaagaagtgattgatactttgttgattgctcaattgatgttcataatcatgtc  21001500  Previous    Next  AGI:  At3g56670.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G50220.1) Range:  from: 21000014    to: 21000974    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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