Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->YAB1                                                      --------->YAB1                                                 <---------ANAC55(2)                                                 <------MYB83 <------ZmHOX2a(2)---------->DOF2                                                 <------MYB46(1)             <---------YAB1                                                 ----------->GT1         <---------AHL20(1)                                                --------->MYB111(1)      --------->AHL20(1)                                                --------->MYB59          <---------AHL20(2)                                          <---------------AGL15          --------->ARR11(3)         --------->YAB1                  <-----------------AG ==============HOX2a_HOX2a             <     <---------AtLEC2                --------->YAB1 <---------KAN4(2)------>ZmHOX2a(1)        -------   tttttttgcattgatactttggccatattttagttttactcataacatattaggtataatcacgatcagtcctaatattttgaaagcccaaaaaaaaaaa  20418900                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                                      --------->CCA1(1)                                                             --------->YAB1                                                             <--------HAHB4                                                             <--------ATHB1                                                             -------->HAHB4                                                             <---------ICU4          <---------AHL20(1)                                 --------->AHL20(2)          --------->ATHB51        <---------AHL20(2)                                 <---------AHL20(2)         --------->AHL20(2)       --------->ARR11(3)                          --------->At5g28300               <---------YAB1           --------->AHL20(1)                         ----------->GT1        --------->DAG2  <---------AHL20(2) <---------TOE2(3)                    <-----------GT1            ---------->DOF2  --------->AHL20(2)--------->AHL20(2)            <---------RVE1(1)   <---------AHL20(2)          --------->ICU4        <---------AHL20(2)            <---------CCA1(1)   <---------AHL20(1)          <---------ATHB51      --------->YAB1           <---------ARR11(3)   --------->AHL20(1)        --------->YAB1        <---------AHL20(2) ----------DOF2 <---------AHL20(2)      ----------->GT1  <---------AHL20(2)     --------->AHL20(2) --->DOF2  --------->ARR11(3)   --------->AHL20(2) ----------->GT1    --------->RVE1(1)            --   gactttattttgagatattttttcacaaggtaaatttaatttcagtaaaaaaagggtttttaataattaaaaatatctgtatattaatattttgtataga  20419000                         --------->GLK1(2)                         --------->ARR14(2)                         <---------ARR14(2)             --------->YAB1          --------->WOX13(1)        <---------AHL20(2)   ------>ZmHOX2a(1)             --------->TOE1(1)     --------->AHL20(1) <---------GLK1(1)              ------->TEIL <------ZmHOX2a(2)          ------     <---------AHL20(1) --------->GLK1(1)         ----------->RAV1(2)                      <--------- --------->GT1   --------->DAG2     <---------YAB1--------->At4g35610        --------->At4g35610   ctagttatatattaatcaaaaattgggaatcctagactatttttgtttcatcaactggacctggtactggatcaaacgttgctgcaaactaaaatgacaa  20419100                                                          <----------DOF2                                                       -------->P                                                       ------>MYB83                                 -                                                       ------>MYB46(1)                             --                                                      ------>ZmHOX2a(1)                            --                                               <---------DEAR3(2)                                 ---                                             --------->SPL7                                       <--                                            --------->MYB52(1)                                    <--                                    <------ZmHOX2a(2)<---------MYB59                          <------                        <---------MYB52(1) ----------->HVH21                          <-------------- ---->DOF2             <-----------HVH21   <---------SPL7<---------DAG2               --------------- -ID1   --------->YAB1 <-------GAMYB=========================HOX2a_HOX2a              <--------------   agcccaaaaatcaaaacatactctcggttagggattagatcagaccggacggtttcctaccttttcaaacgctgtcgttttgaactatagagtaccacaa  20419200       <------NtERF2      ------>NtERF2     --------->ANAC46     <---------DEAR3(1)     --------->DEAR3(1)   ------->GAMYB  --------->MYB46(3)  ----------->HVH21                                                                ----------->RAV1(1) ------>MYB46(1)                                                                  --------->AtMYB61 ------>MYB83                                                                     <---------ALFIN1 -------->MYB52(1)                                                                --------->ANAC46 ------->TOE2(2)                                                                 --------->MYB46(3) ------->TOE1(2)                                                              <------ZmHOX2a(2) ----- ------>MYB46(3)                                                             <---------ARR11(3) <---- -------MYB52(2)                                                             --------->ARR11(3) <---- -------MYB55(2)                                                         --------->YAB1   ----------- ---MYB52(2)               --------->AHL20(2)                           <---------ATHB12 --------->ANAC58 -AtSPL3                  --------->AHL20(2)                          --------->WOX13(1) --------->ANAC46 >AtSPL8       <---------O2<---------AHL20(2)  <-----------GT1 *TSS <---------ATHB12     --------->ANAC58 -AtSPL8   <-----------HVH21      <------------------------ANAC81 --------->WOX13(1) --------->AtMYB61   accaacgacgccgtttcacttggcactatttatttcttctgtagttttttttcttctcatacatatatcaatcaatcaagatcaccaccacaaggcaaaa  20419300                                                                            <---------GLK1(2)                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                          ------->GAMYB                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                       --------->MYB52(1)                                                                      --------->DEAR3(1)                                                                      --------->AtMYB61             -                                                                      --------->MYB46(3)            -                                                                     --------->MYB46(3)         <----                                                                     <---------MYB52(2)         -----                                                                    ------>NtERF2              ------                                                                 ------>NtERF2                -------                                                                 --------->LBD16             --------                                                                --------->ANAC46             --------                                                       --------->GLK1(1)------>MYB83      <---------MYB52(1) ---->GLK1(2)                                      --------->AtLEC2--------->DEAR3(1)    <-----------TGA1 -------ARR10                      ------>ZmHOX2a(1)   <---------GLK1(1)------>MYB46(1)  <-----------HVH21 -----ARR11(3)        <---------At4g35610   <---------ANAC58 <---------ARR14(2)         --------->DEAR3(1) >GT1                 --------->At4g35610   <---------ANAC58 --------->ARR14(2)   ----------->HVH21 <   tctaaactctctctgcaaaatttctgctaacttcttcctcccattttcttgccatggaaatcgattccgccaccaacggaaactctgacaccgtcatgac  20419400       --------->At4g35610       ------>NtERF2       <---------At4g35610                                                                      -----      --------->RAP2.6(2)                                                                      >>>>>>      --------->DEAR3(1)                                                                       >>>>>>      --------->RAP2.3(2)                                                                      ------      --------->RRTF1(3)      <---------MYB46(3)                                               >>>>>>     --------->RAP2.3(1)      <---------DEAR3(1)                                               >>>>>>    ------>NtERF2            --------->SPL7                   --------->ANAC55(2)              ------    --------->LBD16         <---------MYB52(1)                <---------ANAC55(2)            <-------   --------->ANAC46      --------->ATERF1(1)                  --------->ANAC58              ------>ZmHOX2a(1) -------->ARR14(2)       <------NtERF2                        --------->ANAC58             <---------ALFIN1 -------->GLK1(2)       ------>NtERF2                         --------->ANAC46          --------->ARR14(2) -----ANAC55(2)         <---------RAP2.3(1)                  <---------LBD16            <---------ARR14(2) ---->ANAC55(2)        <---------DEAR3(1)                   --------->MYB52(1)         --------->ZAT2 --->RAP2.6(3)         --------->DEAR3(1)                   <-----------GT1            <---------At4g35610 -->MYB52(1)          --------->ATERF1(1)             <---------ATHB12                 <---------ZAT2 --->HVH21           <---------ATERF1(1)         <------ZmHOX2a(2)--------->GLK1(2)    --------->At4g35610 --->TGA1     <------ZmHOX2a(2) <------NtERF2<---------HSFB2a(2) --------->ARR14(2)  <---------ALFIN1 ---------ARR14(2)   <-----------HVH21       --------->HSFB2a(2) <---------GLK1(2) ----------->RAV1(1)   ggaatccgccgctacgatcactccgtcgccggtcgtcgtctcgtcttcgagatcgaatcaatttacggaatctctcaagcttgagcaccagctcctccgc  20419500                                         <---------MYB52(1)                                     <---------At5g28300                                    --------->YAB1                                   --------->MYB46(3)                                   <---------ATHB12                                   <---------MYB55(2)                                  ------>MYB83                                  ------>MYB46(1)                               <---------DEAR3(1)                                 --------->WOX13(1)                            <------NtERF2                              --------->SPL7                                   --------->ATERF1(1)  <----------DOF2           <---------SPL7                                    <-----------HVH21 <---------ANAC58          --------->ANAC55(2)                                ------>NtERF2 <---------ANAC58          <---------ANAC58                                  <---------ANAC46 --------->OsCBT           <---------ANAC58                                  <---------DEAR3(1) >>>>CAMTA5                <---------ANAC55(2)                  --------->MYB46(3)<------NtERF2 >>>>CAMTA1               --------------->AtSPL3   ---------->DOF2           --------->DEAR3(1) --->LBD16                --------------->AtSPL8<---------HSFC1(1)         ------->GAMYB >>>>CAMTA3               ------>ZmHOX2a(2)     <---------HSFB2a(2)     --------->MYB52(1) >>>>CAMTA2              <------ZmHOX2a(2)      --------->HSFB2a(2)     <---------DOF5.7(2) >NtERF2                --------->ARR14(2)      --------->HSFC1(1)    --------->DOF5.7(2)           < --LBD16                <---------ARR14(2)  <----------DOF2     <---------ATHB12<---------ANAC46  <--   gttcctttcgagcattacaagaagacgatccgtaccaatcaccgttctttcgagaaagaggtctcaaccattgttaacggcgtcggagaattggctgatt  20419600                                      <---------ANAC58                          <-----------GT1                                      <---------ANAC58                         <-----------GT1        ---------->DOF2          <---------ANAC58                       <--------P   <------MYB83         <---------ANAC58                              ----------->GT1   <------MYB46(1)      <---------ANAC46                             --------->DAG2 <---------CCA1(2)  <---------AtMYB61     <---------ANAC58                         --------->ANAC58 <---------ANAC58 ---------MYB52(1)   <---------MYB52(1)    <-----------GT1       --------->ANAC58 <---------ANAC58 -------YAB1   <---------ARR14(2)<---------ANAC58           <------NtERF2<-------TEIL             ---   ccgattggtctaaagacgataccgtttcgcgtcttacttgccttgttactcgattacaaggcctcaaacgaaaggttgatttttccgtctctctccctct  20419700                                                    <---------TOE2(3)                                      <---------AHL20(1)                                      <---------AHL20(2)                                            -                       --------->ANAC46            ---------->DOF2                                  <           --------->AHL20(2)         --------->AHL20(2)                   --------->GLK1(1) <-------           <---------AHL20(2)      --------->WOX13(1)   --------->GLK1(2)  <---------GLK1(1) <-------  ------>ZmHOX2a(2)    --------->ANAC58<---------AHL20(2)                 --------->ARR11(3) -------- -------->HVH21        --------->ANAC58--------->AHL20(2)  <---------YAB1--------->YAB1----------->GT1   gtgatcggtgttttaaattatgtagacgaaactgaatcaattaatttagcgattaaagtttctgattttgctaaatgatatccacttatctgtaaaaaat  20419800  Previous    Next  AGI:  At3g55070.1    Description:  similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41552.1); contains InterPro domain CT11-RanBPM (InterPro:IPR013144); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain CTLH, C-terminal to LisH motif (InterPro:IPR006595) Range:  from: 20419263    to: 20422117    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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