Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------TOE2(3)                                                                        ---------->DOF2                                                                <---------YAB1                                                              --------->ATHB51                                                              --------->YAB1                                                              --------->AHL20(2)                                                              <---------ICU4                                                              <--------HAHB4                                                              -------->ATHB1                                                              <---------AHL20(2)                                                             <---------ATHB51                                                             <---------ATHB12               ---------             <---------AHL20(2)                              --------->ICU4     <---------AHL20(2)           <---------YAB1                                 <---------AHL20(2)    <---------YAB1-------          <---------AHL20(1)                        --------->YAB1<---------AHL20(2)    --------->ZAT6          <---------AHL20(2)                       <---------ATHB51<---------AHL20(2)  <---------YAB1 ---------AHL20(2)                    --------->YAB1--------->AHL20(2)<---------YAB1<---------AHL20(2) -------->AHL20(2)       <-----------GT1           <---------ATHB12<---------YAB1   --------->AHL20(2)   ttttaaatgtattattttttttgtgttttacaattttctataattttaaaccaataatattcaattatttttattaaagtttataatttatcagtaataa  20513200                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                               <-----                   --------->GLK1(2)                             --------->AHL20(2)            ------  <---------ICU4   --------->ARR11(3)                          ------------------------>ANAC81 <-----  <---------AHL20(2)                                <<<<<<<<<<GT-3b                            ------ --------->AHL20(2)<---------ARR11(3)            <---------AHL20(1)                      --------->ARR14(2) <---------ATHB12 --------->RVE1(1)              --------->ARR11(3)      ---------->DOF2 <---------ARR11(3) >YAB1          --------->AHL20(2)               --------->AHL20(1)   --------->AHL20(2) <---------ARR14(2) -->ICU4----------->GT1        --------->WOX13(1)<---------ARR11(3)  --------->AHL20(2)  --------->GLK1(2)   ctaataaatattgtataaaaaaatctaaaaaatcaatcttcttgaaacaaatatttttcttagaaaatcaaataaaaaagaacagatggagtatctatat  20513300      --------->YAB1   ---------->DOF2   --------->YAB1                                          <---------HSFB2a(2)      --------->ARR14(2) -------->YAB1                  <---------MYB59--------->ANAC58                     <---------AGP1 ------>AHL20(2)                --------->TOE2(3)          --------->HSFB2a(2)      <---------ARR14(2) -------AHL20(2)        --------->YAB1         --------->ANAC46            <---------AHL20(2) ----ARR11(3)      --------->AHL20(2)          --------->ANAC58        ----------->GT1------>ZmHOX2a(2) --->AHL20(2)      <---------AHL20(2)         <---------TOE1(2)        --------->ANAC58 ----AHL20(1)  --------->AHL20(2)             --------->LBD16<<<<<<<<<<<<<<<<<LFY --------->ETT(2) --->AHL20(1) --------->AHL20(2)--------->TOE1(3) --------->GLK1(2)    --------->ANAC58   attaataaagataacaataaataaaatcatcaaacctaaattgtttcccacgaatcagtttcgagacattggcacgttaaattgtcgatctggtaatgaa  20513400                                                                                 <---------TGA1a                                                                                 <---------bZIP60(2)                                                                                 <---------O2                                                                                 --------->TGA1a                                                                                 <---------ANAC58                                                                                 --------->ANAC55(2)                                  <------ZmHOX2a(1)                              ====================                        <---------ZAT6                                           <---------ANAC46                        ----------->GT1                                          <---------ANAC58                    <---------ZAT14                --------->CCA1(2)          ----------->HVH21               <---------ZAT18  --------->MYB59   --------->ARR14(2) <----------DOF2               --------->ZAT18 <---------ICU4     <---------ARR14(2) ======================bZIP_DOF   <----------DOF2  ---------->DOF2               <---------GLK1(2)  ------>ZmHOX2a(1)            ---   gtaggctttacatgtagtagactaaagtgttaattaggacctagaccctacagatttgggcataaaccgtcctttgttatgggacgtgttctacttggta  20513500        --------->LBD16       --------->DEAR3(1)      --------->MYB46(3)    <---------ARR14(2)                 <----------DOF2    <<<<<<<ZML2                     <---------ARR11(3)    --------->ARR14(2)              --------->ARR11(3) <---------HSFB2a(2)               <---------CCA1(2) --------->HSFB2a(2)       <------ZmHOX2a(2)                                         ------>ZmHOX2a(1) --------->HSFC1(1)  --------->At4g35610                <---------AHL20(2)    <---------ANAC58 <---------HSFC1(1)  <---------At4g35610                --------->AHL20(2)    <---------ANAC58 ========================bZIP_DOF--------->AHL20(2)     <-----------TBP  <------------CBF ------>ZAT6  <----------DOF2  <---------GLK1(2)      <-----------TBP  <---------AHL20(2)*TSS   tctctagaaccgcggtctttggcagatggatcagattatatctttttgacacttgtatttatatatgttatatgttattggcttctccttccccattggc  