Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <-----------HVH21                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <-----------GT1     --------->At4g35610                                --------->AHL20(2)   <---------At4g35610                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------AHL20(2)  <---------DEAR3(1)                --------->ANAC58                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ---------->DOF2       -      ------->TEIL      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------TOE2(3) -------- --------->YAB1         ---------->DOF2         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58 -->ZAT2             --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------ZmHOX2a(1)    <-- ---At4g35610        --------->YAB1  --------->TOE2(3) <-----------RAV1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -->At4g35610       <---------YAB1<-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxx ---ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-----------GT1              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -ATERF1(2)      <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >ATERF1(2)      --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---RAV1(2)   <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gtattatgagcctattcttttaattataaagcatttaaacctctatttttctggtcgctgtcgctaattgagcgattgaggaaagaacaggccctaaaag  20671500                                                                                          --------->CCA1(2)                                                                                         --------->AHL20(1)                                                                                        --------->AHL20(2)                                                                                      ------>MYB83                                                                                      ------>MYB46(1)                                                                --------->AHL20(1)  <---------MYB59                                                               --------->AHL20(2)   --------------->AGL15                           <---------AHL20(1)                ------>MYB46(1)       ----------------->AG                        --------->AHL20(2)                 --------------->AGL15   ----------------->AGL3                       <---------AHL20(2)                  <---------MYB59         ==================                       --------->AHL20(2)                 ===========================================          <---------HSFB2a(2)                             ==========================================MADS_MADS          --------->HSFB2a(2) <---------AHL20(2)          ----------------->AG <---------ANAC55(2)         ===============================================MADS_MADS--------->CCA1(2)-------->P         ----------------->AGL1   <---------AHL20(1)      ----------------->AGL3 <-----------GT1    <-----------GT1   --------->AHL20(2)=============================================================MADS_MADS  <---------WOX13(1)  <---------AHL20(2)=============================================================MADS_MADS -------->ATHB12 --------->At5g28300    --------------->AGL15------>MYB83      <---------ANAC58 -->DOF2 ----------------->AG--------->AHL20(2)         <-----------GT1        --------->ANAC55(2) -------WOX13(1)----------->GT1   --------->ARR11(3)  <---------ANAC58         <---------ANAC58 xxxxxxxxxxxsmallRNA(le3)  --------->AHL20(1)         <---------ANAC58       <-----------GT1   attgatttacttccaaaactgtaaattaatatataatatatactccgaatagtatttcttaccaaatatatgaattgtattacttaccaaatatatgaat  20671600                             --------------->AGL15                             <---------------AGL15                            ----------------->AGL3                          <-----------GT1                       <---------ICU4               <---------ICU4                      --------->ICU4              ------------>CBF                   --------->WRKY18(1)           <-----------GT1                  ------------>CBF                 --------->LBD16          ----------->GT1                        --------->YAB1               <---------LBD16          <------------CBF                      <---------ICU4 =============================================MADS_MADS                     ------------>CBF =============================================MADS_MADS                 <----------DOF2     ---------   tgtatttcttatacaattccggtcaaaattaccatatatatgaattgtatttaacaatgactaatgtcatatttctttaacaatgacaattttggtcaaa  20671700                                                                        --------->AHL20(2)                                                                        --------->YAB1                                                                       <---------YAB1                                                                     --------->YAB1                                                                    <---------AHL20(2)                                                                 <---------ICU4                    --                                                              --------->YAB1                       <-                                                        <---------RVE1(1)                        <---                                                        <---------CCA1(1)                   ---------                   <-----------HVH21                   --------->ARR11(3)               <---------ANAC58         <-----------GT1                               <---------ARR11(3)  --------->ARR11(3)    <---  <----------DOF2 ------>ZmHOX2a(1)       ----------->GT1    <---------YAB1<---------AHL20(1)    ---- >WRKY18(1) <----------DOF2  --------->TOE2(3)  --------->AHL20(2)  --------->AHL20(2)  <---------ANAC58   cttcctttttttttcttttcctgtcaaacttccttcattttcaagggaaaaaaaatagatattttcataatttataatatatactcatgttcttgccaat  20671800              <---------AHL20(2)              --------->AHL20(2)                                  <----------DOF2       --------->YAB1                                            <---------DAG2            <---------ZAT2  <---------AHL20(2)                                       --------->WOX13(1)            <---------ZAT18  <---------YAB1                                    --------->TOE2(3)                   <---------ANAC58 ------->AHL20(1)                            <---------TOE2(3)<-----------GT1           <---------ANAC58 --------AHL20(1)                       ------->TEIL<---------MYB59               <---------AHL20(2) ------AHL20(1)                       --------->ZAT14     <---------AHL20(2)     --------->ICU4 --->CBF  <---------ICU4              <---------ZAT18     --------->AHL20(2)     --------->AHL20(2) ------ARR11(3)                       <---------ZAT14    --------->AHL20(2)    --------->YAB1 ----->AHL20(1)                  ------------>CBF  <---------ANAC55(2)      ----------->GT1<---------At4g35610   atatattattcataatttaaataacatagactaaattcaatgcacttaatgttacctaaattaatcacctttcttctacagtaataaatagcgagcttat  20671900                                       <---------ANAC58                                  <---------ICU4                                  --------->YAB1                                 <---------YAB1                    <---------MYB59    <---------ANAC58                                             <      <---------MYB59            --------->ICU4                                           <---------YAB1      --------->TOE1(3)     --------->ANAC55(2)                  <---------AHL20(2)     <----------DOF2      --------->TOE2(3)   <-----------GT1                        <---------YAB1  <-------------------   aaattctacctaaacattctagcctaatttacataatcatggcttccattactaattctcatcttatattattgtttataatctcttctacttttattgt  20672000                                           --------->At4g35610                                       ----------->RAV1(1)                                    --------->ANAC58                               <---------ZAT2                               <---------At4g35610                               --------->ZAT2                              =======================RAV              <---------GLK1(2)--------->At4g35610              --------->ARR11(3)    --------->ANAC58    --------->DOF5.7(2)       ----------->RAV1(1)    <---------MYB52(1)       <---------HSFB2a(2) <----------DOF2   --------->TOE2(3)         --------->HSFB2a(2)<---------ANAC58                           <---------ZAT14   --------->TOE1(3)         ======================RAV   <----------DOF2   ----------->GT1 --------->ZAT14 <---------TOE2(3)           <-----------RAV1(2)<---------ANAC58   --------->DAG2 --------->ANAC58 -----------GT1       <---------At4g35610<-----------RAV1(2)      ---------->DOF2 --------->ANAC58 -----ANAC81  <---------ARR11(3)  --------->At4g35610<-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i)   ttttacgttagcattagatttttcagatgttccagcagaagcaccagatggctttttacctttagccaaaaagcatgttgtaattcgcaatactgtagag  20672100                                                   <---------ARR14(2)                                       --------->ATHB12                          <---------ARR14(2)       --------->ARR14(2)               <---------TOE2(3)                  >>>>>>>>>EIN3       <---------YAB1                                <---------TOE1(3)                 <-------TEIL       <------ZmHOX2a(1)                           <---------GLK1(1)       ----------->GT1    --------->ARR14(2)      --------->GLK1(1)             --------->GLK1(1)   aatggagaagggttgaatatacattgcaaatccagtgaggatgatttgggacatatccatcttaaacatgggcatacttgggatttcaggtttcatgtta  20672200                                <---------AtMYB61                            --------->ICU4                                              --------->ARR11(3)                          --------------->AGL15                                         <---------ARR11(3)                          <---------------AGL15                                        --------->RVE1(1)                         <-----------------AGL3      --------->ATHB12                  --------->CCA1(1)                         ----------------->AGL3      <---------ICU4                --------->AHL20(2)                         <-----------------AGL2     <---------ATHB12              --------->AHL20(2)                     <-------GAMYB                  <---------YAB1                <---------AHL20(2)                    <---------ANAC58                --------->ICU4            <---------AHL20(2)                    <---------ANAC58      <-----------RAV1(2)                --------->AHL20(1)       <---------ARR11(3)<-----------------AGL1 --------->At5g28300          <---------ARR11(3)       --------->GLK1(2) ----------------->AGL1 <------NtERF2                --------->ARR11(3)       --------->ARR11(3)----------------->AG  ----------->GT1               <---------AHL20(1)<-----   acatgtcaaaatctacaaaatttcgttgccatttttggtggtatgcaggcggtaatgattttttcaattactggtttgatatatttaaaatatctagaga  20672300                 --------->ARR14(2)                 <---------ARR14(2)                 <---------ARR11(3)                 --------->ARR11(3)                                                       <---------YAB1                --------->CCA1(1)                                                       ----------->GT1           <------ZmHOX2a(1)                                                            --------->YAB1          ----------->GT1                                                      <---------ANAC58    --------->MYB46(3)                                --------->ARR14(2)       <---------ANAC46   >>>>>>>>>>MYB80   ------>ZmHOX2a(1)      ----------->GT1                    <---------ANAC58     < ----At4g35610  --------->RVE1(1)    ------->TEIL     <---------ARR14(2)      ---------->ID1      xxx   tgacaaaccatcaggaaaatatcctgtttgcaaagaatgcatttgggagttaaaccgatacggttttgaaggctatatttgtcgtataaatcgtgataaa  20672400  Previous    Next  AGI:  At3g55672.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55665.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83400.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 20671939    to: 20672439    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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