Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                 --------->ATHB12                                                               -----                 <---------ICU4                                                              <-------                <---------YAB1                                                             <---------                --------->ICU4                                                            ------>ZmHOX2a(2)            <---------WOX13(1)                 --------->TOE1(3)                        --------->ARR11(3)    --------->HSFB2a(2)                 <-----------GT1                                 <---------ARR11(3)    <---------HSFB2a(2)   <---------TOE2(3)   ----------->RAV1(2)                <---------ARR11(3)   cgtcttcgagagagattgattattagctaatgttcacgattttcacaaacctgaagtctctgttccaactctcttaaacccaaaatcatcgatctttgtc  20662000                                                                                                -----                                                               --------->GLK1(2)<---------DEAR3(1)                                                               --------->ARR14(2)              ------                                                               <---------ARR14(2)              <-----                                                        --------->AtLEC2     <---------DEAR3(1)<-----                                                   ------->GAMYB --------->TOE2(2)            -------                                                 --------->RAP2.6(3)       <-----------HVH21  ------- ----NtERF2        <---------HSFB2a(2)         ------>ZmHOX2a(1) --------->TOE1(2) --------->ALFIN1 ---->ETT(1)       --------->HSFB2a(2)------->TEIL--------->MYB46(3)      <---------ANAC58    <------ ----RAV1(1)    <-----------GT1------>ZmHOX2a(1)--------->MYB52(1)        <---------ANAC58    <------ -DOF2 <<<<<<<<<TBF1   --------->GLK1(1)    ---------->ID1    <---------GLK1(2)<------NtERF2  <------   ggagttttcttcttcattttaccagaactcttcctccatgaaccttgtcctaacggccatccaagaatctgcgatttcgtcggaggtgatgaaacagatc  20662100                      <---------ZAT2                      --------->ZAT2                   --------->LBD16                  <---------HSFB2a(2)                  --------->LBD16                  --------->HSFB2a(2)                  --------->ANAC46    ----------->RAV1(1)  <---------ZAT2 <---------LBD16  --------->ZAT2 --------->HSFB2a(2)  --------->At4g35610 --------->At4g35610  <---------At4g35610 --------->GLK1(1) ->ZmHOX2a(2)    <---------HSFB2a(2) --->GLK1(1)    ------>MYB46(1)               --------->At4g35610 -ZmHOX2a(2)    ------>MYB83<------ZmHOX2a(2) <---------ZAT2 ----GLK1(1)    --------->MYB52(1)            <---------At4g35610            <-----------HVH21      - -->ARR11(3)  --------->AtMYB61        <---------ARR14(2)             --------->WRKY12             <- -->ARR14(2)<---------ARR11(3)         --------->ARR14(2)             --------->WRKY45         ------ ---AGP1    <---------ARR14(3)    ----------->RAV1(1)                 --------->WRKY38(1)  --------->YAB1 ---ARR14(2)--------->ARR11(3)   <---------ALFIN1--------->At4g35610 --------->DOF5.7(2)  <---------ATHB12 ---ARR11(3)--------->ARR14(3) ----------->RAV1(1)                 <---------MYB46(3)   --------->WOX13(1)   tctcagctacagaagacctcccggagctcgatccaacaccagaacttgagctgctaagacttgaatcagtcgttgactcagtcactgagtcaatcaaacc  20662200                                 ===================================HOX2a_HOX2a                                 <------ZmHOX2a(2)                       <---------ARR14(2)                       <---------ARR11(3)                       <---------ARR11(1)                       <-----------ARR10                                                 --------->ATHB12                       --------->ARR14(2)                    ------>ZmHOX2a(1)          <---------YAB1      --------->DOF5.7(2) <----------DOF2               --------->YAB1                  --------->ICU4   <-------TEIL       <---------ARR14(1)           <---------At4g35610                ---------->DOF2 -------->YAB1        ------>MYB83            <---------ARR14(2)                ----------->GT1 --------ATHB12       ------>MYB46(1)         --------->ARR14(2)      XXXXXXXXXXXXXXXXXXXXX>MIR173 --->MYB46(3)         <---------CCA1(2)     --------->ANAC46--------->ANAC46  ---------->DOF2   aatgatacgtttactagtctcaccaaatcttttcgatccctcaaacccgatacagctattatcctccattttcgctaacaaaaagaaataaagattgagt  20662300                                                           <---------ICU4                                                           <---------AHL20(2)                                                           --------->ATHB12                                                           --------->ATHB51                                                           -------->HAHB4                              <---------YAB1               -------->ATHB1                              <------ZmHOX2a(2)           <---------YAB1                    <--------                             <---------ARR11(3)           <---------ATHB51                 <---------                             --------->ARR11(3)      ----------->GT1                     <---------YAB1                       --------->At4g35610           --------->YAB1                   --------->GLK1(2)                       <---------At4g35610  >>>>>>>>>TBF1 --------->ICU4      <---------HSFC1(1)    <                ---------->DOF2          >>>>>>>>>TBF1  <---------ICU4        --------->HSFB2a(2) <--           --------->LBD16  --------->GLK1(1)  >>>>>>>>>TBF1       *TSS       <---------HSFB2a(2) <--   ttttttagatacccagaaaaaaggaagcagagatcatagagaagaagaagaagaatagtaattattgtggtccatgaattcgagaaaaattctgattgtt  20662400                                                                            ---------->DOF2                                           --------->TOE2(3)              <---------AHL20(2)    <---------ANAC58                       --------->YAB1            <---------AHL20(2)    <---------ANAC58                       --------->TOE1(3)        --------->YAB1 -WOX13(1)                               ------->TEIL              <---------YAB1 ---CBF <-----------RAV1(1)             <---------CCA1(2)        --------->YAB1 ------------CBF                 <---------AHL20(1)             <---------YAB1                 ====== -------YAB1                     <---------AHL20(2)            --------->AHL20(2)              ------ -------AHL20(2)                 --------->AHL20(2)            <-----------TBP               <-------   ttaattgtttgtgttgttttttgttctgtcttcaaaaaatttgaatcttaacgtctctcttcgatttttataatattaaaaagaaatagtgagtcatcaa  20662500                   <-----------TGA1                   <-----------HVH21                  --------->ANAC46                  --------->ANAC58                      --------->LBD16                  --------->bZIP60(1)                 <---------LBD16                  <---------TGA1a               --------->ARR11(3)                  <---------O2                  <---------ARR11(3)                  --------->TGA1a             <---------MYB52(1)                  --------->ANAC58           --------->LBD16                  <<<<<<<<<<AtbZIP1         --------->ANAC55(2)                  ============================bZIP_DOF<---------HSFB2a(2)                  --------->bZIP60(2)       <---------ANAC55(2)                  --------->O2              <---------ANAC55(1)                  <---------bZIP60(1)       <---------ANAC46                <---------ALFIN1            <---------ANAC58     <---------MYB52(1)  --------->GLK1(1)  --------------------->WRI1    <---------RAP2.6(3)  <---------GLK1(1)  <---------ANAC58<---------ZAT6 ===========================bZIP_DOF   --------->ALFIN1--------->ANAC46 ---->DOF2    <-----------HVH21     --------->DAG2    --------->HSFB2a(2)                  >>>>>>>>>> --YAB1    --------->At4g35610     ---------->DOF2------>ZmHOX2a(2)                        <<<<<<<<<<   agtagccgttataatctgccacgtcagatttcggacaaaaagtgttccgtgatcttcccgcagtcttaagtccaaaaactcaaaaccaagagagtccatt  20662600                                   -------->HAHB4                                   <---------ICU4                                   <---------AHL20(2)                                  --------->ICU4                                  <---------YAB1                                --------->YAB1                                <---------ICU4                               <---------AHL20(2)                               --------->AHL20(2)                            <---------RVE1(1)                           <---------ARR11(3)                           --------->ARR11(3)                         ----------->ARR10                     <---------ANAC46                     <------MYB46(1) <---------YAB1        <---------MYB52(1)                       -    <-----------GT1  <------MYB83 <---------ATHB51        --------->LBD16  ------>ZmHOX2a(2)       -- >>>>>>>LFY         --------->MYB46(2)         <---------YAB1       <----------DOF2           ------- <<<<<<<LFY         <---------MYB46(3)  <----------DOF2   <-------GAMYB<---------YAB1         <------   ggaatttctccatttcatttgtttggtgagatattaattattcttttttataaatgtttccgttaaacttcttttgatcgcatagataattttctactga  20662700                                                                                                <----                                                                                               ------                                                                                           <---------AHL20(2)                                                                                          <---------YAB1                                                                                        <---------ICU4                                                                                        --------->YAB1                                      ----------->GT1                                  <---------YAB1                                <---------AHL20(2)                                  <---------AHL20(2)                             --------->AHL20(1)                                     <---------YAB1           --------->YAB1    --------->AHL20(2)                                     --------->ICU4 -------->DAG2               <---------AHL20(1)             <---------ANAC58      <---------CCA1(1) -------->DOF2              <---------AHL20(2)              <---------ANAC58     <---------ARR11(3) -------->AGL15         <---------AHL20(2)     --------------------->WRI1        --------->ARR11(3) ---------AGL15         --------->AHL20(2)     <----------DOF2       <---------MYB46(3)--------->ICU4   ataaagtatgttatcgtgatactgatttaaatattttaagaggtaacttctttggtttttttgcttaagagttgttgtgaatagatattattattatttg  20662800                                                                                --------->MYB52(2)                                                                               <-------TEIL                                                                            <---------TGA1a                                                                        <-----------HVH21                                                                    -------->ATHB1                                                                    --------->ATHB51                                                     ----------------->AGL1 --------->TGA1a                                                --------->ARR14(2)  <---------ICU4                                                <---------ARR14(2)  --------->ATHB12                                            <-------TEIL           --------->ICU4                                 <------MYB83   <---------ARR11(3) <---------AHL20(2)                                 <------MYB46(1)--------->ARR11(3) <---------ATHB51                 < -------GT1                    <---------WOX13(1)  <-----------GT1 --------->AHL20(2)             <-- ----->HVH21                 --------->ATHB12  <---------CCA1(2)--------->AHL20(2)                ---   acggtatgttaacacatttacaaaactacattgattggtctatagatgcatatattccattttggataaattattgtcacgttcgtttcgcaaatttctg  20662900  Previous    Next  AGI:  At3g55660.1    Description:  ATROPGEF6/ROPGEF6 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/. similar to ATROPGEF5/ROPGEF5 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor/ [Arabidopsis thaliana] (TAIR:AT5G05940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69097.1); contains InterPro domain Protein of unknown function DUF315, plant (InterPro:IPR005512) Range:  from: 20659921    to: 20662367    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version