20513600          --------->ZAT14          <---------ZAT14         --------->AtMYB61         <---------ALFIN1        --------->ANAC46        --------->ANAC58                    <-----------HVH21        --------->ANAC58           --------->YAB1      --------->ANAC58             <---------ICU4      --------->ANAC58            <---------ATHB12      --------->ANAC46            --------->ICU4                              <----------DOF2    <---------ALFIN1            --------->WOX13(1)                        <----------DOF2   catcgaacacaccacacagagaaaacaatatgagcaatcatcaaactgtgagataacattttctctcatttcccatctttctttttatcttcaaaactat  20513700                                                  --------->AHL20(2)                                                <----------DOF2                                               --------->TOE2(3)          <---------AHL20(2)                <-----------GT1                <-----------GT1          --------->AHL20(2)            <----------DOF2    <---------GLK1(1)      <---------YAB1      --------------->AGL15      <---------At5g28300    <---------YAB1   <----------DOF2   <-----------GT1              <-----------GT1--------->TOE1(3) <---------MYB52(1)          --------   tcatataaccatttatataagaccactctccaaattaccatgcttttaacctttaaatatgatttctgttatcttctttaccatatgattccatatggaa  20513800                                       <---------ANAC55(2)                                       <---------ANAC58                                       <---------ANAC58                                       --------->ANAC55(2)                            <---------REM1(1)        --------->YAB1               <-----------GT1                           <-----------RAV1(2)       <---------ATHB12      --------->At4g35610                            --------->DAG2     --------->WOX13(1)      <---------At4g35610                   <---------LBD16 --------->ALFIN1 --->GT1<---------ICU4<----------DOF2<---------AHL20(2)  ---------->ID1    ---------->DOF2   aaattgtcaatcatgtgtttttgtctttgtaatctgaaattacttgatttttgtattttgttttttttttgggggagaaaagcaggtgttgaagctattg  20513900                                                                              ------>ZmHOX2a(2)                                                                            --------->ARR11(3)                                                                            <---------ARR11(3)                                          <---------At4g35610           <---------ANAC58                                          --------->At4g35610           <---------ANAC58                                          --------->ZAT2            ------>ZmHOX2a(2)                                          <---------HSFC1(2)       <------ZmHOX2a(2)                                          --------->HSFC1(2)      --------->AGP1                                          --------->HSFB2a(1)     --------->ARR11(3)                                        ==================================HOX2a_HOX2a                                        <------ZmHOX2a(1)         <---------ARR11(3)                                        ===================================HOX2a_HOX2a      <--------P                     ---------->DOF2 <-----------RAV1(2)          --------->ARR14(2)       <-------GAMYB                 <----------ID1   ----------->HVH21               <---------ARR14(2)---------->DOF2               ---------->DOF2<---------ANAC58  ------>ZmHOX2a(1)--------->GLK1(1)----------------->AG         <---------ZAT18      <---------ANAC58  =====================================HOX2a_HOX2a<----         <---------ZAT14    <---------ARR14(2)  ===========================HOX2a_HOX2a    <---------MYB46(3)         --------->ZAT18  <---------MYB46(3)    ==========================HOX2a_HOX2a  <---------ZAT2      <---------ANAC46   --------->ALFIN1 <---------HSFB2a(1)    <---------GLK1(1)----------------->AGL1   gagccatggtgtgaacttaaagacaaagtggttcttgtgacaggagcttcctctggtattggaagagagatctgtcttgatcttgccaaagctggttgcc  20514000                                                                                       --------->ARR11(3)                                                                                      --------->ZAT2                                                                                      <---------ZAT2                                                                                      <---------At4g35610                                                                                      --------->At4g35610           <---------ZAT2                                                           <------NtERF2           --------->At4g35610                                                      <---------ALFIN1           <---------At4g35610                                                     --------->LBD16           --------->ZAT2                 <---------ZAT14                         --------->DEAR3(1)        --------->At4g35610               --------->ZAT14                         --------->RAP2.6(2)        <---------At4g35610  --------->ANAC46            --------->At4g35610   --------->ANAC46        <---------ZAT2    ------>ZmHOX2a(2)      --------->GLK1(1)             --------->ANAC58 -------RAV1(2)  <---------ANAC46     XXXXXXXXXXXXXXXXXXXX>MIR859              --------->ANAC58   aggttattgcagcagctcgtcgtgttgatcgactcaactctctctgctctgaaatcaacagcttcagttcaactggaatccaagccgcagctcttgagtt  20514100  Previous    Next  AGI:  At3g55290.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G55310.1); similar to unknown [Populus trichocarpa] (GB:ABK93994.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20513589    to: 20514774    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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