Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->At5g28300                                ----------->GT1                               ----------->GT1                     --------->ANAC58                          --------->ANAC58              ----------->GT1  --------->DAG2           ---                    <------ZmHOX2a(1)                  <---------------AtSPL8              <------MYB46(1)             <---------ZAT14---------->DOF2    ------->TEIL<-------TEIL ---------->DOF2    <------MYB83          <---------ZAT6  --------->ANAC58  --------->ANAC46       --------->ANAC58      <--------P   agtagaatggtagtctgaactaggaatcaagaaagggtaaatgtaaacgaagcttgaatggtacatagcaaggaaaaaggaatatgaacaagttggttta  20355700                                                                                    ---------->DOF2                                                                                --------->YAB1                                                                             ------>MYB46(1)                                                                            <---------ALFIN1                                                                         --------->PCF2                                                                       --------->WRKY12          <---                                     --------->ALFIN1        --------->ZAT6--------->MYB46(3)   -----          *TSS                   ---------->DOF2             <---------ALFIN1------>MYB83   <--------    --------->ARR11(3)       --------->ANAC58              <<<<<<<<<<<<<<<<<LFY<---------ATHB12------    --------->ARR14(2)       --------->ANAC58      <---------MYB52(1)  ----------->HVH21   --------->SPL7    <---------ARR11(3)       <----------ID1       <-------GAMYB       <---------MYB52(2) <---------SPL7    <---------ARR14(2)      --------->SPL7    <---------ALFIN1       --------->At4g35610<---------ANAC58 ------>YAB1           --------->At4g35610   ------>ZmHOX2a(1)       <---------At4g35610<---------ANAC58   tcagaagataccacaatcgctgagcatcggaacgacaaagtgttgtcctcaccgttgatactcacactggccactgacccactcatcaaagcgttcggcg  20355800                       --------->TOE1(3)   --------->AHL20(2)  --------->YAB1                                                      <---------   <---------AHL20(2)  --------->TOE2(3)                                         <---------ANAC58  --------->AHL20(2)  <---------YAB1                              --------->ANAC58     --------->AHL20(2) ---NtERF2          <-----------GT1                               --------->ANAC58     <---------AHL20(2) ->NtERF2<---------TOE2(3)                                <---------TOE2(3)      <---------ANAC46 -DEAR3(1)      --------->AHL20(2)                    <----------DOF2            <---------ANAC58 --->DEAR3(1)   <---------AHL20(2)               <---------MYB59  --------->ANAC46  ----------->GT1   tccatttaatttaggtgtttaattaccataaacgatgggcctggttatgggcctaacttttatgttatacgcccatttaacttgggtgtttaattacaaa  20355900                                                            <---------MYB59                                                            <---------------AGL15                                                            --------------->AGL15                                                           ----------------->AG                                                       <---------ANAC58                                                       <---------ANAC58                         <----              <----------DOF2                      <---------ANAC58                     ------>MYB46(1)  <----------DOF2                                  <---------ANAC58            ----------->GT1  ----- <---------ANAC58                                 --------->ZAT2        ----------------->AGL1------>ZmHOX2a(1) <---------ANAC58                      --------->AHL20(2)  ----------------->AGL1       ------>MYB83 --GT1     ------>NtERF2--------->CCA1(2)--------->AHL20(2)----------------->AGL3    ------------>CBF   cttgctttagcgacgactttgacgagaaatgagaggcccaatataaaatacgagcttgcttaccaaaatttgagacccaaatagtaaaccaatctcctcc  20356000                --------->ARR14(2)            --------->ANAC58                      ---------->DOF2              --------------->ANT             --------->ANAC58                    <------NtERF2        <---------ZAT18                 <---------ARR11(3)                     --------->ZAT18        --------->ZAT18                 --------->ARR11(3)            --------->ANAC46 --------->At4g35610 -----HSFB2a(2) <---------ARR14(2)     <---------GLK1(2)             --------->HSFB2a(2) ---->HSFB2a(2)--------->GLK1(1)    --------->YAB1          *TSS     <---------HSFB2a(2)   agaatgcaagtggacacaaatccccaagagaaacagaatcaaaatctcaagaaaacctattagccctgtttccagcaagagggcagagaagcagagagag  20356100                                                               <---------ARR14(2)                                    ------>ZmHOX2a(1)    --------->GLK1(1)                         <<<<<<<<<TBF1                   <---------GLK1(1)                    <---------GLK1(2)              <---------ANAC46                   <---------HSFC1(2)           <---------MYB52(1) ------>ZmHOX2a(1)                   --------->At4g35610         ======================================================                   <---------At4g35610         <---------------AGL15             ---------->DOF2<<<<<<<<<TBF1      <---------DAG2  --------->ARR14(2)   --------->ALFIN1--------->HSFC1(2)  ------>ZmHOX2a(1)>>>>>>>>>>GATA-1 <---------At4g35610      ---   agagagtgtgagagagaaagcagcttcttcttcttctcctcctcttctcccttatgtggatttcaaatccttctctgctactctctcttcacatttctct  20356200                             --------->ANAC46                             <---------ALFIN1                           --------->ANAC58                                            <---------HSFC1(2)                           <---------ALFIN1                                            --------->HSFB2a(1)                           --------->ANAC58                                ------>NtERF2                        ------->GAMYB                                      --------->LBD16                  --------->ANAC58                                        --------->ANAC58                  --------->ANAC58                                        --------->ANAC46           --------->At4g35610                                         <---------ARR14(2)           <---------At4g35610                             --------->REM1(1)           --------->HSFC1(2)           ----------->RAV1(2)                 --------------->AGL15   --------->GLK1(2)        <<<<<<<<<TBF1 <---------REM1(2)        <---------------AGL15   --------->ARR14(2) ------>MYB46(1)  --------->ANAC46           <---------At4g35610--------->ANAC58  <---------TOE2(3) ------>MYB83----------->HVH21               --------->At4g35610--------->ANAC58 --------->MYB52(1) ==============================================================MADS_MADS  --------->ANAC58 ------>MYB46(3)--------->ZAT6           <---------ALFIN1----------->RAV1(1)   <---------MYB52(2)   accaacattcttcttctgacactcaacacacacactgcaacttccacagctaaatctagcaacaccaagtcaaaatccgccactaacgatgcttcttcaa  20356300                                                ------>NtERF2                                                --------->LBD16                                               --------->ANAC58                              <-------                                               --------->ANAC46                      ------->GAMYB                                               --------->ANAC58                     <---------ALFIN1                                              <---------LBD16                      -------->P--------                                           ------>ZmHOX2a(1)                       ------>MYB46(1)        <---------ALFIN1             --------->ZAT6                                ------>MYB83      ----------->RAV1(1)            <---------ALFIN1                            --------->AtMYB61   --------->HSFB2a(2)   ------>NtERF2 --------->ANAC46        <---------CCA1(2)--------->MYB46(3)   aacttctccaacaccattttccttctctgcctcttcttcacactcctctccgccactaaacccctaaatctcactctccctcaccaacacccttcccctg  20356400                             ---------->DOF2  --------->LBD16    ----------->GT1                                  --------->AHL20(2) <---------ANAC58    <---------ANAC55(2)                          --------->AHL20(2) <---------ANAC58  <-----------RAV1(2)                        --------->LBD16 --LBD16      <-----------HVH21      ------>ZmHOX2a(1)      <---------LBD16                  -------- --->RAV1(2) --------->bZIP60(2)    <---------ALFIN1      <-----------GT1                   ---------   attccgtcgctctccatgtcatcaggtaaacaaaagctcctccctctctcattacacattttcccagataaaataaaaactcaaactttcttctccgaaa  20356500                                                                                                    <                                                                                                    -                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                       ------>ZmHOX2a(1)       ------                                                               <---------ICU4                <-------                                                        ------>ZmHOX2a(1)                    <-------                                                  <---------YAB1 <---------YAB1              <-------       <---------ZAT6                           <---------ICU4 --------->YAB1              ----------       ----------->GT1                          --------->YAB1<---------YAB1          ------>ZmHOX2a(1)    <------ZmHOX2a(1)                  <---------At4g35610  --------->YAB1    --------->YAB1<-------- <-----------RAV1(2)                   --------->At4g35610  <---------ICU4    <---------ICU4<-------- ->LBD16                               --------->ZAT2  --------->TOE2(3)  ------>ZmHOX2a(1)---------- >ANAC46        ------->TEIL       <---------MYB52(2)XXXXXXXXXXXXXXXXXXXX>MIR414<---------YAB1 ------   ttcacaggagtgtaaatgaatctcttgcaagaagacaactaagctcaccatcatcatcctcatcatcatcatcctcctcatcatcatcctcttgccgtac  20356600  Previous    Next  AGI:  At3g54910.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10400.2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 20353734    to: 20355710    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54920.1    Description:  PMR6 (POWDERY MILDEW RESISTANT 6); lyase/ pectate lyase. Identical to Probable pectate lyase 13 precursor (PMR6) [Arabidopsis Thaliana] (GB:Q93Z04;GB:Q9SV40); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 20356060    to: 20359560    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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