Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->MYB52(1)      <------      ----------->HVH21                      <---------ALFIN1        ------->GAMYB   ----------->RAV1(1) >ANAC58          <---------ANAC46      --------->TOE2(3)           <---------MYB52(2)       <------- >ANAC58   --------->ANAC58        <-------TEIL                     --------->MYB46(3)       <------- >ANAC46   --------->ANAC58 <----------DOF2  --------->ZAT6 ----------->GT1      <---------ZAT6   ccaagtctctaacaggcatttcgtcgaacactttagatgcaatctcaacacttccattcgcagagtaacaacgaacgagactagtggcaacaatagcgtc  20965200                               --------->ARR14(2)                           --------->LBD16                           --------->At5g28300                        --------->SPL7                       --------->MYB52(1)                       ------>MYB83                       ------>MYB46(1)                     ------->GAMYB                     <---------MYB59                <---------KAN4(2)            <------ZmHOX2a(2)  <---------ARR14(2)                     --------->ATHB12 --------->ANAC58 <-----------GT1       <---------ICU4             --------->ANAC55(2)              < --------->ANAC58 --------->MYB52(1)   <---------ATHB12       ------>ZmHOX2a(1)                     = -----TGA1 --------->AGP1 ----------->GT1                <-----------GT1                           -- --ANAC58  --------->ARR14(2)  ------->TEIL             <---------AHL20(2)                        <-- --ANAC58  <---------ARR14(2) <---------CCA1(2)        --------->AHL20(2)               ---------->DOF2   atcaagaaacccagatcgaataaccgaaccgtgaatctccaaacatttcggaatcgatttaatcctctcacatgatttgagagcgaaattgaaagtgaag  20965300        ----------->HVH21      <---------ANAC46      ----------->GT1      <---------ANAC58                                                                 --------->MYB59      <---------ANAC58                                                                 --------->DAG2    <------ZmHOX2a(1)           <-------GAMYB                                          <---------TOE2(3) ------ZmHOX2a(2)       --------->ANAC58                                         --------->ANAC58 ========================HOX2a_HOX2a--------->HSFB2a(2)                     --------->ANAC58 ------->ARR11(3)       --------->ANAC58     --------->GLK1(2)  >>>>>>>>>TBF1    --------->ANAC58 --- -------GLK1(1)   <------ZmHOX2a(1) <---------HSFB2a(2)   <------ZmHOX2a(1) --------->ANAC58      <--   agatcaggacgtgaaacagaggagagaagcattcggttatagaagagaatcgaatttagaggagaagaagaattggagaagccacgaataaggtagttcc  20965400                                                                             <------NtERF2                                                                             <-----------RAV1(2)                                                                            ------>NtERF2                                                                           <---------ANAC46                                                                          --------->ATERF1(1)                                                                          <------NtERF2  --------->ALFIN1                                                                          --------->RAP2.3(1)                                                                         <---------ATERF1(1)                                                                         <---------DEAR4(2)                                                                         <---------RAP2.3(1)                                                                         <---------ORA47(2)                                                                        <---------RAP2.3(2)  --------                                                                        <---------RAP2.3(3)  <-------                                                                        <---------DEAR3(1)  ---------               ------>ZmHOX2a(2)                                       --------->ATERF1(1)  <--------             --------->ARR14(2)                                   <---------ANAC46      <------ZmHOX2a(1)             <---------ARR14(2)                      ---------->DOF2  <---------ATERF1(1)<---------AtMYB61          <---------WOX13(1)                 <---------ANAC58   --------->MYB52(1)    --------->ALFIN1 ------>ARR14(2)                             <---------ANAC58  ----------->TGA1---------->DOF2<------ -------ARR14(2)                           <---------ANAC46    ----------->HVH21  --------->At4g35610   aatccgatgttgatggatcggaatcgaaatggtcgaagagaagttgagcgtgagataaagaaccagtgacggagacggcgcagaagcggaggaggtggtt  20965500                                                        <---------HSFC1(2)                                                        --------->HSFC1(2)                                                        <---------HSFB2a(1)                                                        --------->HSFB2a(1)                                                        <---------At4g35610                                                        <---------ZAT2                                                    --------->ANAC55(2)                                                    --------->ANAC46                                                   <---------LBD16                                                  --------->MYB52(1)                                                 <---------SPL7                              <---------ICU4    ------>ZmHOX2a(2)                              --------->YAB1  <---------AGP1 ->MYB55(2)                  --------->ICU4   ------->TEIL --MYB46(3)                  <---------YAB1   <---------ARR14(2) >ALFIN1                    <---------TOE2(3) --------->ARR14(2) -AtMYB61    <-----------RAV1(1)              --------->ARR11(3) -GAMYB <------ZmHOX2a(1)  --------->YAB1     <---------ARR11(3)    <-----------RAV1(1)         -----   gaagatggaaggatgatgttggagaccattgatgatgacatgagaatggatcttacggagcttcttcatactgttgcatccttgtagcattctcactatc  20965600                                         --------->MYB46(3)                                   ---------->DOF2                                >>>>>>>>>E2Fc                                >>>>>>>>>E2Fd                               ------>NtERF2                                        ----------->GT1                               --------->LBD16                                 <---------ICU4                              --------->ANAC58                     --------->YAB1  <---------TOE2(3)     <---------DAG2           --------->ANAC46                 <---------AHL20(2)  <---------TOE1(3)     <----------DOF2          --------->ANAC58                 --------->AHL20(2)  --------->MYB59 ---->ZAT6                   <---------LBD16------------>CBF  <---------ATHB12--------->ICU4   actctcgctttttcgcacatcgtctctctctcccgccaaaagaacgaccaatttgaatttgctaataaatcatatgagtaatatttaggttaatatttgt  20965700                                                                                         <------MYB46(1)                                                                                         <------MYB83                                                                                        --------->MYB46(2)                                                             --------->DAG2   ------->TEIL                                                         ------->GAMYB ------------>CBF --------->MYB59                     ---------->ID1                     --------->MYB46(3) <---------ATHB12           <---------MYB46(3)                    <---------AHL20(2)  --------->ZAT18   <---------MYB55(1)           <------MYB83  <----------DOF2        --------->AHL20(2) ------->MYC2       <---------MYB52(1)           <------MYB46(1)      ------------>CBF<---------AHL20(2) ------->MYC3     <---------ANAC58          <---------AtMYB61  <----------DOF2    <---------AHL20(1) <-------MYC2     <---------ANAC46         <--------P  <-----------GT1            --------->AHL20(1) <-------MYC3     <---------ANAC58  <-----------GT1   <-----------GT1       <---------AHL20(2)---------->DOF2<---------YAB1----------->GT1   gattttactaggttggtttttttttccctttcttttcaatagatttaaaatttattcaaccaaaaagcatgtgtacaatgaatgtttcgttaggttaatt  20965800                                                                         <---------ANAC58                       --------->AHL20(1)                                <---------ANAC58                       --------->ARR11(3)                              <---------YAB1                       <---------AHL20(1)                        <------MYB46(1)                   <------ZmHOX2a(1)                             <---------MYB46(3)                  ----------->GT1                              <---------WOX13(1)                 --------->MYB59                              <------------CBF         ----------->GT1 <------------CBF       <---------ANAC58 <------MYB83        <---------ARR11(3)                      <---------ANAC58 ----------->GT1        --------->ARR11(3)          --------->ZAT18          --------->ATHB12   tttgttagaagatgttaattaggaaaatattgaaggtgttcacaaaattttcttggtcaaaactgattggttaatgcttgaatactctcttgatcactct  20965900                                                                                    <---------AHL20(1)                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                                    --------->AHL20(1)                                                                                   --------->CCA1(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR11(3)                                                                       <---------AHL20(2)                                                                       <---------AHL20(1)                                                                       --------->AHL20(1)                          <---------ANAC58                             --------->ARR11(3)                          <---------ANAC46          <---------TOE2(3)  <---------ARR11(3)           ----------->GT1<---------ANAC58  --------->LBD16            --------->AHL20(2)   tctcacaacaacaaggtaactatgtgtttcttgtttcacaaaaacccgtagattaatgaaattagttttgaaatatattgatgagatatattttgcagaa  20966000                                                                                                    -                  <-----------GT1                                                                   -              <---------YAB1                                                                        <             <---------AHL20(2)                    --------->AHL20(2)                               <             --------->AHL20(2)                    <---------AHL20(2)                       <--------             --------->AHL20(1)                   --------->AHL20(2)                  <---------AHL20(2)             <---------AHL20(1)                <---------AHL20(2)                     <---------AHL20(1)           <---------YAB1                     <---------AHL20(1)                      --------->AHL20(2)          --------->AHL20(1)                  --------->AHL20(1)                      --------->ARR11(3)          --------->AHL20(2)                 <---------AHL20(2)                       <---------ARR11(3)         <---------ICU4                    --------->AHL20(2)                    <---------AHL20(2) <        --------->ICU4                     <---------AHL20(2)                    --------->AHL20(2) -     --------->AHL20(2)                  <---------AHL20(2)              <-----------GT1 <---------AHL20(2)     <---------AHL20(2)                  --------->AHL20(2)      <---------TOE2(3)    --------->AHL20(1)   taacaaaataaatattatattaacaatctctatatatacctatatatatatatttaataaacaaaataatgtttttaacaaattttaatatattatgagt  20966100  Previous    Next  AGI:  At3g56550.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17327.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76592.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20963875    to: 20965620    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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