Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------At4g35610                                                  --------->At4g35610                                                  <------NtERF2                                                 <---------DEAR3(2)                                         ------>NtERF2                                <---------DAG2  <---------RAP2.6(2)                             <---------ZAT18   --------->RAP2.6(3) <---------TOE1(2)                       --------->YAB1   --------->ANAC58  --------->ARR14(2)                   --------->YAB1<----------DOF2<---------DEAR3(1) <---------TOE2(2)    --------->YAB1<---------ATHB12      --------->ANAC46  <---------ARR14(2) ------->GT1    --------->WOX13(1)      --------->ANAC58 <---------CCA1(2)   agataatagtagtcgctccaatcaagaatagcacccttttctacgcctagtcggcttccatatccctcgtaagttttcggcgaattagcatgcatatttt  20779900                                             <------MYB46(1)                                             <------MYB83               <---------MYB46(3)                                          <---------ANAC58             --------->ALFIN1                                     <----------DOF2  <---------ZAT2  --------->LBD16                                    <---------ANAC58  --------->At4g35610                                    <---------ANAC58  --------->ZAT2 <---------ANAC46                     <---------GLK1(1)    <---------ANAC58  <------ZmHOX2a(1)       ----------->GT1                ---------->DOF2<-----------RAV1(1)    <---------At4g35610      <---------ALFIN1   tgagttccatggggagattaaagaattctctccatgttgctttagcttggtccatgagctgaggactcatcccgtggttcaccacttggaaaaatcccaa  20780000                                                           --------->ARR14(2)             <---------MYB46(3)                                                      <---------ANAC58                   --------->ALFIN1                                                  --------->ETT(2)                       <---------AtMYB61                                               <------MYB83<---------ARR14(2)          <------MYB46(1)                                               <------MYB46(1)                         <------MYB83                                              --------->MYB111(1)                     <---------AtMYB61                 --------->GLK1(1)            --------->MYB46(2)    <---------MYB59   --------->ALFIN1              <---------TOE2(3)               --------->MYB59 --------->ANAC46  <---------ANAC46          <----------DOF2                 <---------ZAT6 --------->REM1(2)    <--------ATHB1      --------->ANAC46                --------->REM1(2)--------->LBD16        --------->YAB1      --------->ANAC58             <---------ANAC46   <---------ANAC58       <---------ATHB12<-------      --------->ANAC58             <---------ANAC58   <---------ANAC46       --------->ICU4 <--------   <---------REM1(2)               <---------ANAC58<---------SPL7------>NtERF2--------->ATHB12   ttctctacaagcctttgagatttcatcaagcgttttggcttgtagagttaggtcgtccgtgtataggcgacctaagtcaatgatggggatggtggtggtc  20780100                                                                                  <----------DOF2                                                    <---------bZIP60(2)          <---------ANAC58                                                    <---------ANAC58             <---------ANAC46                                                    <---------REM1(1)      <---------TOE2(2)                                                    <---------ANAC58      --------->LBD16          --------->MYB52(2)                     ----------->HVH21       <---------TOE1(1)   --------      <---------YAB1                           <---------ANAC58         <------NtERF2      <---------TOE2(3)      <---------ANAC46                         <---------ANAC58<------MYB46(1)   <---------ANAC58  <-  <-------GAMYB   <---------ANAC46--------->At4g35610          <------MYB83<---------TOE1(2) <------ZmHOX2a(1) --MYB46(3)<-------GAMYB <---------YAB1  --------->CCA1(2)    --------->MYB59 <--------P   <---------TOE1(3) -AtMYB61 <---------MYB46(3)      <---------At4g35610         <---------------AtSPL3   <---------At4g35610   tgagggttgtgtttgttgtgaggggttatgtttggacgctgagatagaggcttgacgtagcgatttggtatggctccgaggttgctttcagataaggatt  20780200                                              <------MYB46(1)                                              <------MYB83                                              --------->MYB52(2)                                              --------->MYB55(2)                                              <---------MYB46(3)                                             <---------AtMYB61                                            <---------MYB52(1)                                           <-------GAMYB                                          <---------ANAC46                                          <---------ANAC58                                <---------ARR14(3)                                <---------ARR11(3)                                          ---------                                --------->ARR14(2)                                         <-------GAMYB                                <---------ARR14(2)                                        <---------MYB46(3)                 --------->ANAC58         <---------ANAC58                         <------ZmHOX2a(1)                 --------->ANAC58    <---------ICU4                               ----------->HVH21  --------->ANAC58              --------->ARR11(3)                                <---------SPL7 <---  --------->ANAC58              --------->ARR14(3)       ---------->DOF2----------->HVH21 <------MYB83  --------->ANAC55(2)         ----------->ARR10<-------GAMYB            <---------REM1(1) <------MYB46(1) ->ATHB12      <-----------RAV1(2)  <-------TEIL    --------------->AGL15     --------->ALFIN1 <----- --------REM1(2) --------->ANAC46<---------RVE1(1)  <----------DOF2   --------->CCA1(2)  <---------AtMYB61   ggacacggactataggctcaggccagtcttggaagatattcatggcgttggttacttttaaaaggctctaagagatgaagggggaggacgggaggttgag  20780300                                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           --------->AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------HSFB2a(2)   <---------AHL20(2)            --------->ANAC58                         ---   *TSS             --------->ANAC58                     --------->ANAC58                       ----- >ALFIN1<------ZmHOX2a(1)  ----------->TBP --------->ANAC58          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---ZmHOX2a(1)      --------->ANAC58       --------->ANAC58   <---------TOE2(2)              -------- ----TOE2(3)  --------->ICU4             ---------->DOF2 --------->AtLEC2             <-----------GT1   gatgagtctaggagtaatgagcaagtcatataaatagagaagagaaagctacagagggcatgcataggttttttttttttttttttttttacttataaaa  20780400                                                             --------------->AGL15                                                             <---------------AGL15         --------->AtLEC2                                    <-----------GT1         --------->ANAC55(2)            --------->ANAC46                               ------->MYC3                 <---------ANAC58     <-----------ARR10    --------->ANAC46   --------------->AtSPL3          --------->At4g35610      <---------CCA1(2) ------>AHL20(2)       <---------------AtSPL8        --------->YAB1          <------ZmHOX2a(2) ---->AHL20(2)         <---------ZAT6  ----------->RAV1(1)  <---------ANAC58<---------ARR11(3) ->AHL20(2)<-----------GT1     <-------MYC3--------->At4g35610             --------->GLK1(1)      ---   taatatgcgaaattaacaatttgtagtggtacacgtttttacaacagttgaaaaatcatcttacttgatatagccagagatcaaatctcatccatgccaa  20780500                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                          --------->ANAC46                                                                                         <---------LBD16                                                                                         --------->LBD16                                                                                        --------->ANAC46                                                                                       <---------LBD16                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       ------->GAMYB<                                                                                    <-----------GT1<-                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->AHL20(2)                                                  <---------ARR11(3) ---           <---------AHL20(2)                                                  xxxxxxxxxxxxxxxxxxxxxx           --------->AHL20(1)                     --------->ARR11(3)           <---------GLK1(2) ----          <---------AHL20(2)         --------->AHL20(1)                       xxxxxxxxxxxxxxxxxxxxxxx          --------->AHL20(2)         --------->AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxxx       --------->AHL20(2)            <---------ARR11(3)                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->AHL20(2)             <---------AHL20(1)                       xxxxxxxxxxxxxxxxxxxxxxx   --------->AHL20(2)       --------->ANAC55(2)   --------->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2)        <---------AtLEC2      <---------AHL20(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)      <-----------GT1  <---------TOE2(3)              xxxxxxxxxxxxxxxx>smallRNA(s) ------>AHL20(2)     <---------MYB52(1) <---------AHL20(2)    --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxx   aaaaataaataaaaaaattgtctgttttttacatgactatatattaatgaaaaatattggctcataaaatgaaaacaactagattttaacccgcggtaca  20780600                                                                                                    <                                                                                                    x                                                                                                    x                                                                                                    -                                                                                                    x                                                                                                    x                                                                                                   <x                                                                                                   xx                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  xxx                                                                                                  