Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->AHL20(2)                             --------->HSFB2a(2)                        ------>ZmHOX2a(1)    <---------AHL20(2)        --------->YAB1                       --------------->AGL15 --------->AHL20(2)     <----------DOF2                     ---------->ID1  --------->TOE2(3)             ------>ZmHOX2a(2)                  <---------AtMYB61  --------->TOE1(3)           <---------ARR11(3) ----ALFIN1<---------ZAT14   <---------HSFB2a(2)                 --------->ARR11(3) -PCF5    --------->ALFIN1<----------DOF2   --------->AHL20(2) <---------YAB1       ---------->DOF2--   cttggtagaagagtggagttttggtcctcttttagaaaaccataaattttattctgtattgttttatgatctttcatagaatgctctaaagtctaaaaac  20529000            <---------ARR11(3)            --------->ARR11(3)            <---------AHL20(2)                                                               <------NtERF2            --------->AHL20(2)                                                              <--------            --------->AHL20(1)                                                --------->ARR11(3)            <---------AHL20(1)                                                <---------ARR11(3)      --------->TOE2(3)                                                ------>NtERF2       --------->ETT(1)      --------->YAB1                                                  ----------->HVH21    <---------RAP2.3(3)    <---------ARR11(3)       <---------ANAC58                         <---------ETT(1)    --------->DDF1    --------->ARR11(3)       <---------ANAC58                         --------->DEAR3(1)  --------->RAP2.6(3) -------->DOF2         <---------YAB1                       <-----------RAV1(1) ------>ZmHOX2a(2) ---   caaaagtatcttaatatattggattattatttcttgacgctccaattctctcttctcttcatatgttgttctccgaccatgatcttaaaaatgtcggcac  20529100                           --------->ARR11(3)                           <---------GLK1(2)                           <---------ARR11(3)                           --------->ARR14(2)                           <---------ARR14(2)                                                  ------                          --------->HSFB2a(1)                                                 -------                          <---------HSFB2a(1)                                                 <------                  <---------MYB52(2)                                                          -------             ----------->GT1--------->GLK1(2)                                                <-------            --------->DAG2--------->HSFC1(2)                                                 <-------     ----------->GT1      <---------HSFC1(2)         <---------ARR14(2)                      <-------     <---------ZAT6 --------->MYB52(1)               --------->GLK1(2)                --------------- -DEAR3(2)---------->DOF2----------->ARR10           --------->ARR14(2)    <------ZmHOX2a(2)<-------- ------>MYB52(1)  --------->MYB46(3)      ---------->DOF2        ---------->DOF2--------->AHL20(2)   aaacagagtgataaaaggtaacaaacgaagattcttgacattagaaaagactgagaatccaatagattaaagagtagatcaaatatatgcctattgcgga  20529200                                                                           --------->ARR14(2)                                                                           <---------ARR14(2) --------->YAB1                                                            --------->GLK1(2) >NtERF2                     <---------YAB1                      <------MYB83 -->LBD16                  <---------ICU4                        <------MYB46(1)<---------AHL20(2) ---ZAT18                  --------->YAB1<---------ARR14(2)     --------->MYB59 --------->AHL20(2) -->ZAT18                 <---------ATHB12                <---------AHL20(2)  <----------DOF2 --ANAC46          --------->WOX13(1)    ------>MYB83<---------ARR11(3)    <---------ARR11(3) --ANAC58       --------->ANAC58         --------->ARR14(2) <---------TOE2(3)------>ZmHOX2a(2) --ANAC58       --------->ANAC58         ------>MYB46(1) <---------YAB1    --------->ARR11(3) -->AGL1      --------->CCA1(2)         --------->WOX13(1)--------->AHL20(2)<------ZmHOX2a(2) -LBD16--------->YAB1     <---------ATHB51     ------->TEIL---------->DOF2<------ZmHOX2a(1)      <---   ctataacaattagaagataagcaatccaattatgcctgttaccaatccgaacctagataattaaagttggtccaaaggatctttaatttcgaaaaccttc  20529300          <---------ICU4          --------->YAB1         <---------ATHB12       --------->WOX13(1)                        ------->MYC3      <---------AHL20(2)                         <-------MYC3      --------->AHL20(2)             --------->ANAC58     <---------ATHB12                --------->ANAC58 ------------>CBF               ---------->DOF2 --------->O2        *TSS                     <------- -------DOF2           ----------->GT1------------>CBF           ---------->DOF2 <-----------GT1   ttttgcaattaatcatcaaaacaagtggcaaaaaaaaagaagcaatggccacgttttttttttttttgaaagtcgaaatcaaatcacattaccccaaatc  20529400                                                                        ----------->HVH21                                                                  --------->RVE1(1)                                                                 <---------ARR11(3)                                                                 --------->ARR11(3)                                                                 --------->GLK1(2)                                                             <------ZmHOX2a(1)                                         <---------At4g35610--------->ANAC58                                         --------->At4g35610--------->ANAC58                        -           <----------DOF2     <---------ANAC58            <---------TOE2(2)                        -    <----------DOF2------>ZmHOX2a(1)<----------DOF2      --------->TOE1(2)                         -- --CCA1(2) --------->TOE2(3)   <---------ANAC58       ---------->DOF2 <----------DOF2          <-----   tctcttctttgaactttaatcctcttctctattgcatgctttaagctccaaacccaaaacgcaggaaaatctctttgacagtttttggttttagatggga  20529500                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------NtERF2                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                           --------->DEAR4(2)                                                                                           --------->ERF1                                                                                           --------->ORA47(2)                                                                                           --------->ATERF1(1)                                                                                           --------->RAP2.6(1)                                                                                          --------->At4g35610                                                                                          --------->LBD16                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                        <---------ZAT2   --------->ANAC46                                                                        <---------At4g35610--------->RRTF1(1)                                                                        --------->At4g35610--------->RAP2.3(1)                                                                     <---------At4g35610 ------->GAMYB                                                                     --------->At4g35610--------->MYB46(3)       <----------ID1                                               <-----------RAV1(1)<---------ATERF1(1)  --------->YAB1                                                  <XXXXXXXXXXXXXXXXXXXXMIR834<------- <---------ATHB12                        <-------TEIL       <---------At4g35610       --------->ARR14(2) ----->MYB46(1)            <---------At4g35610           <---------ANAC58             <---------ARR14(2) ----->MYB83               <---------ZAT14   ------>ZmHOX2a(2) <---------At4g35610  --------->LBD16 ------->WOX13(1) >>>>>>>>>TBF1         <--------P       <---------ANAC58         <---------LBD16 ----PCF2  ---------->DOF2 --------->At4g35610           <---------ANAC46  <---------At4g35610-------   ccaatcaaaacgataaagaagaagaagagagcagagaagaaggttgatcggaacgtattgcttgctgctactgctgctgctacttccgcatccgccgccg  20529600 ->NtERF2 ---->At4g35610 -----At4g35610 ----DEAR3(1) --->RAP2.3(2) --->DEAR3(1) -->ATERF1(1) -->RAP2.3(1) ->ABI4(1) --ATERF1(1) >RAP2.3(3) >DEAR3(1) -DEAR3(1) >RRTF1(2) >ANAC46                                                     <---------ARR14(2) >RAP2.3(2)               ------>NtERF2                      --------->ARR14(2)                     - >RRTF1(3)             ------>NtERF2               <------MYB83                                     - >RAP2.6(2)         ------>NtERF2                  <------MYB46(1)                                  - >ATERF1(2)        --------->DEAR3(1)             <---------AtMYB61                                -- -ALFIN1--------->YAB1--------->DEAR3(1)          <---------MYB46(3)                              <-- -ATERF1(2)      ------>NtERF2   <---------ICU4   --------->ALFIN1                      <----------DOF2 --RAP2.3(1)    --------->DEAR3(1) --------->At4g35610       <---------GLK1(2) <---------TOE2(3)<---- -->DEAR4(2)  ------->GAMYB   --------->YAB1     <---------WOX13(1)         --------->ICU4     <-----   ctgctcttaataacaacgacgacgacgacgactcatcatctcagtctttggattggtgggatggattctctcgccgtatttatggtatctcttttttttt  20529700            <---------MYB46(3)        <-----------RAV1(1)      <---------ANAC58      <---------ANAC58   <----------DOF2  <---------DAG2 ----->MYB83<------MYB46(1) ----->MYB46(1) ------->P  <------MYB83 ---->ZmHOX2a(1)                                                                      --------->GLK1(2) -------MYB59  <---------MYB46(3)                                                     --------->ICU4 -------GT1<---------AtMYB61                          <---------YAB1    <---------ANAC46 ------GT1<--------P<---------YAB1<------NtERF2    ------->TEIL         <---------AtLEC2 <---------YAB1   cctacctttcttgttggtggtgatttttgcattggcagagtttttgttttttgaatctaattgttgattctgtttcatggaacttgcaattctgaatgtt  20529800                         --------->DAG2                --------->HSFB2a(2)                               ------>ZmHOX2a(1)   <---------AHL20(2)   ---------->DOF2            <---------ETT(2)     --------->YAB1  <---------YAB1<---------HSFB2a(2)             <---------REM1(1) <----------DOF2<<<<<<<<<<<<<<<<<LFY   gatttttatttgggttttctaggtgaaaaagtttcagattgaatttagtaatgtagacaagagatgtcctttaatcttactctgtacattggagtattgt  20529900  Previous    Next  AGI:  At3g55340.1    Description:  RNA recognition motif (RRM)-containing protein. similar to 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative [Arabidopsis thaliana] (TAIR:AT2G35410.1); similar to hypothetical protein OsI_017529 [Oryza sativa (indica cultivar-group)] (GB:EAY96296.1); similar to Os05g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054461.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20526624    to: 20529036    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g55350.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69251.1); contains domain PTHR22930 (PTHR22930) Range:  from: 20529368    to: 20531852    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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