Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <-----------GT1      <---------ICU4      --------->AHL20(2)      --------->YAB1      <--------HAHB4      -------->ATHB1                             <----------DOF2      --------->ATHB51                          <---------DAG2     --------->ICU4                          <-----------GT1     <---------YAB1                       --------------->AtSPL8     <---------ATHB51                  --------->AHL20(2)  <---------YAB1          <---------ZAT18 <---------ICU4 -------->YAB1            --------->ZAT18--------->ICU4            ---------->DOF2 -----AHL20(2)      <----------DOF2    --------->YAB1       ------->TEIL                  <---------- --->AHL20(2)  <---------MYB52(1)--------->TOE2(3)       <---------YAB1--------->ALFIN1<---------YAB1   tatcacaattattaactgttatcttttgtgctctagcttaataatatttaccttttttgatgaatatttcaaagtggtgctaatcggacattatagtact  20875100                                                                                   --------->YAB1                                                                                  <---------YAB1                                                                                --------->YAB1                                                                               <---------YAB1                                                                            --------->AHL20(2)                                <----------DOF2                          --------->AHL20(2)                          --------->WOX13(1)                            <---------AHL20(1)                        <---------ATHB12                                <---------ARR11(3)                       ------>MYB46(1)                                  --------->AHL20(1)                       ------>MYB83                        <---------AHL20(2)<---------AHL20(2) <---- -----AtSPL8          --------->WOX13(1)                  --------->AHL20(2)--------->ICU4     <-----   tacagatagaacctagacctagaccaatcaatctcttttcttccctcttgaaatttgatattaattcattccaaaatatttattatcataaaaactgatt  20875200                                                                                  <------ZmHOX2a(2)                                                                                 --------->AGP1                                                                                 <---------ARR11(3)                                                                              <---------HSFB2a(2)                                                                        ------>ZmHOX2a(1)           --------->MYB52(1)                                           =================HOX2a_HOX2a        --------->YAB1                   <----------DOF2         --------->ARR11(3) -----AHL20(2)                   <---------ANAC58                <---------ARR11(3) ----WOX13(1)                    <---------ANAC58            ---------->DOF2  --------->HSFB2a(2)   -   aatcggactctcataaccgatatatatagacaattgctagcatcttttttggagatggacacaaaaagacattcctgcttccagatcaatgtctctcaaa  20875300                                     ---------->DOF2                                    ------------------------>ANAC81                             ----------->GT1                            ------------------------>ANAC81  <---------ICU4       --------->ANAC58              ---------->DOF2<---------ANAC55(2)      -------- <---------YAB1<---------AtLEC2----------->GT1     <---------YAB1   ----------->RAV1(2)--------->YAB1 -------->TOE2(3)      --------->ANAC58     >>>>>>>>>TBF1         <-----------GT1   --------->YAB1   aacattattccatcgtttcatggccaagaaatggagaaaaaaagaagaagaatatcaaagtcacaaaattacctgagccatggctagaataagaagaaag  20875400                                                                   --------->YAB1                                                            <-------GAMYB                                                           <---------MYB46(3)                  <----------DOF2                          --------->MYB52(2)                    ----       <---------TOE2(3)          <---------MYB59    <---------ANAC46                     <----------       <---------TOE1(3)        ------->TEIL         <---------ANAC58               --------->At4g35610 -->DOF2  <----------DOF2<------ZmHOX2a(2)           <---------ANAC58               <---------At4g35610   gaaacgattaagctttgagcctttgagatcgatggaccgaatcagagaatgagatgcttgtttgttgaatgagaagaaatggtgtcttctgaatatttat  20875500                 <-------TEIL                --------->ARR14(1)                --------->CCA1(2)                --------->GLK1(2)               --------->ARR11(1)               <---------GLK1(2)               --------->ARR14(2)               <---------ARR14(2)        --------->ANAC58                                                             --------->DAG2        --------->ANAC58           <---------TOE2(3)               <---------At5g28300----------->GT1      ---------->DOF2             --------->DAG2               <<<<<<<<<<ATML1      ---------->DOF2  --------->ANAC58               ---------->DOF2             <---------ZAT18    <---------ATHB51  --------->ANAC58     *TSS   <---------ANAC58               --------->ZAT18------------>CBF <------- ----->YAB1  ----------->ARR10<---------ANAC58      <---------YAB1<-----------GT1--------->YAB1 -----AGL15  --------->ICU4   <---------ANAC46   --------->ICU4<<<<<<<<<<PDF2   <---------ATHB12   <-   agtaacgcaaaagcaaagattcggagaagttagcgtaaaggaaacgagaacattatgaattagtgcatttaccatatttccaataataaagtataaaggt  20875600               <-----------------AG               ----------------->AGL2               ----------------->AGL1               ----------->RAV1(2)               <-----------------AGL1        --------->MYB52(2)        ----------->GT1      <--------P ----------->HVH21    ----------->GT1    <------MYB83--------------->AGL15    <----------DOF2    <XXXXXXXXXXXXXXXXXXXXMIR864-5P       --------->TOE1(3)    <------MYB46(1) <---------ANAC46     --------->TOE2(3)        <---------------AtSPL8    <---------HSFB2a(1)----------->GT1 ------>MYB46(1)     ---------->DOF2 <------ZmHOX2a(1)  <---------bZIP60(2)------>MYB83   --------->MYB52(1) --TOE2(3)   <-----------GT1---------->DOF2      ----------------->AGL2 --------TOE2(3)<---------------AGL15<---------MYB59<---------MYB52(2)       --------->GLK1(1)   ttaggaaggttagttatacctgatgtggaaaaaagcttaccaactttaaaatccactaacagaaagtacaagtacaaagaattctatgaggtctccttgt  20875700                                    --------->AHL20(2)                                  --------->AHL20(2)                                 <---------ICU4                                --------->ICU4                              ------>MYB46(1)                            --------->TOE2(3)                   <---------------AGL15                            <---------MYB59                     <----------DOF2                            <---------MYB46(2)         ---------->DOF2                           --------->ANAC55(2)        --------->YAB1               --------------->AtSPL8                <---------ATHB12               --------------->AtSPL3              --------->WOX13(1)          <-----------RAV1(1) ------>MYB83       --------->WRKY18(1)    ------->MYC3           <---------ANAC55(2) ----------->GT1  --------------->AGL15        ------->TEIL    <-------MYC3      --------->WOX13(1)<---------AHL20(2)     <-----------------AGL3>>>>>>>>>>WRKY63   actacacatgttttgttgcagtaccaattacctaatttttatatatatggggtcaatcaaagtttacttttattagatagtagtatttgactatgaactt  20875800                        <---------AHL20(1)                        <---------AHL20(2)                                                      -----                        --------->AHL20(2)                                                     <-----                     <---------AHL20(1)                                                       <------                     --------->AHL20(2)                                                       -------                     --------->AHL20(1)           --------->YAB1          <---------AHL20(2) --------                     <---------AHL20(2)         --------->ARR11(3)      <---------YAB1       --------                 ------>ZmHOX2a(1)              <---------ARR11(3)     --------->AHL20(2)<---------AHL20(2)               --------->YAB1            ---------->DOF2    ---------->DOF2             --------->YAB1             <-----------GT1        <----------DOF2         --------->AHL20(2)   --------->WOX13(1)          <---------AHL20(2) <-----------GT1 <---------GLK1(2)         --------->AHL20(1)--------->AHL20(2)   agagaaaactatttttatcctaatattttattttcaagctttctaaagaatatcatgaacaataaaacacaaatattatatgtcaatctataaaaatatc  20875900        ------->MYC3                                               <---------ANAC58             <----        <-------MYC3                                               ----------->GT1              ----- ---->YAB1                      <---------MYB52(2)                 <---------ANAC58     <-----------RAV1(1) ----YAB1--------->ALFIN1       <---------MYB59      ----------->HVH21                 <---------TOE2(3) ---ARR11(3)              --------->At4g35610      --------->ANAC55(2)         <---------ANAC55(2)  < -->ARR11(3)         --------->YAB1                <---------At4g35610        <-------TEIL   -------- ->RVE1(1)        <---------AtLEC2        <---------AHL20(2)       <---------ANAC46  <---------AHL20(2) ->CCA1(1)  <---------ANAC46--------->RAP2.6(2)<----------DOF2  --------->ALFIN1   --------->YAB1  <-   atattatacatgtggagtttgaatggtaagccgaactaactcattttatctttaggtgactaggtagtggggtgtattgatacataaataatgttgtcct  20876000  Previous    Next  AGI:  At3g56240.1    Description:  CCH (COPPER CHAPERONE). similar to ATX1, metal ion binding [Arabidopsis thaliana] (TAIR:AT1G66240.1); similar to copper chaperone [Populus alba x Populus tremula var. glandulosa] (GB:AAT12488.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) Range:  from: 20874236    to: 20875523    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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