Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                -----                                                                                                <----       --------->ANAC58                                                                         <----       --------->ANAC46                                                                      <-------       --------->ANAC58                                                                      <-------     ---------->DOF2                                                                         <------- -------->ARR14(2)                                                                          <------NtERF2 -------->ARR11(3)                                     <---------WOX13(1)            --------->MYB52(1) ---------ARR11(3)                                  --------->WRKY38(1)        --------->At4g35610  - ------->CCA1(1)    <----------DOF2               <----------DOF2      --------->TOE1(3)  <---------DEAR3(1) ------->RVE1(1) <-----------GT1            ---------->DOF2            --------->TOE2(3) --------->At4g35610   aatatcttcaagcagcaattttcttttcaaaatcaaactaattccaaaaagactttgactgattcaacacataccttaagcctctgaaaacggctgcgtg  20773600                                                             --------->ANAC58                                                       --------->ARR14(1)                                                       --------->GLK1(2)                                                       --------->CCA1(2)                                                      <---------GLK1(2)                                                      --------->ARR11(1)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                     --------->HSFB2a(1)                                                     <---------HSFC1(2)                      --------                                                     <---------HSFB2a(1)              <---------RAP2.6(3)       --------->ZAT14                              ----------->ARR10                 ------>NtERF2 -------->DEAR3(1)                               <---------MYB46(3)                   --------->LBD16 ---------ALFIN1                                <---------ANAC46                     --------->ATERF1(2) ---->ZAT18                                   --------->MYB55(2)                     --------->RAP2.6(2) -----ZAT14                     <------NtERF2<---------AtMYB61         --------->ANAC58     --------- -----ZAT18              <---------O2        <---------DEAR3(1)        --------->ANAC58    <---------TOE2(3) --ANAC46               <------NtERF2        --------->ALFIN1--------->ANAC58        <---------ATERF1(2) --ANAC58      --------->YAB1 <---------DEAR3(1)--------->ALFIN1       --------->ANAC46<------NtERF2 --ANAC58  <------ZmHOX2a(1)  <---------ANAC46<---------MYB46(3)      --------->WOX13(1) ---------->DOF2 -------->AtMYB61      <-----------HVH21   ------->GAMYB<-------TEIL<---------ATHB12<---------LBD16   caccatcgctgcaggaatcagaagtcgtcgtggctgcgatttcaacggtggtgggagattcggaagccctatcaagcaactcaatagccggcaaaggttt  20773700                                                                            <---------YAB1                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                              --------->At4g35610                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                             <---------ARR11(3)                                                             --------->GLK1(2)                                                             --------->ARR11(3)                                                            <------ZmHOX2a(1)                                                            ======================HOX2a_HOX2a                                                           --------->HSFC1(2)                                                           <---------HSFC1(2)                                                   ------->GAMYB          --------->CCA1(2)                                                  --------->ANAC58        <------ZmHOX2a(2)                                                  --------->ANAC46       <---------ARR14(2)                                                  --------->ANAC58       --------->ARR14(2)                                                 ------>MYB83<---------AGP1------>ZmHOX2a(2)                                                 ------>MYB46(1)         --------->ARR11(3)                                                --------->MYB52(1)       <---------ARR11(3)                                               ------->GAMYB=====================HOX2a_HOX2a                   <---------At4g35610        <---------MYB52(2)         --------->AGP1           ---                   --------->At4g35610        --------->MYB46(3)     ---------->DOF2              <--       --------->At4g35610              <---------YAB1     --------->HSFB2a(1)        --------->DAG2       <---------At4g35610            <------ZmHOX2a(1)--------->ANAC58  <---------AGP1    --------->ANAC58   <-----------HVH21                  ===============================HOX2a_HOX2a----------->GT1   <-- --->GT1       <----------DOF2        ================================HOX2a_HOX2a    ---------->DOF2 -->GT1<---------LBD16--------->At4g35610--------->YAB1--------->ANAC58----------->ARR10   --------->ANAC58   aaaaccatcagcggaggctttagcagaagaagagagaagaggatgataaccaacggcacgaaggatctgaagaaagatctgatagaaaaaagcgagccag  20773800                                        --------->ANAC46            <---------ALFIN1         <---------ZAT14   ---------->DOF2       --------->MYB52(1) ------>ZAT14           --------->TOE1(2)                      ------>NtERF2 -------ZAT18          <---------MYB52(2)               <---------WRKY38(1)   <---------ANAC46 -------ZAT14 <---------ALFIN1 <------ZmHOX2a(1)        <---------WRKY12     <---------LBD16   ttcaccaaagtcttccacacttgaaacgaacgaggagagtatacaacatcggcctgagtcaactcggccataagagagtctcggagaagaatgaaaccaa  20773900                                                                                                  <--                                                                                      <---------AHL20(2)                                                                           --------->YAB1        ----                 --------->DAG2                                      --------->ANAC58 <---------AHL20(1)               ---------->DOF2                                       --------->ANAC58 --------->AHL20(1)       --------->GLK1(2)                  >>>>>>>>>TBF1            ---------->DOF2    --------->AHL20(2)       <---------ARR14(2)              >>>>>>>>>TBF1           ---------->DOF2       --------->AHL20(2)       --------->ARR14(2)           >>>>>>>>>TBF1        <------ZmHOX2a(1)<---------ATHB12       <---      <---------GLK1(2)          >>>>>>>>>TBF1         <---------TOE2(3)--------->WOX13(1) ----------   aattttcagaatctgaaaaaaggtgagatttagaagaagaagaagaagaagagacttgaggaagaaaaagaaagcaatcaaaaatgaataaatttgtaat  20774000    --------->AHL20(2) -------AHL20(2) ----->AHL20(2) ------AHL20(2) ->GT1      *TSS   ttaaaatgaattagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag  20774100                                             <---------HSFC1(2)                                             --------->HSFC1(2)                                             <---------MYB46(3)                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)                                            <---------AtMYB61                                        <------NtERF2                                        ------>ZmHOX2a(1)                                   <---------AtMYB61                                       ------>ZmHOX2a(2)                     ---------->DOF2  <---------DEAR3(1)     <---------DAG2        ------->TEIL -----            <------------CBF       <-----------RAV1(1)       <----------DOF2    <---------YAB1  -----   agagagagaggtgttattgtgaagaaaggaagaagctatggtggcgatggttcgatgaagtctctttttgagaatgacatttatgaattttgatcctcac  20774200                                                                             <---------YAB1                                                                       <---------AHL20(2)                                                                       <---------YAB1                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                              <---------YAB1                       --------->YAB1                            <---------AHL20(2)                 <------ZmHOX2a(1)                           <---------YAB1                    <---------TOE2(3)               --------                          <---------AHL20(2)             --------->CCA1(2)  <---------AHL20(2)         ---------->ID1--------->ARR11(3)               --------->ARR11(3)  <---------AHL20(1) ------   <---------ALFIN1    <---------ARR11(3)               <---------ARR11(3)<---------YAB1    --------- ---->ANAC58           --------->AHL20(1)             <---------TOE2(3)--------->ICU4      ---------- ---->ANAC58           <---------AHL20(1)  <---------AHL20(2)<---------TOE1(3)        ---------->DOF2   gcgctccacttgttgtattttggaatatttttattttagttgtatgttattgaaataagatttaaggaatgatattattatttttgggtaaagaaaagta  20774300                                                                                           <---------ANAC58                                                       <-------GAMYB                       <---------ANAC58                                                      ----------->GT1            <---------AHL20(2)  ------->TEIL                                        <---------ANAC46           --------->AHL20(2) --->GT1                                           --------->ALFIN1             <---------AHL20(2) --->AHL20(2)                               <------ZmHOX2a(1)                   --------->AHL20(2) >DAG2                                    --------->MYB59                    --------->ATHB12     <-- >DOF2         ------>NtERF2      ---------->DOF2<-----------RAV1(1)        <---------YAB1 ----------   aatgaatgttcaaaggctgccaactagatgatgccaaaaagaattaggaaaatgtggggttaagacgattttgttagtatgatttatttatgggcgtaat  20774400                                                                                                   xx                                                                                                  xxx                                                                                                  xxx                                                                                                 xxxx                          <---------WRKY38(1)                                                    xxxx                          <---------WRKY12                                                      xxxxx                         --------->SPL7                                                         -----                        ------>NtERF2                                                         xxxxxxx            ------>ZmHOX2a(1)                  --------->DAG2                             <---------AHL20(2)           --------->TOE2(3)                  ---------->DOF2                --------->ARR11(3) xxxxx     <---------YAB1     <------NtERF2  <---------ICU4                        <---------ARR11(3)xxxxxx    --------->ARR11(3)<---------ANAC46 --------->YAB1            ---------->DOF2<----------DOF2xxxxxx    <---------ARR11(3)<---------ANAC58<---------YAB1    ------>MYB83     ----------->HVH21--------->AHL20(2) ---------GT1         <---------ANAC58<---------ATHB12  ------>MYB46(1)  --------->WRKY12--------->AHL20(2) ->GT1     --------->TOE1(3)       <---------AHL20(2) <---------MYB59 <---------MYB46(3) <---------AHL20(2)   atacaatatcattccttaaatctggcggacaacgtttttaatcatagcaaaagtgaccaaactatatcaaagtcgttgacatcttttctaatttaaaaaa  20774500  Previous    Next  AGI:  At3g55960.1    Description:  NLI interacting factor (NIF) family protein. similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41370.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain Dullard-like phosphatase domain; (InterPro:IPR011948) Range:  from: 20771436    to: 20774012    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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