Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   --------ALFIN1 ------->DEAR3(1) ------->AtMYB61 ------>MYB46(3) ---->AtMYB61                                           <---------DAG2                    --------->PCF2 --->MYB46(3)                                           <----------DOF2               <---------MYB52(1) ->P   <----------DOF2                               <---------ALFIN1                <-----------HVH21 -MYB52(2)                                        <---------PCF5                     <-----------TGA1 -MYB55(2)                                      <---------WOX13(1)           ----------------->AGL1 >MYB46(3)                                 <---------ANAC55(2)             --------->ANAC46      ---- -MYB111(2)       <---------YAB1   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ANAC58 --------- -MYB111(1) ------->TEIL   ----------->GT1 --------->ANAC55(2)             --------->ANAC58<---------   accacctctctttgtacgttgtaatagaaatgttatataggtgatatgtgatggaccacttttgttattctctcttcatgccattttcgtcaggcccact  20516400                                                                  --------->YAB1                                                                  <---------AHL20(2)                                                                  --------->AHL20(2)                                                                 <---------YAB1                                                               --------->YAB1                                                               <---------ICU4                                                              <---------ATHB51                                                              --------->AHL20(2)                                                              --------->ICU4                                                              <---------AHL20(2)    ---------->DOF2                                         --------->YAB1                      ----- ------>DOF2                                          ----------->GT1                           ----- >ZAT18 <------ZmHOX2a(1)                 --------->PCF5  --------->AHL20(2)        ----------->ARR10 --------AGL1                  <-----------GT1      ---------->DOF2   <-----------GT1 <---------GLK1(2)   aaggcccaaaggatgtgtttagtcaaacccaaataacaaacttggtccccaaacaaaagaaaaaataattatatacagtatttgtttagattcttcacaa  20516500                                                                <----------DOF2                                                               <---------AtLEC2                                                               <---------ANAC46                                --------->LBD16                <---------ANAC58                            --------->ARR14(2)           <---------YAB1                           --------->WOX13(1)           --------->AHL20(1)                         <---------ATHB12               <---------AHL20(1)                        ------>MYB46(1)               <---------AHL20(2)       ---------->DOF2  ------>MYB83                  <---------AHL20(1)   <---------TOE2(3)   --------->WOX13(1)            --------->YAB1  ---------->DOF2  <-----------GT1                  <---------AHL20(2)                           ---- ---->ANAC58     <---------ATHB12                  --------->AHL20(2)     --------->YAB1       ------ ---->ANAC58--------->GLK1(2) <---------LBD16----------->GT1   <---------ANAC58              --------   gtactaaagtaaagaatcaataaaccaatcaatccgcgagaaactcatggttatataatatttttgcttgaagtattcatagttgtcaaaagaataaaag  20516600               <------ZmHOX2a(1)             <---------TOE2(3)      --------->YAB1                <---------YAB1  --------->AHL20(2)        --------->YAB1           <---------LBD16 --------->AHL20(2)        --------->AHL20(2)        --------->At4g35610 <---------AHL20(2)     --------->AHL20(2)           <---------At4g35610<---------AHL20(2) ----->AHL20(2)--------->YAB1  <---------ICU4    --------->GLK1(2)  --------->ANAC58 ----->GT1   <---------TOE1(3)--------->ICU4---------->DOF2         --------->ANAC58 <------MYB46(1) -->DOF2--------->ZAT6 --------->AHL20(2) --------->TOE2(3)         ----------->GT1  <------MYB83   -   taaataaataatactaaggataacaataaataaaaattatcaaacctaaagaatcagcggagacattggcacgttaaattgtctatttggtgatgaagaa  20516700                              <------MYB46(1)                              <------MYB83                            --------->ALFIN1                       --------->MYB52(1)                       ------>MYB46(1)                       <---------LBD16               --------->ANAC55(2)                       ------>MYB83           <----------DOF2                     --------->TOE2(2)        <---------MYB52(1)                     --------->TOE1(2)    ------>NtERF2        <---------ARR11(3)          <------ZmHOX2a(1) <--------P   --------->ANAC58     <---------CCA1(2)   --------->WRKY45 <---------HSFB2a(1)  --------->ANAC58  <---------AHL20(2)   --------->WRKY38(1)--------->MYB52(1) --------->ANAC46 --------->AHL20(2)                  <------ -------->ALFIN1   ------->TEIL<---------ANAC46      <---------ANAC55(2)    --------------->AtSPL8  *TSS   gagtgttgactaggatagaagaacctacgggttgggcataaacccgccctttgttatgtattatatatctaagttctatttgtacatcttagttatttta  20516800                                                                --------->At5g28300                                                            --------->MYB52(1)                                                       <---------ICU4                                                       --------->YAB1                --------->GLK1(1)                        <---------ZAT18               --------->ICU4          <---------At4g35610      <<<<<<<<<TBF1     --------->ZAT18               <---------ATHB12    <----------DOF2 ---AHL20(2)  ------>ZmHOX2a(1)                     --------->WOX13(1)--------->GLK1(2)       <------   tgggcttcttcttctcctccatcgagcacacacatagaaaacaaacaatatgagcaatcatcaaacggtgagattccttttgctcacatttcccatcttt  20516900                                                                                     --------->YAB1                                                                                --------->AHL20(2)                                                       --------->YAB1           <---------AHL20(2)<--                                                      <---------YAB1       <---------MYB52(1)    <---                         --------->WRKY38(1)        --------->CCA1(2)     --------->LBD16     <------                         --------->WRKY12          <---------ARR14(2)  <---------At5g28300 --------->GLK1(2) ----DOF2       <-----------HVH21   <-----------GT1--------->ARR14(2) <-----------GT1----------->GT1   attttttatcttcaaaactatcagacgatgaccatttgaaaccccttgcgatggatatgatcactctccatattaccgtgattttaatcgtaaaatctga  20517000            --------->YAB1            <---------ICU4           <---------ATHB12      <-----------HVH21   --------->ANAC55(2)   <---------ANAC55(1)   <---------ANAC55(2)   <---------ANAC58                                                                   <---------ANAC58   <---------ANAC58                                                                   --------->ANAC55(2) <-----------GT1     <---------ANAC46       <---------YAB1              --------->AHL20(2) -------MYB46(3)     <---------ANAC58<---------ANAC58    --------->HSFC1(2)           <---------ANAC55(2) ------WOX13(1)      <---------ANAC58<---------ANAC58    <---------HSFC1(2)           <---------ANAC58 ---YAB1 --------->WOX13(1)      <----------DOF2 --------->YAB1         <---------AHL20(2)   ttgttacatgtcaatcatgtgtttcgtctgtctgtcttttcttggtatcaatgttaagtagcttcttatgtcattttaatctgcaattacttgatttttg  20517100                                                                      --------->HSFB2a(1)           <                                                                      --------->HSFC1(2)            <                                                                      <---------HSFC1(2)        -----                                                                      --------->At4g35610      <-----                                                                      --------->ZAT2          -------                                                                      <---------At4g35610     <------                                                                    =================================                                                                    =================================                                                                    <------ZmHOX2a(1)         -------                                                 ---------->DOF2 <-----------RAV1(2)          -------                                             <----------ID1   ----------->HVH21               <------                                     --------->ZAT18      <---------ANAC58  =========================                     --------->At4g35610   ---------->DOF2<---------ANAC58  =========================              <---------REM1(1)      <---------ZAT14    <---------ARR14(2)  =========================           --------->ALFIN1          <---------ZAT18  <---------MYB46(3)    ------>ZmHOX2a(1)<-------       <-----------RAV1(2)        <---------ANAC46   --------->ALFIN1 <---------HSFB2a(1)    --------   gatttttaagcaggtgttgaagcagttggagccatggtgtgaacttaaagacaaagtggttcttgtgacaggagcttcctctggtattggaagagagatc  20517200      ------>ZmHOX2a(2)    <---------ARR11(3)    --------->ARR11(3) ---------ANAC58 ---------ANAC58 ->ZmHOX2a(2) -ZmHOX2a(2) -->ARR11(3) ---ARR14(2) =HOX2a_HOX2a ==HOX2a_HOX2a -->ARR14(2)        <--------P         <---------At4g35610 -->AGP1           <-------GAMYB       --------->At4g35610 ---ARR11(3)---------->DOF2            --------->ZAT2 ============HOX2a_HOX2a<-----------RAV1(2)  <---------ANAC46         <---------ZAT14 =HOX2a_HOX2a     <---------MYB46(3)   <---------ZAT2                 --------->ZAT14 ==HOX2a_HOX2a <---------ZAT2       --------->At4g35610           XXXXXXXXXXXXXXXXXXXX>MIR859 --GLK1(1)----------------->AGL1    <---------ZAT2    ------>ZmHOX2a(2)              --------->At4g35610 ->GLK1(1)----------------->AG      <---------At4g35610  --------->ANAC46    --------->GLK1(1)   tgtcttgatcttgccaaagctggttgccaggttattgcagcagctcgtcgtgttgatcgactcaactctctctgctctgaaatcaacagcttcagttcaa  20517300  Previous    Next  AGI:  At3g55310.1    Description:  oxidoreductase. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.2); similar to unknown [Populus trichocarpa] (GB:ABK93994.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20516800    to: 20518002    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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