Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <xxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     <---------MYB46(3)                                                                                    xxxxxxxxxxxxxxxxx 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                                          <---------AHL20(2)                  xxxxxxxxxxxxxxxxxxxxxx                                           --------->AHL20(1)                  xxxxxxxxxxxxxxxxxxxxxx                                     --------->At5g28300                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    ----------->GT1                           xxxxxxxxxxxxxxxxxxxxxxx                                  --------->SPL7                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                ----------->HVH21                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <---------SPL7                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              --------->ANAC46                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->ANAC55(2)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <---------ANAC55(2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <---------O2 --------->AHL20(2)             ----------->GT1  ------->TEIL                              --------->O2--------->AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------GT1     <---------LBD16<---------ICU4             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ICU4        --------->MYB52(1)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----AHL20(2)         --------->AHL20(2) <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ->TOE2(3) <---------YAB1   <-------------DYT1 <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aattttaaaaattactattttttaaaaaaatcacgggacggtaaaaaaattacagaacgagttctattttggaattgagttatatggtggatgtatttga  20799200                                                                                                  <--                                                                                                -----                                                                                             --------                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                      <xxxxxxxxxxxxxx                                                                                     <-------TEIL<---                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx          <---------AHL20(2)                                                        xxxxxxxxxxxxxxxxx         --------->AHL20(2)                                                         <xxxxxxxxxxxxxxxx      --------->YAB1                                                               --------->ARR14(2) xxxxxxxxsmallRNA(s2)                                                              <---------GLK1(2) xxxxxxx>smallRNA(si3)                                                             <xxxxxxxxxxxxxxxxx xxxxx>smallRNA(le3)                                                               <xxxxxxxxxxxxxxxxx xxxxxx>smallRNA(i2)                                                               <---------ARR14(2) xxxx>smallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxx xxxx>smallRNA(s2)                                                                <xxxxxxxxxxxxxxxxxx xxx>smallRNA(se3)                                                                xxxxxxxxxxxxxxxx>smallRNA(s) xxx>smallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i) xxx>smallRNA(s2)                                                                 xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxx xxxx>smallRNA(i2)                                                               <xxxxxxxxxxxxxxxxxxx xxx>smallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxx xxx>smallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxx xxxx>smallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxx x>smallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >smallRNA(si3)                                                           xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(se3)          <---------AHL20(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xx>smallRNA(le3)         <---------YAB1                                 --------->YAB1<xxxxxxxxxxxxx xxx>smallRNA(le3)     <---------AHL20(2)                                xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(si3)     <---------YAB1          ----------->GT1           <---------ICU4<xxxxxxxxxxxxx >MIR862-3P         --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxx>smallRNA(i) x>smallRNA(si3)    <---------AHL20(1)  <---------YAB1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) x>smallRNA(le3)    <---------ARR11(3) --------->AHL20(2)               xxxxxxxxxxxxxxxx>smallRNA(i)x >smallRNA(si3)     --------->AHL20(1) <---------AHL20(2)          <-----------GT1<xxxxxxxxxxxxxxxxxx   atcaatatttataaaatttcaaaatattattaatatgctgttttaataggggttaaaacttcagttttttaacaattatctcatggattcgtggtatacc  20799300       --------->YAB1 <---------ANAC55(2) --------->ANAC55(2) -------MYB52(1) ------>GT1  --------->YAB1 ---->MYB.PH3(1) xxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(i2) ----GAMYB   --------->AHL20(2) xxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(se3) xxxxxxxsmallRNA(se3) xxxxsmallRNA(l2) xxxxxxxsmallRNA(s2) xxxxx>smallRNA(se3) xxxxxxxsmallRNA(l2)                            <---------AHL20(2) xxxxxsmallRNA(fl3)                            --------->AHL20(1) xxxxxxsmallRNA(s2)                            <---------AHL20(1) xxxxxsmallRNA(fl3)                         --------->YAB1 xxxxsmallRNA(si3)                        <---------AHL20(2) xxxxsmallRNA(se3)                <---------AHL20(1)                        <----------DOF2         < xxxxsmallRNA(fl3)                --------->AHL20(2)                       --------->TOE2(3)       -- xxxsmallRNA(s2)                  --------->AHL20(1)                    <-----------GT1         ----- xxxsmallRNA(si3)                <---------AHL20(2)  ----------->GT1--------->AHL20(1)          <---- xsmallRNA(se3)      --------->At5g28300  --------->AHL20(2)        <---------AHL20(1)         <----- xxxxxxxxxxsmallRNA(fl3)     <---------AHL20(2)--------->AHL20(2) --------->AHL20(1)          <------ xxxxxxxxxxsmallRNA(s2)      --------->AHL20(2)<---------AHL20(2) <---------AHL20(1)         -------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->YAB1      <---------AHL20(2)       <---------AHL20(2) xxxxsmallRNA(i2)   ----------->GT1  <---------AHL20(2)      --------->AHL20(2)      --------->AHL20(2)   gttacttaataacaattataaactgtaaaatataaatattttataaaaataaaatttgtaaattttaatatatattacctttaaaaaataaatcgttccg  20799400          <-------GAMYB          ========================================MYC_MYB        --------->LBD16        <---------TOE1(2)      <---------LBD16  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->At5g28300 ---->LBD16         ----------->GT1     <---------O2 -----LBD16     --------->GLK1(2)       --------->TGA1a                                  <----------DOF2 ----ANAC46     --------->ARR11(3)      --------->O2                     <---------YAB1  <---------DAG2 ---LBD16----------->GT1     --------->At5g28300                <---------------------WRI1 ->SPL7<---------ANAC46     ----------->GT1 --------->WOX13(1) <-----------GT1   <-----------HVH21   cggtatatcgcgggttaaaatctagtaaaactgtaaaatttcacgtctatcagttacaaactattgtacgatattatcaaactggtcagaactttttatg  20799500                                                                                 ------->MYC4                                                                                 <-------MYC4                                                                                 ------->MYC2                                                                                 ------->PIF5                                                                                 <-------PIF4                                                                                 ------->PIF4                                                                                 <-------MYC3                                                                                 <-------PIF5                                                                                 ------->MYC3                                                                                 <-------MYC2                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58                                                                                ================bZIP_DOF                                                                                --------->O2                                                                                <---------O2                                                                                <---------bZIP60(2)                                                                                <---------TGA1a                                                                                --------->TGA1a                                                                                <---------ANAC55(2)                                                                                ================bZIP_DOF                                                                                --------->ANAC55(2)                                                                         <-------GAMYB                                                                        <---------MYB46(3)                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                   ------>ZmHOX2a(2)                                                           ===============================bZIP_DOF                                                           ---------->DOF2  <-----------HVH21                                                         <---------YAB1--------->ALFIN1                <---------ANAC58               ----------->GT1    <------ZmHOX2a(2)                <---------ANAC58      <----------DOF2  --------->YAB1<---------ANAC46          ------                <-------GAMYB   <-----------GT1<----------ID1    --------->ARR11(3)  <----------DOF2      --------->YAB1<---------ANAC46 <---------ICU4    --------->AHL20(2)=================MYC_MYB----   taaaacagtcatagtttgggttgtgttttgcaattttcatcttttcaatgggtcaaattataaaagagatcgcgtggttgtcacgtgctttaagagcgag  20799600                                            <---------ANAC46                                         --------->GLK1(2)                                 <---------ARR14(2)                                          <-------                              ------------>CBF                                          <----------DOF2        <---------YAB1       --------->ANAC58                                    <---------ARR14(2)     --------->WRKY38(1)     --------->ANAC58    *TSS                            --------->GLK1(2)  <---------ANAC46   <---------At4g35610<---------GLK1(2)        --------->AtMYB61  <---------ANAC58 --->ALFIN1       ---------->DOF2--------->ARR14(2)              ----------->RAV1(1)<---------ANAC58 ----->ALFIN1    <---------REM1(1)<---------ATHB12  <---------At4g35610          --------->ARR14(2)--   tgggacgttgatcatcgagatgaagcagagaacccaatcttcgattctgtgtttagcttcttcactaccacacagaaacagagtttccgtctttcatctt  20799700                                                       <------NtERF2                                                      <---------ATERF1(1)                                                      ------>NtERF2                                                     <---------DEAR3(1)                                                     --------->DEAR3(1)                                                     --------->ATERF1(2)       --------->ANAC46                              <---------ATERF1(2)       <---------ANAC58                             <---------LBD16       <---------ANAC58      <-----------GT1       ------->GAMYB    <-------MYC3         ------>MYB46(1)          --------->DEAR3(1)       --------->GLK1(2)     <---    ------->MYC3         ------>MYB83             --------->ANAC46   <---------MYB52(1)       ------- --At4g35610           <---------MYB59 --------------------->WRI1   --------->LBD16        <--------- ---->ZmHOX2a(1)       --------->TOE2(3)<---------MYB52(1)        <---------LBD16        ------>ZmHOX2a(1)   cctccatatgcgtcgctcttaaaaacctaattcacaatgtccgtcgttctcaacgccggcttcagttctccggtaagaatttgctctcttcctctttgat  20799800                                                    <---------YAB1                                                    <---------AHL20(2)                                                  --------------->AGL15                                                  <----------DOF2                                               <---------ALFIN1                                              --------->MYB46(3)                                            --------->ARR14(2)                                         --------->HSFB2a(2) --------GT1       --------->YAB1        <---------HSFB2a(2) -->YAB1 --------->GLK1(2)     <---------AHL20(2)<-----------------AGL3     <----------DOF2        <- -DOF2  <---------GLK1(2)  ------>ZmHOX2a(1)<---------ARR14(2)       --------->DOF5.7(2)      -------   aaccatataagattcttctactcatactcctgtataatttgctccagaaccactttaattgggattgaatcgtttactcttttgtgactgaaattcgaaa  20799900                                                                                          ------->TEIL                                                 --------->ATHB12                     ---------------                                          <------MYB46(1)                             ---------------                                          <------MYB83                             <----------DOF2                                        <---------WOX13(1)                        <---------ANAC58                                      --------->ATHB12 ---------->ID1             <---------ANAC58 ---------DOF2              <---------ANAC46   ------>ZmHOX2a(1)    ----------->GT1<---------DAG2 --->DOF2          ------->TEIL     <---------WOX13(1) <---------CCA1(2)     --------->ATHB12   gctttctcgtttcccttgatgaacttggttttgtagagattgattggtccttgattcgtctctctagagtttgaaaaaaccattgctttatgtacttctt  20800000                             --------->LBD16                             <---------At4g35610                                          <---------ZAT6                             --------->At4g35610       <----------DOF2                    -----------                      <---------AHL20(2)     --------->ARR11(3)              --------->bZIP60(1) <-------TEIL         <---------YAB1         --------->GLK1(2)               <---------bZIP60(1) >AtSPL3              --------->AHL20(2)     <-----------ARR10            <------ZmHOX2a(2) >AtSPL8       <----------DOF2               <---------ARR11(3)         --------->At4g35610   -------   cgatgcataaaccaatgctttcatataattccgctgatattaacaaaaatcttctctctttgaagcttcaaaacagatcacatcatgttatacagttaaa  20800100  Previous    Next  AGI:  At3g56010.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN79918.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41393.1) Range:  from: 20799649    to: 20800903    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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