xxx                                                                                                 <xxx                                                                                                 <---                                                                                                 xxxx                                                                                                 ----                                                                                                 <xxx                                                                                                 xxxx                                                                                                xxxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx    ------>NtERF2                                                                            xxxxxxxx  <------NtERF2                                                                              xxxxxxxx --------->LBD16                                                                             xxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(i)                                                                xxxxxxxx ----ALFIN1--------->AHL20(2)                                                                <xxxxxxx -->SPL7   <---------AHL20(2)                                                    xxxxxxxxxxxxxxxxxxxx ---ZAT14 --------->AHL20(1)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -TEIL    <---------AHL20(1)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -->ZAT14 --------->AHL20(2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -SPL7    <---------AHL20(2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xx>smallRNA(s)                                                            <---------AHL20(2)xxxxxxxx xxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------ANAC46                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------LBD16                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxsmallRNA(le3)                                                       <---------AHL20(2)   <xxxxxxxx xxsmallRNA(se3)                                                      <---------YAB1       <---------YAB1 xxsmallRNA(fl3)                                                  <---------AHL20(1)      xxxxxxxxxxx xsmallRNA(si3)                                                   --------->ARR11(3)      xxxxxxxxxxx ------>DEAR3(1)                                                  <---------ARR11(3)     ----------->GT1 x>smallRNA(se3)                                                  --------->AHL20(1)     --------->YAB1 ----->ANAC46                    <---------AHL20(2)             <---------AHL20(1)      <xxxxxxxxxxxx >smallRNA(le3)          ----------->GT1           ------->TEIL <---------AHL20(2)   <---------YAB1<x >smallRNA(se3)     <---------TOE1(3)             <---------CCA1(2)  <---------AHL20(2) <xxxxxxxxxxxx >smallRNA(si3)     <---------TOE2(3)    ----------->GT1        --------->AHL20(1)<xxxxxxxxxxxxxxxxxx xxsmallRNA(si3)   ---------->DOF2 <---------AHL20(2)        --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx   ccgcggggacaatttattttttaaagttagtatatataaaaatttgtaaattgtatctatctataaaatatttttattttatagtttacaattgttatta  20780700                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(1)       xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s) -----------GT1<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(s) -------->MYB52(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------ANAC55(2)    <---------LBD16 xxxxxxxxxxxxxxxxx>smallRNA(le3) ----->ANAC55(2)    <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxx>smallRNA(i)--------->LBD16 xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx>smallRNA(i)--------->ANAC46                              <---------ARR11(3)         ------- xxxxxxxxxxxxxxxsmallRNA(fl3)                                      --------->ARR11(3)         ------- x>smallRNA(se3)   --------->SPL7                            <---------TOE2(3)                <------ xxxxxxxx>smallRNA(s)--------->ANAC58                     <---------YAB1          <---------ICU4 xxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxx>smallRNA(i2)                             --------->AHL20(1)         --------->ATHB12 xxxxxxxxxxxx>smallRNA(si3)                        <---------AHL20(2)             -------->ATHB1 xxxxxxxxxxxsmallRNA(i2)                          --------->AHL20(2)              --------->YAB1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)   --------->AHL20(2)        <---------ATHB12 xxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i) <---------AHL20(2)       ------->TEIL <------- xxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(1)    <---------YAB1 xxxxxxxxx x>smallRNA(le3) <-----------HVH21 --------->AtLEC2--------->AHL20(2)------>ZmHOX2a(2)     xxxxxxxxxx   agtaacgtcctgccaaactcgtcccgcaaaacccatcctgcaaaaaaaactatttattttattaatgttgatcttatttatgaatcattgtctaaatatt  20780800  Previous    Next  AGI:  At3g55970.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G11180.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G05600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59837.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 20777714    to: 20780303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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