Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   --                                                                              --------->AtLEC2     <-                                                                          <---------ATHB12  =========                                                                          <------ZmHOX2a(2) <------ZmHOX2a(1)                                            ----------->GT1         <-----------GT1       <---------TOE2(3)                               --------->TOE1(3)          --------->ALFIN1=========================HOX2a_HOX2a ---------->RAV1(1) <---------DAG2---------->DOF2         --------------->AtSPL8         --------->YAB1 -->ANAC46    <-----------GT1  --------->TOE2(3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) =========   aacaacaattgtgagattaccactctatgagcaccttaaagtaaactagataaaacccaagtggtactattttccgatcaatgcagacgaataaggattc  20818700          ----------->HVH21         ------>ZmHOX2a(2)        <------ZmHOX2a(2)        --------->CCA1(2)       <---------AGP1       <-----------ARR10       --------->AGP1       --------->ARR11(3)       <---------ARR14(2)       <---------ARR11(3)       --------->ARR14(2)      <---------CCA1(2) ------->ATHB1    --------->ARR14(2) -------->ATHB51  <---------GLK1(2) -------->AHL20(2)--------->ARR11(3) --------ATHB51   <---------ARR11(3)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------->ICU4     <---------ARR14(2)      --------->YAB1      <-----------HVH21                 ----- --------ATHB12 ----------->ARR10--------->YAB1           <---------AHL20(2)                 -------- ==============HOX2a_HOX2a       --------->TOE2(3)     --------->YAB1--------->MYB46(3)     --------- ===============HOX2a_HOX2a     ----------->GT1       --------->AHL20(2)                  ---------->DOF2   aattattcagatctgactcagattttctcatacaatgttaaaaatcataaaaccgattaataaatgtcccatccatcgaaattgtcgataagaaaagata  20818800                                                                                             --------                                                                                             <-------                                                                                        --------->ANAC55(2)                                                    <---------ZAT18                <---------YAB1                                               --------->ARR11(3)                <-----------GT1   --                                               <---------ARR11(3)         <---------ANAC58--------->DOF5.7(2)                                               --------->ARR14(2)         <---------ANAC58<---------MYB52(1)                                      <------MYB46(1)            --------->ZAT2 <---------AHL20(2) --  <---------YAB1                      <------MYB83  --------->ZAT18   <-----------RAV1(2)--------->TOE2(3) ---->AHL20(2)             --------->TOE2(3)   <---------ARR14(2)<---------ZAT2 <---------YAB1 <xxxxx --->GT1                   --------->TOE1(3)  <------ZmHOX2a(1)  --------->At4g35610    --------->ANAC46 -->GT1                 --------->ARR14(2)  <---------TOE2(3)    <---------At4g35610  <-----------GT1   aattcttataacacagagatttatcgaaacctcaaatggatggttttaggatattgcacaaatattgagctcgcaggcgttttttattatacgttatctg  20818900                               --------->ANAC46                               <----------ID1                               --------->ANAC58                           ---------->DOF2 ->At4g35610           ----------->GT1 --At4g35610         --------->ANAC46                      --------->YAB1 ------->ANAC58    <-----------GT1                   ----------->GT1               <-------TEIL ------->ANAC58<----------DOF2 --------->ANAC58      --------->ANAC58           <---------ANAC58 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ANAC58           <---------ANAC58  ---   caagccttcgatatgtgcttttaacgcgataaaacgcaaaatcgaagaaatagagaagcaaaaatcatcgaaaacatgaattgggttcaccgaaatgaag  20819000                                                         --------->RAP2.6(3)                                                        <-----------GT1                                                        --------->MYB52(1)                                                   --------->AHL20(2)         --------->ANAC58                          <---------AHL20(2)         --------->ANAC58                      <------ZmHOX2a(1)                    ------>NtERF2 <----------DOF2      <-------TEIL           <---------TOE1(3)                  --------->ALFIN1 ---->TEIL     --------->TOE2(3)          ----------->HVH21                   <----------DOF2   tacctttgcagaggcaatctcaaattcgtcttctcaaggagcgagtgaaggatttatataacggctcaatggcacaagggctttgggggctagggtttta  20819100                                  ------>ZmHOX2a(2)            <-----------GT1                                 <------ZmHOX2a(2)             <---------AHL20(2)                                <---------ARR11(3)         <---------AHL20(2)                                <---------ARR14(2)        <---------AHL20(2)                                --------->ARR11(3)    <---------DAG2   <-----------TGA1          <---------WOX13(1)    --------->ARR14(2)    <----------DOF2  <-----------HVH21         >>>>>>>>>ARR2          --------->AGP1--------->ARR14(2)      --------->ANAC46        --------->ATHB12       *TSS           <---------ARR14(2)    <---------At5g28300          <---       <---------YAB1          --------->GLK1(1)   ---------->ID1<---------ANAC58       --------->DAG2    <----------DOF2            <---------GLK1(1) <-----------GT1 <---------ANAC58      ---------->DOF2   ctagggcttttgattgtttgagttgagacagagagatctgttttctcggttttgcccttttttattttcttaccgtcacagtctcatcaaaaagcccata  20819200                                    <---------YAB1                 ------->GAMYB                     -------->P     <---------AHL20(2)            --------->MYB46(3)                    <-----------GT1<---------AHL20(1)             <---------MYB52(2)           ------                 --------->ZAT6    --------->AHL20(2)          --------->MYB46(3)              <-----               <---------AHL20(2)  --------->AHL20(1)      <---------MYB59                   --------             <---------YAB1       --------->YAB1          --------->ANAC58              <---------ANAC58           <---------ICU4    --------->ANAC46             --------->ANAC58              <---------ANAC46           --------->ATHB51  --------->ANAC58 <-------GAMYB--------->MYB46(3)           <---------ANAC58          --------->ICU4     --------->ANAC58<---------ANAC58------>MYB46(1)           <-------TEIL          <---------YAB1 ------>MYB46(1)     <---------ANAC46------>MYB83     <<<<<<<<<<<<<<<<<LFY ------YAB1<--------HAHB4------>MYB83        <---------ANAC58----------->RAV1(1)    <---------MYB46(3)   tgattcaggcccattattaaaactaccatccaagaaatataatcgtttcgttggacttggacccaacaacaaaccccatttcacattggttcgtgtgagc  20819300       <----------DOF2  ---------->DOF2                           --------->TOE2(3) --------->AHL20(2)                         --------->YAB1       --------->TOE2(3)            ------- <---------AHL20(2)                <-----------RAV1(1)        ----------->RAV1(1)         <----------DOF2 --->At4g35610--------->ANAC58   <---------ANAC46       <----------DOF2                  <---------ANAC58 ----At4g35610--------->ANAC58   <---------ANAC58    <---------ARR11(3)            <---------TOE2(3)< ->ZAT18  --------->YAB1         <---------ANAC58    --------->ARR11(3)--------->TOE2(3) <---------ANAC58   taattaaagctttaataagctatctaatttcaatctcgtgttgctatcttaataagctctttaacaacataaatctcaatgttttgagattgctttcaaa  20819400                                                                                               <-----                                                                                               <-----                                                                                               ======                                                                                               ------                                                              <---------AHL20(2)               ------                                                             <---------AHL20(2)             <--------                                                             --------->AHL20(2)            <------ZmHOX2a(1)                                                        ------>ZmHOX2a(2)                xxxxxxxxxxxx                                                       <------ZmHOX2a(2)            --------->AHL20(2)                                                      <---------AGP1            <---------AHL20(2)                                                      --------->ARR11(3)        --------->AHL20(2)                                                      <---------ARR11(3)        <---------AHL20(1)                                                 <---------ANAC58               --------->AHL20(1)                                 <---------AHL20(2)   --------->AGP1           --------->AHL20(2)              <---------ICU4   --------->AHL20(2)<---------ANAC46              <---------AHL20(2) --->DOF2    <-------TEIL      <---------AHL20(2)<---------ANAC58     =============================== -----------GT1      --------->ANAC46   ------->TEIL <---------CCA1(2)<----------DOF2  --------->TOE1(2)   gttaactatttgatgttcattacaagagactatatatatatgaacctagttgcttagatctaattaaatgagctttggaaaataaattacataggacact  20819500     <---------LBD16  <----------DOF2  <---------DAG2                  <---------YAB1 ----TGA1a               ---------->ID1 ----O2            --------->ARR11(3)                                           xxxxxxxxxxxxxxxx>smallRNA(i) ============bZIP_DOF<---------ICU4  ------->TEIL                           <---------ANAC58 --->TGA1a        --------->YAB1--------->YAB1                  --------->ARR14(2)           <xxxxxxx --->O2    --------->ATHB12 --------->ICU4  --------->YAB1      <---------GLK1(2)         --------->MYB52(2) -ZAT18  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2)           <---------ANAC58 <------- xxxxxxxxxxx>smallRNA(se3)----------------->AGL1                <---------ARR14(2)    <---------ZAT6 ====bZIP_DOF  --------->YAB1  <---------YAB1  <---------AHL20(2)           <---------ANAC46 <xxxxxxx   tgggcttttcggatgatttataatcttggccttattatgaatgctctaataaaacaagaagaaatggattctctggtcgcttggacttgtgttagtggtt  20819600  Previous    Next  AGI:  At3g56070.1    Description:  ROC2 (rotamase CyP 2); peptidyl-prolyl cis-trans isomerase. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-3 (CYP19-3) [Arabidopsis Thaliana] (GB:Q38867;GB:Q38901;GB:Q9LYN4); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to unknown [Populus trichocarpa] (GB:ABK93248.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 20817728    to: 20819131    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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