Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ANAC58     --------->ANAC58 ------->DOF2                                       <-----------GT1 --->ANAC58                                        --------->KAN4(2)             ---------->ID1 --->ANAC58       --------->TOE2(3)               <---------ICU4               <---------AtMYB61 -->ZAT18      <-----------GT1    <-----------GT1 <---------KAN4(1)     <---------MYB52(1) >ZAT2     --------->YAB1 <----------DOF2        <---------YAB1    <-----------GT1 -ZAT2  <----------DOF2---------->ID1       <----------DOF2        --------->MYB52(1)   caaaggcaagcttttataaacctttgtgcttttcatttacaattttctttgattattccttctgatgtttaacggtttgttttggtgttttgaattcagt  20855200                                                                                            ---------                                                                                            <--------                                                                                           <---------ATHB12                              --------->ALFIN1                                             --------->ICU4                             <----------DOF2                                      --------->ALFIN1                            <---------ANAC58                                     ------->MYC3   -----                            <---------ANAC58                                  --------->MYB52(1)-----                            <---------ANAC46          --------->ANAC58      --------->MYB46(3)  <----                       <-------GAMYB                  --------->ANAC58      <---------MYB52(2) <-----                     --------->ZAT18                ---------->DOF2      <----------ID1  --------->WOX13(1)                 --------->DAG2       <---------At4g35610             ---------->DOF2  <------NtERF2                ---------->DOF2 <---------ANAC46 --------->LBD16 --------->ALFIN1<-------MYC3 <------   gggaaaatgaggctaggcaaaagcgcgttggcttgtgggcatcttctaatccagagaagccatgggagtggagaaagaacaaacgtggaggcaattaatg  20855300 >AHL20(2)                                                             ------>ZmHOX2a(2) -AHL20(2)                                               ---------->DOF2<-----------RAV1(1) --->HAHB4                                    <---------ICU4          <---------At4g35610 ---->YAB1                                   <---------YAB1  --------->ARR11(3) -----ICU4 --------->AHL20(2)                --------->ICU4  <---------ARR11(3)     --------->YAB1 ----YAB1 <---------ATHB12                <---------YAB1<---------AHL20(2)      <---------YAB1 ---TOE2(3)--------->YAB1             --------->AHL20(2)--------->AHL20(2) <---------MYB46(3)       -   ataacaaaaccaataaaaacaacaatacaatactattcgattatatgattattgtgaattaaagaacttgtgatctgttgttgtaattgtaagagaagta  20855400                          <---------AHL20(2)                                        <---------ANAC58                    --------->ANAC58                                                <---------ANAC58                    --------->ANAC55(2)               ------->TEIL          --------->MYB52(2)          --------->ANAC55(2)                    <----------DOF2        --------->At4g35610 ------>TEIL        --------->ANAC58     <---------GLK1(2)              <---------At4g35610        <-   tgtatatgttttatgtattgacaagtatttttttggcaatagagaatttctctttgaaccttgagacagaagttagcttagttgtttcgtttctaaatat  20855500                                                                      <---------ATHB12                                                                     ------>MYB83                                    <-------GAMYB                    ------>MYB46(1)             <---------YAB1        <---------MYB46(3)     ----------->GT1          <---------AHL20(2)   --------->ATHB12          --------->DAG2   ------------>CBF   <-------TEIL              --------->GLK1(2)          ---------->DOF2  <-----------GT1 --------------AtSPL8    <-----------GT1      ---------->DOF2     ------------>CBF   aagggtacatagtttatttttggggtttaacaatctttggttgagaataaaagtctgaaaaagtaaaaaccaatcttacaatttcaaatttgtttttagt  20855600            <---------TOE2(3)                   --------->YAB1      --------->ZAT18   <------------CBF                           *TSS       <------ZmHOX2a(1)              --------->YAB1 --------->AHL20(1)                  <---------YAB1   <------ZmHOX2a(1)              <----------DOF2 --------->ARR11(3)                --------->YAB1  <-----------RAV1(2) ----------------->AGL3 <---------AHL20(1)               <---------YAB1<---------ICU4<---------YAB1 ---------->DOF2   <-----   tgatatattgttttaagaaaatgtgaagaggtgtttttgataattcttcatcatcaggaggattatcaagggctctaaataaagagcctttcatagtctt  20855700                                                                                  --------->LBD16                                                                                 --------->ANAC46                                                                                 --------->LBD16                                                                                --------->TOE1(2)                                                                                <---------LBD16                                                                              <------ZmHOX2a(2)                                                                             --------->ARR14(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(3)                                                                             <---------ARR11(3)                                                                             <---------ARR14(2)                                                                             --------->ARR11(3)                                         ------------------------>ANAC81    --------->GLK1(1)                                       ---------->DOF2                    <------ZmHOX2a(1)<---------ZAT14                             <----------DOF2                  <---------GLK1(2)------>ZmHOX2a(2)         <<<<<<<<<TBF1 --------->HSFB2a(2)               --------->MYB52(1) <---------GLK1(1) -----DOF2     ---------->ID1<---------DAG2         --------->AHL20(2)    ===========================   ttgcaatcttcttcttcgtcttcttcttgaactttattcgaaaatgccgaagaataaaaaaacagaatggcaagtaggagatcccgcgataagcgtagtg  20855800                               <----------DOF2                              ------>ZmHOX2a(2)                            --------->ARR11(3)                            <---------ARR11(3)                            --------->ARR14(2)                                                    <--                            <---------ARR14(2)                                                   <---                            <---------AGP1                                                       ----                            ------->TEIL                                                         ----                         <---------ATHB12                               --------->YAB1           ----                       --------->MYB52(1)                           <---------YAB1          ---------                    --------->ANAC58                  <---------GLK1(2)<---------YAB1  ------>ZmHOX2a(2)  <------ZmHOX2a(2) --------->ANAC58          --------->DAG2       <---------GLK1(2)   ============== ========HOX2a_HOX2a--------->ANAC46         ---------->DOF2     --------->ICU4--------->ALFIN1 <----   agcgatcaattctgtaatccatacccaatggatcttttggtgaagagaaaagttcagaatttttctaaagattattatgaagtgtttgatccaagtggga  20855900      ------>ZmHOX2a(1) --------->At4g35610                                 --------->ANAC55(2) <---------At4g35610                                 <---------ANAC58                         ------- -------At4g35610                      --------->At5g28300                                    <------ ------ARR14(2)                     <---------At5g28300       <---------ZAT2           <-----------HVH21 ------>TaMYB80             <---------ANAC46     --------->CCA1(2)        --------->ARR14(2) -------- ----->ARR14(2)        --------->ZAT2 --------->TOE2(3)     <-----------RAV1(2)       <---------ANAC58 ----->GLK1(2)        --------->ANAC58------->GAMYB  <---------ANAC58 <-----------GT1 <---------ANAC58 >ALFIN1              --------->ANAC58--------->TOE1(3)    ==========================HOX2a_HOX2a ============HOX2a_HOX2a  --------->ALFIN1---------->DOF2  ------>ZmHOX2a(2)  ------>ZmHOX2a(1) -----GLK1(1)   <---------WOX13(1) <-----------GT1 <---------YAB1  --------->ARR14(2) <----------ID1   atctgctcctacaaattgatggacaagcttgggggtttaaccgtaaaagagttatgcgtgatccagccggtttcacaatcctctcaatgcgtcaaaaggt  20856000                                                                <---------WOX13(1)                                                <---------------AGL15                                                --------------->AGL15                                                =====================================================                     ------->GAMYB             <-----------------AGL2           <-------GAMYB                    <---------MYB52(2)         <---------ANAC58>>>>>>>>>ARR1   <---------ANAC46        <---------AHL20(2)          <---------ICU4            --------->ATHB12 <---------ANAC58 ---->GT1<---------AHL20(2)       <---------AHL20(2)     <---------ANAC46  <---------ANAC58 ---------AtSPL8    --------->MYB46(3)         <---------ANAC58>>>>>>>>>ARR2   <---------ANAC58 ->DAG2 --------->AHL20(2) <-------TEIL     <----------DOF2  <---------YAB1<---------ANAC58  --------   tacaaaacattttaatttttcaacaaacatacatataaaaatgactctttcttgaaatggtgtatgattgtttagggacttgcgttgaagaacaagtggg  20856100  Previous    Next  AGI:  At3g56170.1    Description:  CAN (CA-2+ DEPENDENT NUCLEASE); nuclease. similar to Ca(2+)-dependent nuclease, putative [Arabidopsis thaliana] (TAIR:AT2G40410.2); similar to Ca(2+)-dependent DNase [Populus tomentosa] (GB:AAX21543.1); contains InterPro domain Staphylococcal nuclease (SNase-like), OB-fold; (InterPro:IPR016071); contains InterPro domain Staphylococcal nuclease (SNase-like); (InterPro:IPR006021) Range:  from: 20853556    to: 20855455    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g56180.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10986.1); similar to unknown [Picea sitchensis] (GB:ABK21409.1); contains InterPro domain Protein of unknown function DUF567 (InterPro:IPR007612) Range:  from: 20855646    to: 20856671    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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