Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->HSFC1(2)                       <---------GLK1(2)                       --------->ARR14(2)                       <---------ARR14(2)                                                        <---       --------->ALFIN1<---------ARR11(3)                                               <------NtERF2     <---------ANAC58 <---------HSFB2a(1)                                              --------->LBD16     <---------ANAC55(1)          <---------HSFC1(2)                                 <------NtERF2     <---------ANAC46 --------->HSFB2a(1)                                            <---------LBD16     <---------ANAC55(2)    ---------->DOF2                                          --------->RAP2.3(1)     --------->ANAC55(2)--------->GLK1(2)        <-------TEIL                  ---------->DOF2   ----     <---------ANAC58 --------->HSFC1(2)      --------->REM1(1)            --------->At4g35610   ---- -----------RAV1(1)   <---------HSFC1(2)     <-------TEIL                  <---------At4g35610   <--- -----ANAC58         ----------->ARR10    --------->At4g35610              <---------LBD16       <--- -----ANAC58       <------ZmHOX2a(1)    <------ZmHOX2a(1)       <---------ATHB12  <---------ABI4(2)   ttgtgttgcgtgtgagtgagaggaagattctaaagaagcttaggagctacatccatacccagaccaatgagtcttccagcggaaagcgccggaagaagat  20972100           --------->ANAC58           --------->ANAC58           --------->ANAC46    <---------MYB46(3)          ------>ZmHOX2a(1)  <---------ANAC46      <---------ARR11(3)     <---------ANAC58 ------MYB46(3)              <---------ANAC58 ----->HSFC1(2)     <----------DOF2          <---------DAG2 ----->HSFB2a(1) <---------ARR11(3)          <----------DOF2           <-----------GT1            <-- ------HSFB2a(1) --------->ARR11(3)       <-----------GT1     <---------YAB1            <---------YAB1 ------HSFC1(2) --------->REM1(1)       <-----------GT1     <-----------GT1             <---------TOE2(3)   ggttccaaaatcctagcaacatctttagtttgcttgttgaattttcacttttcatccccaagttaccatttttaaacgacttgttctactaacattgagt  20972200                            --------->ARR14(2)                            <---------ARR14(2)                       <---------TOE1(3)                  ------->TEIL                                       <---------TOE2(3)                  <---------ARR14(2)               --------------->AGL15                  --------->ARR14(2)               <---------------AGL15                  --------->GLK1(2)               <-----------------AGL3                  <-----------ARR10               ----------------->AGL3                  <---------ARR11(1)              <-----------------AGL2                 <---------ARR14(1)               ----------------->AGL2                  ---------->DOF2                 <---------CCA1(2)       <----------DOF2 <---------HSFB2a(2)          ---------->DOF2         --------->YAB1 <---------At4g35610     ---------->ID1 --------->GLK1(2)  ---------->DOF2 <--      --------->YAB1--------->TOE2(3)<---------GLK1(2)   --------->HSFB2a(2)     --------->AHL20(2) -----TEIL     ------>ZmHOX2a(2)   ------>ZmHOX2a(2)   <---------AHL20(2)     --------->YAB1  <------ZmHOX2a(1)   ttcatctataatggtgatcgaatcttagcagatttgatcgattcttttttgttctatttatagaaattcttgaggtttaaaaataaaagaaagaaaggat  20972300                                                               --------->ATERF1(1)                                                               --------->RAP2.3(1)                                                              <---------DEAR4(2)                                                              <---------RAP2.3(1)                                                              <---------ATERF1(1)                                                              ------>NtERF2                                                              --------->LBD16                                                             <---------ATERF1(2)                                                <---------ANAC58 ------>NtERF2                                                <---------ANAC58--------->DEAR3(1)                                                ----------->GT1<------NtERF2              --------->ARR11(3)            ---------->DOF2  --------->DEAR3(1)              <---------AHL20(1)        ---------->DOF2      <---------DEAR3(1)                   ===           ----------->GT1           --------->ANAC58        --------->ATERF1(2)     ----------->GT1    <---------ANAC58                 --------->ANAC58       <---------LBD16       <---------AGP1  ===    <---------ANAC46             --------->ANAC58        --------->DAG2      ----------->GT1      ---    <---------ANAC58             --------->ANAC58       ---------->DOF2 ----------->HVH21 --------->ICU4 -------AHL20(2)                 --------->ANAC46 ----------->HVH21  <-----------HVH21--------->At5g28300   tttatatcgtgagtagtatattgagtaatcttcagacggaagcaaagaaagcgtgacaaaaagccggcgactgtcagacaggtagaactgtaaatatgga  20972400                                      --------->ALFIN1                                     <-------PIF5                                     ------->MYC2                                     <-------MYC3                                     ------->MYC3                                     ------->PIF4                                     <-------MYC2                                     ------->MYC4                                     <-------PIF4                                     --------->TOE1(2)                                     <-------MYC4                                    =====================bZIP_DOF                                    <---------TGA1a                                    --------->O2                                    =====================bZIP_DOF                                    <---------PIF3(3)                                    --------->PIF3(3)                                    <---------O2                                    --------->TGA1a                                <-----------HVH21                               ----------->HVH21                               --------->ALFIN1                              <-------PIF5                              ------->MYC2                              ------->PIF5                              <-------MYC2                              -------->ABF1                              <-------MYC4                              ------->MYC4                              <-------MYC3                              ------->MYC3                             >>>>>>>>>>ABI5                             --------->O2                             ============================bZIP_DOF                             >>>>>>>>>>AtMYC2                             ============================bZIP_DOF                             >>>>>>>>>>HY5                             --------->ANAC55(2)                             <---------TGA1a                             <---------O2                          ---------------->PIF3(2)                  ---------->DOF2  ------------>OsbHLH66            ==================================bZIP_DOF            <----------DOF2  --------->TGA1a <---------AHL20(2)            --------->TOE2(3)<---------ANAC55(2)            ===========================bZIP_DOF            --------->TOE1(3)<---------bZIP60(2)        ===============================MYC_MYB        <--------P============================bZIP_DOF        ======================================MYC_MYB       ================================MYC_MYB---------->DOF2       <-------GAMYB<---------TOE2(3)------->PIF5  --------->ARR11(3)       =======================================MYC_MYB         <----------DOF2                   <----      ----------->GT1    ----------------->PIF3(1) <---------ARR11(3)                        <------- =============================================bZIP_DOF <-----------GT1                       -------- ======================================bZIP_DOF   <------ZmHOX2a(1) --------->ANAC46  <----------ID1 ------->DOF2     =====================bZIP_DOF <---------TOE2(3)<---------REM1(2)  --------->CCA1(2)   gaaagatggggttactttaacaaaggtagacacgtggcacgtgggaattaaaggatattacagactttacacagaattacacagagataagacaagttct  20972500                                                       --------->GLK1(2)      <----------DOF2         *TSS                    <---------GLK1(2)   <---------TOE1(3)       ---------->DOF2          ----------->ARR10  <-----------GT1    ------->GAMYB              ------->GAMYB ------DOF2         --------->ZAT6             <---------ANAC46                      --------->MYB52(2) --ARR11(3)       <-----------GT1            --------->MYB52(1)                     <-------TEIL ->ARR11(3)      <-----------GT1        <---------ANAC46      -------->P     <----------DOF2    -----   tttttaagcttttttttttttaacagtcaaaaagactcaatagagtgtaacggagagattcttctaccagagttgctctcttttggttcgttttcttcct  20972600                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                  <---------ZAT2                                                                              <---------WOX13(1)                                   <<<<<<<<<TBF1                            --------->ATHB12                           <---------TOE1(3)                            <-----------GT1           <--         --------->YAB1<----------DOF2                ------>ZmHOX2a(2) ------->TEIL            <----        <---------ATHB12   <---------TOE2(3)        <---------AGP1   <---------ANAC55(2)     <------- ->ZmHOX2a(1)      <---------GLK1(2)           <----------DOF2       --------->ANAC55(2) <----------DOF2   ccaaaatccaatcttaccacagtttctttagggtttcttcttcgtcttcctttggatctatgtgaacaggtatgtaactgattgagctgctctttctgat  20972700                                                                             --------->ARR14(2)                                                                         <------ZmHOX2a(2)                                                                     <---------TOE1(2)                                                                 <------ZmHOX2a(2)     --------->AHL20(2)         <---------AHL20(1)              <---------ARR14(2)   --------->ANAC58             --------->AHL20(2)              --------->ARR14(2)   --------->ANAC58             <---------AHL20(2)              --------->AGP1   ----------->GT1          --------->YAB1                      <---------ARR11(3) ---------GT1              <---------YAB1         <---------ANAC58 --------->TOE1(2)             ---- -----WOX13(1)       ------->TEIL                 <---------ANAC58------>ZmHOX2a(2)        <---------ANAC46 --YAB1             <---------CCA1(2)           <-----------GT1 --------->ARR11(3)      <-----------RAV1(1)   taaccaagtaaattgttctcttgaatcttatcattttattttgtttcatttttcttgttggatttagatccttggatcaaatttgctcaaatgttgtggt  20972800                                                                         <---------ANAC55(2)                          <---------CCA1(1)                              --------->ANAC55(2)                          <---------RVE1(1)                   <---------GLK1(1)                      <---------ANAC46                       <---------ARR14(2)                     <---------LBD16      <-----------GT1    --------->ARR14(2)      <-----------GT1             >>>>>>>>>ARR2--------->GLK1(1)                 <------ZmHOX2a(1)  <---------AHL20(2)           <---------YAB1--------->ARR14(2)           --------->ATHB12   <---------ANAC58         <----------DOF2 <---------ARR14(2)          --------->ICU4      <---------ANAC46 ------>DOF2--------->ATHB12  <-----------GT1        <---------YAB1      <---------ANAC58   aaagtctgtgcctttgattgtatttcggatattttctgtgtgttttactctgatattgattaggatttgtgtatttcgtattttttttttccattgaagc  20972900                                                --------->ANAC58                                                --------->ANAC58                     <-----------GT1                                               --------->SPL7            <<<<<<<<<GATA-4                                              --------->MYB52(1)         <<<<<<<<<GATA-3                                              ------>MYB83               <<<<<<<<<GATA-1                                              ------>MYB46(1)            <<<<<<<<<GATA-2                                     --------->ATHB12                    <------ZmHOX2a(2)                                    <---------YAB1                       <---------GLK1(1)                         ------>ZmHOX2a(2)  ------->GAMYB               --------->ARR11(3)                       <---------ARR11(3)--------->MYB52(1)             <---------ARR11(3)                       --------->ARR11(3)<-----------GT1                <---------ARR14(2)                     ------>ZmHOX2a(2) <---------WOX13(1)      <---------GLK1(1)  --------------->AtSPL8                     ===================HOX2a_HOX2a         <---------YAB1------>ZmHOX2a(2)         ===============================HOX2a_HOX2a   --------->ARR11(3)<---------AGP1         ------>ZmHOX2a(2)       ------>ZmHOX2a(1)---------->DOF2      <---------CCA1(2)<----------DOF2       --------->ARR11(3)===============HOX2a_HOX2a   <---------ARR11(3)--------->ARR14(2)    -------   gttttctgtgatctggtttttgatcgatcttattcctcttgattaaccgaacgaaagatgttttgatttctgtagatctcttgcattgtactttcttcat  20973000  Previous    Next  AGI:  At3g56570.1    Description:  SET domain-containing protein. similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67091.1); contains InterPro domain RuBisCO-cytochrome methylase, RMS1 (InterPro:IPR011383); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 20969639    to: 20972116    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g56580.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.1); similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.2); similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.3); similar to unknown [Populus trichocarpa] (GB:ABK95425.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RIN Range:  from: 20972530    to: 20974727    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version