Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ALFIN1                                                                             <---------------AtSPL3                                                                            =========================                                                                            <---------TGA1a                   ---------->DOF2                                          <---------ANAC55(1)               <---------------AGL15                                        <---------bZIP60(2)               --------------->AGL15                                        <---------O2              ----------------->AGL3                                        <---------ANAC46              --------->ANAC58                                              <---------ANAC58              <-----------------AGL1                                        <---------ANAC58              <-----------------AGL3   --------->YAB1                       --------->O2              --------->ANAC58        <---------ATHB12                   ----------->HVH21             ------->TEIL--------->ANAC58                              <---------ANAC58          --------->ANAC46           ------>MYB46(1)                   <---------ANAC58          --------->ANAC58           ------>MYB83                     --------->STY1(2)     <--------          --------->ANAC58          --------->WOX13(1)               ------>MYB46(1)      --------->ATHB12     --------->HSFB2a(2) --------->ANAC58                            ------>MYB83------->TEIL   taaacttctcaaacgcacctaaaaaggaagcaaaaaaccaatcataagattgaaaacaagacgattaaacctagcttgacgtgtacgtttagtaattggt  20442000                            --------->ANAC55(2)                            --------->ANAC58                            --------->ANAC55(1)           ------>ZmHOX2a(1)                 --------->WRKY38(1)                     <---------ALFIN1                 ----------->HVH21                   <---------At4g35610                <---------MYB52(1)                <---------MYB52(1) ---------->ID1            <---------At5g28300                 <---------YAB1       <-----------GT1            --------->MYB52(1)    --------->MYB52(1) --------->At4g35610      --------->O2            <---------DOF5.7(2)   <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ---------->DOF2       --------->ANAC58 --------->GLK1(2)      <-----------GT1             ----- ================bZIP_DOF   --------->ANAC46<---------GLK1(2) <---------MYB52(1)----------->HVH21   < -WOX13(1) <-----------GT1 <---------LBD16----------->ARR10  --------->LBD16<---------ALFIN1    -----   gtttataagaaagttaccggtgactatttcacggaagaacgggatagattctgttagctcctccgtagtttttcccttccacttgacagatagagaagga  20442100                                                                            <---------ANAC46                                        --------->ANAC58                    <---------ANAC58                                        --------->ANAC58                    <---------ANAC58                                     <------ZmHOX2a(2)                   --------->TOE2(2)                              --------->At5g28300                       ----------->RAV1(2)                            <---------ANAC46                            <---------ZAT2                            <---------DEAR3(1)                        <---------ALFIN1                         ----------->HVH21                         ----------->HVH21                         <---------ATHB12      <---------At5g28300--------->TOE2(1)   --------->DOF5.7(2)   ----------->TGA1  ------->TEIL           --------->TOE1(1)        --------->ANAC58 ---->ARR14(2)     --------->ANAC46 <---------ARR11(3) <---------GLK1(1)<---------At4g35610--------->ANAC46 ---------------------WRI1--------->MYB52(1)  <-----------GT1    <------NtERF2           --------->MYB52(1) ---->MYB52(1)  --------->ARR14(2)  --------->ARR11(3) --------->GLK1(1)--------->At4g35610--------->ANAC58   acggcgttaccctctaggtatactccaatgacggtgaagatcacgaatttaccttggatatcaaggcctcggacacctgcgtaagttagcaaaacggaac  20442200                                                                <------NtERF2                                                                --------->ATERF1(1)                                                               <---------ATERF1(1)                                                               --------->ABI4(1)                                                               ------>NtERF2                                                              --------->RAP2.3(2)                                                              --------->RAP2.3(3)                                                              --------->RRTF1(3)                                                              --------->RRTF1(2)                                                              --------->DEAR3(1)                                                              <---------ATERF1(2)                                                              --------->ATERF1(2)                                                              <---------DEAR3(1)                                                             --------->RAP2.3(1)                                                             --------->DEAR4(2)                                                             <---------ABI4(2)                                                             --------->ERF1                                                             --------->DEAR3(2)                                                             --------->RRTF1(1)                                                             <------NtERF2                                                             --------->ATERF1(1)                                                             --------->ORA47(2)                                                             --------->RAP2.6(1)                                                            <---------ATERF1(1)                                                            <---------RRTF1(1)                                                            --------->ABI4(2)                                                            ------>NtERF2                                                            <---------ORA47(2)                                                            <---------RAP2.6(1)                                                            <---------DEAR4(2)                                                            <---------RAP2.3(1)                                                            <---------ERF1                                                           <---------DEAR3(1)                                                           --------->DEAR3(1)                                                           <---------RAP2.3(2)                                                          --------->RAP2.3(1)                                                          --------->ATERF1(1)                      --                                                          --------->RRTF1(1)                      ---                                                          --------->ERF1                        <----                                                          --------->RAP2.6(1)                   <----                                                         <---------DEAR4(2)                     <----                                                         <---------ATERF1(1)                 --------                                                        --------->DEAR3(1)                  <--------                                                       --------->MYB46(3)                   <--------                                                       --------->DEAR3(2)                  <---------ATERF1(1)                                                      --------->MYB52(1)                   ----------                                                      ------->TEIL       --------->MYB52(1)<---------At4g35610                      ------------------------>ANAC81--------->MYB52(1) --------->ICU4     --------->At4g35610                 ---------->DOF2                   <---------MYB52(2)   <---------ATHB51   <---------DEAR3(2)          --------->ANAC46                       --------->MYB52(1)  <------ZmHOX2a(1)    <---------DEAR3(1)      ----------->RAV1(1)                       --------->TOE1(2) ------>NtERF2          <---------ORA47(1)    <---------At4g35610      ---------->DOF2   <---------MYB52(2) --------->LBD16    --------->ATERF1(1)    --------->At4g35610    --------->ARR11(3)  --------->MYB46(3)--------->DEAR3(1)  <------ZmHOX2a(1)   gtagtcagcaacacgaagaaaaagaagaagataaagaagaacagagcaaacaaacgaaccggcgccgccgaggaataatggattggaggaggccggtgac  20442300                                                   --------->MYB52(1)                                                <------NtERF2                                               <---------MYB46(3)                                               --------->LBD16                                               ------>NtERF2                                              <---------ANAC46                                              <---------DEAR3(1)                                              --------->ALFIN1                                             <---------LBD16                                             --------->ATERF1(1)                                            <---------RRTF1(1)                                            <---------RAP2.3(1)                                            ------>NtERF2                                            <---------ERF1                                           <---------O2                                           <---------bZIP60(1)                                           <---------ANAC46                                           <---------DEAR3(1)                                           <---------RAP2.3(3)                                           <---------RRTF1(2)                                           <---------RAP2.3(2)       --------->At5g28300                 <---------RRTF1(3)      ----------->GT1                      <---------RAP2.6(2)     --------->ANAC58                      --------->ATERF1(2)     --------->ANAC58                      <---------ATERF1(2)    --------->SPL7 <---------ANAC46       --------->RAP2.6(3)  <---------SPL7----------->TGA1        ----------->HVH21             --------->DEAR3(1) ------->MYB52(1)--------->MYB52(1)     ----------->TGA1             <-----------RAV1(2)            < -------->HVH21 ----------->HVH21      <-----------HVH21             <------NtERF2                 <- -----ANAC58   <-----------HVH21      <---------ANAC58               --------->ATERF1(1)          <-- -----O2      --------->O2            <---------ANAC58              <---------ATERF1(1)           <-- -----ANAC58  <---------TGA1a         <---------ANAC46  ----------->TGA1                          <-- --->HVH21    --------->ANAC55(2)    <-------TEIL <---------SPL7--------->ALFIN1     --------->ARR11(3) ---HVH21     <---------O2        <---------HSFC1(2)    ----------->HVH21<---------ANAC58         --- -MYB52(1)    --------->TGA1a     --------->HSFC1(2)   <-----------HVH21 <---------ANAC58         <-- ->GT1<---------DEAR3(2)         ------->TEIL<------NtERF2 <---------ANAC46  <---------MYB46(3)  <---   ttgacggacggtacaaacgtgacggagtctacatgaagcttcgtgacggcggggaacggtgacggagaggcgcaggcgttggatgaagacattgttgagt  20442400                                                                                                <----                                                                                                -----         <---------YAB1                                                                    ----------     <---------GLK1(1)                                                                 <------MYB46(1)  <------MYB83                                                                         <------MYB83<-  <------MYB46(1)                                                                     <---------AtMYB61 --------P           <---------TOE2(3)                                                <---------MYB46(3) ------GAMYB        --------->YAB1                                                    --------->MYB111(2) -------DEAR3(2)    <---------ICU4             *TSS                                   --------->MYB59 -------MYB46(3)   --------->ICU4       --------->ATHB12                              --------->MYB46(2) ----MYB83  <---------WOX13(1)         <---------YAB1           <-------GAMYB         --------->MYB55(2) ------>MYB55(2) --------->YAB1      <---------ANAC58     <----------DOF2             --------->MYB111(1) ----MYB46(1) --------->YAB1         <---------ANAC58    <----------DOF2             <--------P------ ------DEAR3(1) <---------YAB1   <----------DOF2       ------>NtERF2                 <---------MYB55(1)   cggttggaatttcgattgataataatgttacagagcttttcttgattgtgtttttggggcctttggggttaagtagaagagagaagggtaggtagcaata  20442500                                      <---------ANAC58                                      <---------ANAC58                             ------->MYC3                             <-------PIF4                             ------->MYC4                             ------->MYC2                             <-------PIF5                             <-------MYC3                             <-------MYC4                             <-------MYC2                             ------->PIF4       <---------ANAC55(1)   ------->PIF5       <---------YAB1       <---------ANAC55(2)       <---------ANAC58     <---------ANAC46  ---------->ID1               <-------TEIL <---------YAB1         --------->ANAC58    <---------ANAC58            --------->GLK1(1) --------->MYB55(2) -----ICU4 --------->ALFIN1------------>OsbHLH66                        <---------At4g35610 ---->YAB1 <---------ZAT6 <------------OsbHLH66                         --------->At4g35610<-------GAMYB -->CBF<---------ANAC58 --------->ANAC58    <---------ANAC58    --------->ATHB12          <---------MYB46(3) ----------GT1 <---------MYB46(3)  <----------DOF2<----------DOF2 <---------WOX13(1)     <---------AtMYB61 --->ICU4  <-----------RAV1(1)   ------->TEIL <---------CCA1(2)<---------YAB1   --------->YAB1     <-   gttacgattacgagtgttggatgtgtaagcacgtgtactttcgttttcgtctctttttttatattttgattgggagatgcattgacaattggtggttgaa  20442600                                                              <----------DOF2                                                            <---------YAB1                                                           <---------ARR11(3)                                                         --------->DOF5.7(2)                                                         <---------MYB52(1)                                 --------->YAB1         --------->TOE2(3)         --------->AHL20(1)                                 <------ZmHOX2a(1)     --------->YAB1         <---------AHL20(2)                                ----------->GT1  <-----------GT1             --------->AHL20(2)                               --------->MYB59<---------ARR11(3)      --------->ATHB12            <--                     <---------ZAT18          <---------AHL20(1)     <---------YAB1<---------AHL20(2)                     <---------ZAT14          --------->AHL20(1)     <---------AHL20(2) <---------TOE2(3) ---------DOF2       --------->ZAT14          --------->ARR11(3) --------->YAB1   <---------AHL20(1)   gctttgagcccttaaatatgcagagcacatagttaggataatttcaaatattttctatcgttatctttcatattattgattttatatattttggttattt  20442700                                                      <---------AHL20(2)                                                      <---------AHL20(1)                                                      --------->AHL20(2)                                                      --------->AHL20(1)                                                     <---------AHL20(2)                                                     --------->AHL20(2)                                                 <---------YAB1             --------->WOX13(1)                                               --------->YAB1              <---------AHL20(2)            <---------YAB1                    <---------AHL20(2)           --------->AHL20(2)         <---------YAB1                       <---------YAB1              <---------AHL20(2)     <---------AHL20(2)                    <---------AHL20(2)             --------->AHL20(2)     --------->AHL20(2)                    --------->AHL20(1)         <---------YAB1     --------->YAB1                        --------->AHL20(2)       --------->YAB1    <---------YAB1                         <---------AHL20(1)      <---------YAB1 --------->ICU4                           --------->AHL20(2)    <---------AHL20(2) -------TOE2(3)<---------YAB1             --------->YAB1        --------->AHL20(2)      <----------DOF2   gagataattatatgattattttagagtttatctaggtttttgaattatattataaataaattgagttttattataaataaatcaggttttcttttgtatt  20442800                     --------->AHL20(2)                     <---------AHL20(2)                    <---------AHL20(2)                    --------->YAB1                    <---------AHL20(1)                    --------->ARR14(2)           <---------WOX13(1)                        ---------->DOF2         <---------HSFB2a(2)         --------->ATHB12           --------->AHL20(2)--------->DAG2         --------->HSFB2a(2)       <---------MYB52(1)<---------AHL20(2) <----------DOF2                 <---------LBD16      <-------GAMYB --------->AHL20(2)     <---------ANAC58               <----------DOF2         ---      <---------At4g35610--------->AHL20(2)<---------ANAC58         <---------ICU4    ---------->DOF2   cagtattcagttgattgatcaataaaattaaaaaaaaaaaaaatagcttttcagaaaaagtattctctaattcttactttcggaaaatcaaagaaaaaat  20442900  Previous    Next  AGI:  At3g55120.1    Description:  A11/CFI/TT5 (TRANSPARENT TESTA 5); chalcone isomerase. Identical to Chalcone--flavonone isomerase 1 (CHI1) [Arabidopsis Thaliana] (GB:P41088;GB:Q8W532;GB:Q9LE13;GB:Q9LF74;GB:Q9LF75); similar to chalcone isomerase [Arabidopsis thaliana] (TAIR:AT5G66220.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:Q9LKC3); contains InterPro domain Chalcone isomerase; (InterPro:IPR003466); contains InterPro domain Chalcone isomerase-like (InterPro:IPR016087); contains InterPro domain Chalcone isomerase, 3-layer sandwich; (InterPro:IPR016088) Range:  from: 20441091    to: 20442447    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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