Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------MYB52(1)                                                                                    --------->DOF5.7(2)                                                                                   --------->TOE1(3)                                                                                   --------->TOE2(3)                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(1)                                                                          <---------AHL20(1)                                                                         <---------AHL20(2)                                                                      --------->AHL20(2)                                                            --------->WOX13(1)   <---------TOE2(3) -------->AHL20(2)                                         --------->MYB46(3)   <-----------GT1 -------->YAB1              --------------->AGL15<---------YAB1      <---------AHL20(2)    <--------- ----->TOE2(3)   --------->ZAT18                 ------->TEIL-------->P  --------->AHL20(2)--------->ANAC58 ->GT1      --------->LBD16 --------->TOE2(3) --------->AtLEC2       --------->AHL20(2)    --------->ANAC58   attaatatcaattccgaagttcacaaaataccataaatatcaaattccatgaacattgtcatcaaccagaaataaataaattttacgttaattaagccaa  20571400    ------>ZmHOX2a(2)  ------->TEIL <---------ATHB12  --------->ARR14(2)  <---------AGP1  --------->ARR11(3)                                                               <---------TOE1(3)  <---------ARR11(3)      --------->YAB1           <-----------GT1                 <---------TOE2(3)  <---------ARR14(2)<---------ARR11(3)          --------->ANAC46      <---------MYB52(2) -ID1   ----------->GT1  <---------ATHB12----------------->AG       <---------ARR11(3)             --   aatggatctcgagttaaatcaatatcaataactattcaacatagccaaataagtcactattttagaacaagaactaactcaatttgaggttttcaaaatt  20571500                                             --------->ZAT14                                             <---------ZAT14                                       --------->TOE2(3)            <----------DOF2                                  <-----------HVH21           ----------->GT1                                 --------->ANAC58     <---------AHL20(2)              --------->TOE2(3)                                 --------->ANAC46    --------->AHL20(1)              ----------->GT1                                 --------->ANAC58   <---------CCA1(2)               <---------TOE2(3)                   <---------ARR14(2) --------->At4g35610   <---------TOE2(3)    <---------YAB1                   --------->GLK1(2)  --------->TGA1a<---------AHL20(1)          --------->ICU4                   --------->ARR14(2) =========================================bZIP_DOF   ---------->DOF2 ---->ZmHOX2a(1)  <---------GLK1(2)   <---------At4g35610   <---------TOE1(3)  --------->YAB1   cctatatcaatttagaacgagaatctccaaaacacaagtcacctcagtaaacttatatatttaagggttactttgtttttgtcataaatgttaaaagtta  20571600                                                                                        --------->ANAC46                                                         <---------ICU4               --------->ANAC58                                                     --------->MYB46(3)               --------->ANAC46                                  ====================================================MADS_MADS------                          <---------At5g28300     --------->YAB1                      --------->ANAC58                    <---------AHL20(2)           <---------ATHB12         <---------AHL20(2)   <-----                   --------->AHL20(2)           --------->ANAC58      <---------------AGL15   -------                   <---------AHL20(2)           --------->ANAC58<----------DOF2    --------->TOE2(2)                   <---------AHL20(1)          --------->WOX13(1)     --------------->AGL15  --------              --------->LBD16     --------------->AGL15--------->GLK1(2)  --------->AHL20(2)---------          <-----------GT1<-----------GT1      --------->MYB46(3)<---------DAG2     --------->TOE1(2)   ctaaaactgttttttccccaattttttttactgtttctctaattgtcaacaatcaacaatctttccctttttccatttaaaaaaacatacgcgaaaaagg  20571700                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                                                               <---------ARR14(2)                                                               <---------ARR11(3)                                                               --------->ARR14(2)                                          <---------ARR11(3)   --------->ARR11(3)                                         --------->ZAT2        xxxxxxxxxxxxxxxx>smallRNA(i)                                        --------->ANAC58       --------->AGP1   --------->ANAC46                     --------->ANAC58       <---------AGP1 ----->GT1                    <---------AHL20(2)              --------->RVE1(1) -----ID1       ---------->DOF2    <----------ID1          ---------->DOF2 ---->GT1  <----------ID1 <---------AHL20(2)      <---------ATHB12                              ----- ->DAG2   --------->DAG2  --------->AHL20(2)      ------------>CBF                   *TSS   ------>ZmHOX2a(2) ->DOF2  ---------->DOF2 --------->AHL20(2)       <------ZmHOX2a(2)       <<<<<<<<<TBF1    --------->GLK1(1)   aaaaaacgcgataaggccaaaagcccatttaataaatgggccaagctctccgatcaatagaaaaagatctgtcttcttcttctctattctctgatctctc  20571800                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                                 ----------->GT1                        <---------ARR11(3)                                 --------->ANAC58        --                        --------->ARR14(2)                                 --------->ANAC58    ------                        --------->ARR11(3)                                <---------TOE1(2)   -------                        <---------ARR14(2)                                <---------TOE2(2)   -------                        <---------AGP1                               <-----------HVH21     --------->TOE1(2)                        --------->AGP1                         <-----------GT1             --------->TOE2(2)                       <---------CCA1(2)                      --------->AHL20(2)        --------->ARR14(2) ---->YAB1     <-------TEIL          <---------ICU4--------->ANAC55(2)   <-----------RAV1(2)------>ZmHOX2a(1)   ataagaagggcttagggttcacttcagatctgtctttgaacattgctactctcaagtgatcaaattaactccgtcgcaggtaaattccacaatcctccga  20571900                                                                   <-------GAMYB                                                                  <---------ANAC58                                                                  <---------ANAC46                                                                  <---------ANAC58                                                              ------>ZmHOX2a(2)                                                             <------ZmHOX2a(2)                                                            <---------ARR14(3)               <------MYB46(1)                                                            --------->ARR14(3)               <------MYB83                                                            <-----------ARR10               ---------                                                            --------->GLK1(2)               ---------               <-----------GT1                              --------->ARR14(2)              ---------     --------->TOE1(3)                                      <---------ARR11(3)              <--------     --------->TOE2(3)      --------->ANAC46                <---------AGP1                  --------- ------->At5g28300          --------->ANAC58                --------->ARR11(3)             <---------MYB55(1) >NtERF2   <---------AHL20(2)                               <---------ARR14(2)             <--------P -->DEAR3(1)  <---------YAB1--------->ANAC58               <------ZmHOX2a(1)            <---------TOE2(3) ---->HVH21--------->AHL20(2)                            <---------TOE2(3)   <---------MYB52(1)   ---   ccgtaaaccctaatttatcactgttcttccaagaaacaagtttttgttttgatgaaattgaggatcttgcgttgaaatcgttttgtttctatggtaggtg  20572000                                                                                    <---------ANAC46                                                                                    <---------bZIP60(2)                                                                                    <---------TGA1a                                                                                    --------->O2                                                                                 ----------->HVH21<--                                          --------->ARR14(1)                    --------->HSFB2a(2)                                          --------->CCA1(2)                     ------>ZmHOX2a(1) ---       <-------TEIL                      --------->ARR14(2)                     <---------HSFB2a(2)      --------->CCA1(2)                  --------->ARR11(1)                  ------>ZmHOX2a(1) ------     <---------ARR14(2)                  <---------ARR14(2)                 <---------ALFIN1   <-----     --------->ARR14(2)                 <------ZmHOX2a(1)                 ------>ZmHOX2a(1) <--------  <------ZmHOX2a(1)  <-----------GT1   ----------->ARR10                 <---------ALFIN1   <-------- >MYB46(2)          <---------YAB1 <------ZmHOX2a(1)                   ------>ZmHOX2a(1)  --------->CCA1(2) >MYB111(1)     <---------DAG2  <---------HSFB2a(2)                   <---------ALFIN1   <---------ARR14(2) >MYB111(2)     <----------DOF2 --------->HSFB2a(2)                 ------>ZmHOX2a(1)    --------->ARR14(2) -MYB46(3)    ------>NtERF2     --------->LBD16<---------AtMYB61   <---------ALFIN1 <---------O2<---- >MYB55(2)    <------NtERF2    <---------TOE1(1)<---------MYB46(3) <xxxxxxxxxxxxxxxxsmallRNA(se3) <-- ------>ICU4<---------ZAT18  ------>ZmHOX2a(1) --------->ALFIN1  ------>ZmHOX2a(1)  --------->TGA1a<-   atgaggagatacagtccgccttattacagtcctccgaggagaggatacggtggtcgaggtagaagtcctcctcctcctcctcctcgacgtggatatggtg  20572100          <---------AtMYB61          --------->ALFIN1        <---------MYB46(3)       --------->ALFIN1       <---------AtMYB61       <---------DEAR3(1)     <---------MYB46(3)    --------->ALFIN1    <---------DEAR3(1)    <---------AtMYB61   xxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------MYB46(3) <---------DEAR3(1)        ------>ZmHOX2a(2) <---------AtMYB61        <------ZmHOX2a(2) --------->ALFIN1        --------->ARR11(3) -------DEAR3(1)         <-----------ARR10 ------>ALFIN1           --------->GLK1(2) --->ALFIN1              --------->ARR14(2) ----AtMYB61             <---------AGP1 -AtMYB61 <---------DEAR3(1)                                            ----------->GT1 ---RAV1(1)<---------MYB46(3)     --------->AtLEC2                 <---------WOX13(1)           <---- -----MYB46(3)           <---------ARR11(3)                     <---------YAB1                  <---- -------AtMYB61          <---------ARR14(2)       ----------->GT1--------->ATHB12       <---------MYB52(1) --------MYB46(3)       <------ZmHOX2a(1)        <-------TEIL------>ZmHOX2a(1)         <----------DOF2   gtggtggtggtggtggtggacgtagaggatctagccatggaagtctcttggttcgtaacattcctcttgattgcaggtaaattctcttcctttggtttaa  20572200                                            <---------MYB46(3)                                          <-------GAMYB                                         <---------MYB46(3)                                         --------->MYB111(2)                                         --------->MYB55(2)                                        <--------P                                       <-------GAMYB                                      <------MYB46(1)                                      <------MYB83                                     --------->MYB55(2)                                   <---------MYB52(1)                                          <-----                                 <---------ANAC58                                     <---------ANAC46                                 <---------ANAC58                                     <---------ANAC58                             <---------ARR11(3)                                       <---------ANAC58  <---------YAB1             --------->ARR11(3)                                      <-------TEIL -----TOE2(3)         <----------DOF2<---------MYB46(3)---------->ID1            --------->ARR11(3) -----TOE1(3)       <---------YAB1<-------GAMYB      <-----------RAV1(1)         <---------ARR11(3)   agttttgattttgttttagtttatctttgaagatttcgttgggttgttgttgattttgttgtttttgattttgtagaccagaagagcttcgtgagccctt  20572300  Previous    Next  AGI:  At3g55460.1    Description:  SCL30 (SC35-like splicing factor 30); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:BAC78592.1); similar to hypothetical protein OsI_037556 [Oryza sativa (indica cultivar-group)] (GB:EAY83597.1); similar to Os12g0572400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067091.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20571785    to: 20574740    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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