Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              <------                                                                                              -------                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                         <---------GLK1(1)                                                                                         --------->GLK1(1)                                                                                        --------->AGP1                                                                                        --------->ARR14(2)                                                                                        <-----------ARR10                        --------->LBD16                                                 <---------ARR14(2)                       <---------ANAC58                                <--------ZAP1    <---------AGP1            --------->GLK1(1)                            -------->P   <------MYB46(1)   --------->ARR11(3)           --------->ARR14(2)      <---------YAB1     <---------MYB52(2)--------->WRKY18(1)   ------- ------------AtSPL8    <---------ANAC58  <-----------HVH21----------->RAV1(2)          <---------CCA1(2) ---WOX13(1)---------->DOF2      <---------ICU4     <-----------GT1   <---------DEAR3(2)<---------ARR11(3) >ATHB12   <---------ARR14(2)    --------->YAB1     --------->ZAT6    <------MYB83     <---------At4g35610   gagtacaaaaccagaaatgccaattccgagcaaaatcatgagttgtcagaagtttcactaacctggacgagtcggtcaaactggtgttcagatctctgct  20524000                                                                                           ------->GAMYB       --------->TOE2(3)                                                                ----------->RAV1(1)      --------->ATHB12                                                                --------->At4g35610      <---------ICU4                                                                 --------->RAP2.6(2)      <--------HAHB4                                                               --------->ZAT2      -------->ATHB1                                                               <---------At4g35610      --------->YAB1                                                               --------->At4g35610     --------->ICU4                                                               ----------->RAV1(1)   --------->YAB1                                                              ----------->RAV1(1) ---At4g35610   --------->ANAC58                                 --------->ZAT14--------->ZAT2      - ---ZAT2        --------->ANAC58  <---------ICU4                 <---------ZAT18<---------At4g35610 - -->At4g35610 ---------->DOF2   --------->GLK1(2)                --------->ZAT18--------->At4g35610-- -->ZAT2<---------YAB1        --------->MYB46(3)            ---------->DOF2  --------->At4g35610 ----   gactagaatcattagagaaagcaagaacatcaacaatcttggcgaagtaatgcaagtagacaataagcgcagtaccatgagcagcagcagcaacagagcc  20524100            --------->MYB46(3)           --------->ANAC58  --------->ANAC46           --------->ANAC46 <------NtERF2           --------->ANAC58 <---------At4g35610                       <---------MYB46(3)       --------->ANAC58     --------->At4g35610                      <---------AtMYB61       --------->ANAC58   <---------DEAR3(1)                         --------->ALFIN1      <---------ICU4      ---------->CDC5--------->ZAT2           <---------AtMYB61   --------->YAB1         <---------WRKY12                        --------->ALFIN1  <---------ATHB12        <---------WRKY45                    <-----------RAV1(2)  <<<<<<<<<ARR2           <---------WRKY38(1)                --------->ZAT2  <<<<<<<<<ARR1         <-----------HVH21<---------At4g35610 --------->At4g35610 -------->WOX13(1)---------->DOF2        --------->At4g35610----------->RAV1(1) -------->YAB1--------->WOX13(1)      ----------->ARR10   --------->At4g35610 ------->MYB46(3)--------->YAB1  --------->ANAC58         <---------At4g35610 ------->RAV1(1)<---------ATHB12 --------->ANAC58---------->DOF2 <------ZmHOX2a(1)             <-----   aacaatcataagcacccaatcaaagcggtcagcgcaagcgaagagctgagagaaaggaacagcagcaggaggtggttcaagctcatcttgatcatccatc  20524200                            ----------->HVH21                           <---------SPL7                          --------->DEAR3(1)                          <---------ANAC58                          <---------ANAC58                         <------NtERF2                        --------->ABI4(1)                        ------>NtERF2                       --------->DEAR3(1)                       <---------DEAR3(1)                       --------->DREB2C(2)                       --------->ATERF1(2)                       --------->RRTF1(3)                       --------->RRTF1(2)                       --------->RAP2.3(3)                       --------->RAP2.6(2)                       --------->RAP2.3(2)                      --------->ATERF1(1)                      <------NtERF2                      --------->ORA47(2)                      --------->RAP2.6(1)                      --------->RAP2.3(1)                      --------->ERF1                     <---------ATERF1(1)                     --------->At4g35610                     ------>NtERF2                     <---------At4g35610                     --------->ABI4(1)                     <---------RAP2.3(1)                     <---------DEAR4(2)                     <---------DREB2C(1)                    --------->RAP2.3(2)                    <---------ALFIN1                    --------->RRTF1(2)                    --------->ATERF1(2)                    --------->RRTF1(3)                    --------->RAP2.3(3)                    <---------DEAR3(1)                    --------->DEAR3(1)                    <---------ATERF1(2)                   --------->DEAR4(2)                                                    <---------ANAC46                   --------->RRTF1(1)                                                   <------NtERF2                   --------->RAP2.3(1)                                                --------->ALFIN1                   --------->RAP2.6(1)                                              --------->TGA1a                   --------->ORA47(2)                  <-----------RAV1(2)          <---------O2                   --------->ATERF1(1)   ==========================RAV              --------->O2                   <------NtERF2         ----------->RAV1(1)                        --------->At4g35610                   --------->ERF1<-------PIF5        ----------->RAV1(1)            --------->ZAT2                  <---------RAP2.3(1)  --------->MYB46(3)                           <---------ZAT2                  <---------ATERF1(1) ------>NtERF2<---------At4g35610              <---------At4g35610               <---------ATERF1(1) --------->SPL7  --------->At4g35610            <-----------RAV1(2)      --------->At4g35610--------->ATERF1(1)     ---------->CDC5            <------ZmHOX2a(1)   <---------At4g35610--------->DEAR4(2)--------->AtMYB61             <------ZmHOX2a(1)<---------MYB46(3)   --------->At4g35610--------->RRTF1(1)<---------ALFIN1          --------->CCA1(2) <---------TGA1a<- ----CCA1(2) <---------MYB52(1)  ------->PIF5    =============================================MYC_MYB   tcttcatcagcctccgctagcgccgccgccgtgcccgtgccaccaccagactcagcaccagggtcgagataaggagaaggagactcaggtggctcggaga  20524300                                                                                   --------->ANAC58                                           --------->LBD16                         --------->ANAC46                                 --------->ATERF1(1)                               --------->ANAC58                                --------->LBD16                      <---------LBD16 --------->ANAC46                               <---------DEAR3(1)            --------->YAB1      <---------ALFIN1                               <---------ANAC46             ======================HOX2a_HOX2a                              <---------LBD16               <------ZmHOX2a(2)    ----------->RAV1(1)                      <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->AtMYB61                      <---------ANAC58  ------>MYB83  --------->HSFB2a(2)       --------->ANAC58                      <---------ANAC58  ------>MYB46(1)    --------->ARR11(3)   --------->ANAC58                 <---------MYB46(3)   --------->AtMYB61    <---------ARR11(3)  ----------->RAV1(1) --------ZAT14   --------->ATHB12<------NtERF2        <---------HSFB2a(2)  <------ZmHOX2a(1)   cttcagagactggagttaatggttgcatatgaggcggagaccatccgaataaacctctagagatcatcatcttcggaggagcaccacacaaaacaccttc  20524400                                                                          <-----------RAV1(1)                                                                         ------>ZmHOX2a(2)                                                                         ============================                                                                       --------->ARR14(2)                                                                       <---------AGP1                       <---------RVE1(1)                               <---------ARR14(2)                      --------->ARR11(3)                  <---------------AGL15                      <---------GLK1(2)                   --------->HSFB2a(2)              --------->ARR11(3)                 <-----------GT1  --------->At4g35610              <---------GLK1(2)             ---------->ID1--------------->AGL15              <---------ARR11(3)     <------------------------ANAC81   <---------ARR11(3)          >>            ----------->ARR10       <---------YAB1   <<<<<<<<<TBF1--------->ZAT2               <-----   tgtgttgaaaaccctagattttcagatttttagggattttgattttgtttttttcttcttctaaaattagctggatctgttgctaagtttgtagagagga  20524500                                                                      --------->ATHB51                                                                      <--------ATHB1                                                                      <---------ICU4          -------                                                                      --------->YAB1          <------                                                                      <---------AHL20(1)      <------                                                                      --------->AHL20(2)      <------                                                                     <---------ATHB12         -------                                                                     --------->ICU4          <-------                                           <----------DOF2       ------------>CBF            --------                                          <----------DOF2  --------->ATHB51                --------->YAB1        ------------------------>ANAC81 --------->LBD16    --------->AHL20(2)             <---------YAB1        >>>>>>>>>TBF1       <---------ATHB51               <---------ICU4          <---------RVE1(1)     >>>>>>>>>TBF1          --------->ICU4<---------DAG2   <---------AHL20(2)      <---------CCA1(1)  >>>>>>>>>TBF1             --------->AHL20(2)            --------->ICU4          <---------ARR11(3) =HOX2a_HOX2a               <---------AHL20(2)         <---------AHL20(2)         --------->ARR11(3) >>>>>>>TBF1          >>>>>>>>>TBF1     ------>NtERF2  --------->AHL20(2)       ----------->ARR10   < -ZmHOX2a(1)--------->GLK1(2)--------->AHL20(2)     <----------DOF2  <---------ATHB51   --------->YAB1   agaagaagaagaagaatcgtagaagaagaaataattttcttccgccttttttttcttttaattattttccaataattttggtgagattttttataataat  20524600                                   --------->At5g28300                                  --------->TOE2(3)                                ------>MYB46(1)                                --------->MYB52(1)                                -------->P                               --------->MYB55(1)                              <---------MYB111(2)                             --------->At4g35610                          <---------MYB52(1)                          <------NtERF2                         <---------RAP2.6(3)                         <-----------TGA1                        <---------ANAC58                        --------->ATERF1(2)                        --------->RAP2.3(3)                        <---------ANAC58                        <---------bZIP60(1)                        <---------ATERF1(2)                 <---------ZAT14------>MYB83               --------->ZAT18<---------MYB46(2) -->ATHB51     <---------ZAT18<---------MYB55(2) ---ICU4       --------->ZAT14<---------MYB111(1) --ATHB1  --------->ZAT14<-----------HVH21                   ------->GAMYB ---AHL20(2)   <---------ZAT14--------->MYB46(3)          --------->MYB52(1) -->AHL20(2)<---------ANAC46 <---------At4g35610       <---------At4g35610                         <- --YAB1   <---------ZAT14------>NtERF2 --------->ZAT6  --------->At4g35610                     <----- ->ICU4<-------GAMYB    --------->bZIP60(1)        --------->ARR14(2)                          ------ -----------RAV1(1)   <---------ZAT18--------->SPL7<---------ARR14(2)                       ---------   ttgtgttgccgttgcagtgtactgtgccgtcacctaccgtaacacaagagctggttctgctaacggacacagcgacttcgagtttgcatattttttatat  20524700        <---------At4g35610                          --------->At5g28300        --------->At4g35610                       --------->At4g35610                    <---------At4g35610 ----------GT1                                    <---------At4g35610                    --------->At4g35610 ----AHL20(1)                                <---------HSFB2a(2) <---------DAG2      --------->MYB52(2) --->AHL20(1)                 <---------YAB1 --------->HSFB2a(2) <----------DOF2   <--------P >AHL20(2)       ----------->HVH21       <----------DOF2   ----------->HVH21<----------DOF2   attactggtgagctaattcttgacagagcatttcgattactgactttctcgtagctgtaacatgacactttataagccctttctggttagtagctgaagc  20524800                             ------>MYB83                             ------>MYB46(1)                           <---------MYB59                        <-----------GT1          ---------->DOF2                        >>>>>>>>>>WRKY38    <------MYB46(1)                        >>>>>>>>>>WRKY26    ----------->GT1                --------->ANAC58     <----                 <------ZmHOX2a(2)          <------MYB83                   --------->ANAC58------->TEIL                <---------ARR11(3)         --------->MYB59              <------NtERF2--------->ATHB12       <---------YAB1   >>>>>>>>>>WRKY43   --------->MYB46(2)        <------ZmHOX2a(1)    <---------GLK1(2)   tacaaaactatgactagagatcaaattgaccaaacaagatgaagttaggttaaaagcagagagagaggtaaggaggcaagtcaagagttattgaatctct  20524900  Previous    Next  AGI:  At3g55320.1    Description:  PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances. Identical to Multidrug resistance protein 14 (MDR14) [Arabidopsis Thaliana] (GB:Q9M3B9;GB:Q8GX68); similar to PGP6, ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G39480.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59584.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69261.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21722.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain Range:  from: 20517969    to: 20524370    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g55330.1    Description:  PPL1 (PSBP-LIKE PROTEIN 1); calcium ion binding. Identical to PsbP-related thylakoid lumenal protein 2, chloroplast precursor [Arabidopsis Thaliana] (GB:P82538); similar to PPL2 (PSBP-LIKE PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G39470.2); similar to PPL2 (PSBP-LIKE PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G39470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69262.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II Range:  from: 20524802    to: 20526328    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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