Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <------NtERF2                                       ------>NtERF2                                    <-----------HVH21                                   <---------O2              ------>NtERF2        --------->O2                                             ---------             --------->DEAR3(1)   --------->HSFC1(2)                                       --------->KAN4(1)            --------->DEAR3(2)    <---------HSFC1(2)                                       <---------KAN4(1)            --------->MYB46(3)  --------->ARR14(2)                                        --------->ARR14(2) ------->MYB52(1)            <---------TOE2(3)                                            <---------KAN4(2) ------>AtMYB61          <---------At4g35610                     ------>ZmHOX2a(1)       <---------GLK1(2) -------ALFIN1--------->ABI4(1) <---------ARR14(2)              <---------ANAC58       --------->LBD16 ---->GAMYB<---------At5g28300 <------ZmHOX2a(1)  <---------ARR14(2)                  <---------HSFB2a(2) ------MYB55(2)          --------->At4g35610      --------->ARR14(2) --------->TOE2(3)--------->HSFB2a(2) ----->MYB46(3)        --------->DAG2  <---------DEAR3(2)       <---------ANAC58     <---------LBD16 ------MYB52(2)       ---------->DOF2 <---------DEAR3(1)<----------DOF2    <---------ARR11(3)  <-----   ccaccgaaaaactcaccgccgatataaagctgaggaaacgtcggccaattcgaatactctttaagtccttgcctcaacatctcattctccagaatattca  20353000                   <---------GLK1(2)                   <---------ARR14(2)                         --------->HSFB2a(2)                   --------->ARR14(2)     --------->ALFIN1    <---------HSFB2a(2)            <---------HSFB2a(1)           <-----------RAV1(1)<---------LBD16                     <---       --------->ANAC58             --------->MYB46(3)  <---------ALFIN1                     --------       --------->ANAC58      --------->ARR14(2)    --------->GLK1(2)                       --------->ARR14(2)     ---------->DOF2--------->GLK1(2)----------->RAV1(1)--------->ANAC46                   <---------ARR14(2) >KAN4(2)   --------->KAN4(1)<---------ARR11(3)    <---------ARR14(2)             --------->YAB1 <--- ------GT1 <---------KAN4(2) --------->GLK1(2)     --------->ARR14(2)          <----------DOF2<------   catcttcgaaaggaacattcagattcttcaaaatctgaaccacagtgttggagaatccacacatcgggaagtctctcgttcctttcataaacagaaccac  20353100                                                    <---------ATERF1(1)                                                    ------>NtERF2                                                   ----------->HVH21                                                   --------->DEAR3(1)                                                  --------->DEAR3(2)                                                  --------->RAP2.3(1)                                                 --------->At4g35610                                           <---------SPL7                                          <---------ANAC58                                          <---------ANAC46                                          <---------ANAC58                                         <------NtERF2                                       <---------DEAR3(1)                                       <---------RAP2.3(2)                                       <---------RAP2.6(2)                                       <---------RRTF1(2)         <-----------GT1               <---------ANAC46 <----------CDC5      --------->ARR14(2)      <----------DOF2 ---------->DOF2                               <-------TEIL      <---------ARR14(2)<---------ANAC46 ------>NtERF2 --------->At4g35610         <---------At4g35610 -------DOF2            <---------ANAC58<---------RAP2.3(1)                 <------MYB46(1)--------->GLK1(2) ->MYB46(3)             <---------ANAC58--------->LBD16<---------At4g35610  <---------MYB46(3) ------DAG2    <---------GLK1(2)       <---------RAP2.3(3)     --------->At4g35610 --------->At4g35610 ---ALFIN1     --------->ARR14(2)     <---------LBD16<------NtERF2          <------MYB83   --------->CCA1(2)   tttctccgaattcaccagtttctccagcgtgtctttaagttgcggcgtaagagccgacgctgagcatcggaatttagttggtttcagcttgagattcgaa  20353200                                           <<<<<<<<<<MYB80                                          <------MYB46(1)                                          <---------MYB46(3)                                        -                                          <------MYB83                                              -                                         <---------TOE2(2)                                          -                                        <---------MYB52(1)                                         <-                                      --------->TGA1a                                              --                                      ==============================================MYC_MYB       <--                                      --------->O2                                                ---                                      <---------TGA1a                           --------->MYB52(1)<--                                      <---------O2                     <---------ANAC58          <---                                     <------NtERF2                     <---------ANAC58         -----                 ===============================MYC_MYB           --------->ALFIN1 ------->GAMYB<XXXX                 <-------GAMYB      ------>NtERF2         <---------YAB1     <------MYB46(1)   <-----                <---------MYB46(3)  <---------RAP2.6(3)--------->GLK1(2)     <------MYB83     -------            ----------->HVH21      ----------->HVH21   --------->ARR14(2)  <--------P     <------ZmHOX2a(1)          --------->At4g35610      --------->DEAR3(1)  <---------ARR14(2)<---------MYB46(3)  --------          <---------At4g35610     --------->DEAR3(2)  <---------GLK1(2)<---------ANAC46<------ZmHOX2a(1)   ccgtagaacgatagctgatggttatggacgacgagtgccgacgttggtttaagagagaatctgatagagtgaggcttgttggtaacggaggaggagacga  20353300   <---------------------WRI1 ------>NtERF2 -------->DEAR3(1) -------->ETT(2) ---------->HVH21 -----NtERF2 ------->ATERF1(1)                 ------>ZmHOX2a(2) -------RAP2.3(1)                --------->ARR14(2) --->NtERF2                      <---------ARR14(2) -------ATERF1(1)    <------NtERF2<------ZmHOX2a(2) ------DEAR3(1)     <---------ORA47(2) ---->ATERF1(1)    <---------DEAR4(1)                                                ----------->GT1 XXXXXXXXXXXXXXXXMIR4228    >>>>>>>>>WRKY18                                         --------->DAG2 ----ATERF1(1)     <---------DEAR3(1)             <-----------GT1                 ---------->DOF2 ---->HVH21       <---------ORA47(1)   --------->GLK1(1)<----------DOF2----------->GT1      --------- ->ATERF1(1)<---------YAB1 ----------->HVH21 --------->ICU4            *TSS  <------------CBF       -   cggcgaccgaagttatcaaggtcggcgttttgacagatcggagagccatttttgacgacttttagatttggaattgagaaattgaaaaggtaaatgattt  20353400                                                                                   <---------ICU4                                                                                   --------->ATHB12                                                                                   --------->YAB1                                                                                  --------->ICU4                                                                                  <---------YAB1                                                                                --------->YAB1                                                                                <---------ICU4                                                                               --------->ICU4                                                           ---------->DOF2   --------->YAB1      --------->DEAR4(1)                                --------->ZAT6  <---------ANAC58            -   ----------->RAV1(1)     <------------CBF       <---------ICU4        <---------ANAC58          --- >ATHB12          <---------ANAC58               <---------ATHB12       <---------AtLEC2         ---- -------->ANAC46  <---------ANAC58 <-----------GT1--------->YAB1  <---------MYB52(1)           ------   atgagccacagacactcagtgcgagtgagaattgaataaaccatgttgccaaacatcaccactaagccggtagtgcatgtcataatcatgggtttaaaaa  20353500                           <---------MYB46(3)                           <------MYB83                           <------MYB46(1)                                <---------MYB46(3)                          <---------AtMYB61                               --------->MYB52(2)                        <---------MYB52(1)                                <------MYB46(1)                      <------MYB46(1)                                     <---------DEAR3(2)                      <------MYB83                                        <------MYB83                     --------->MYB59                                     --------->MYB111(1)                   <---------MYB52(1)                                    <---------AtMYB61                   <---------ARR14(2)                                   <--------P             --------->GLK1(2)                           --------->ARR11(3)           <---------HSFB2a(1)                           <---------ARR11(3)    <---------ALFIN1           --------->HSFB2a(1)                  <---------MYB52(1)     <---------ANAC58 <---------ICU4    --------->ARR14(2)          --------->LBD16        --------->ATHB12 -------->ICU4   --------->LBD16             <---------LBD16          <---------MYB46(3) ------>YAB1--------->KAN4(2)              --------->GLK1(2)     --------->ARR11(3) ----->AHL20(2)<---------LBD16       <----------DOF2    <<<<<<<<<RAP2.2<---------ANAC58 --->YAB1<------ZmHOX2a(1)--------->MYB59 <---------GLK1(2)    <---------TOE2(3)        ------>ZmHOX2a(2)   taaaaattagaggacattccggttcggtttggttcgactctttagattccggtattttagatattaagaaattggttggttccacttggatcgtattagt  20353600          --------->YAB1          <---------ICU4          <---------AHL20(1)                                                                        -          <---------AHL20(2)                                                                        <          <--------ATHB1                            <-----------GT1                             -----          --------->AHL20(2)              <----------DOF2                               --------->ANAC58         --------->ICU4   <---------YAB1 <---------ANAC58                <----------DOF2--------->ANAC58       --------->YAB1  --------->ICU4    <---------ANAC58     --------->AGP1        --------->YAB1 <-   atttcggtttaataattttagagaaattatcagggcatcaaatgcttttcagtttttcaacacagagctagttctcttttcttcattcacaaggtatgta  20353700       <---------ALFIN1      <---------REM1(2)      <---------ZAT14      --------->ZAT14                                       --------->YAB1  --------->ZAT6                                           <---------ATHB12          ----------->RAV1(1) -------->ARR11(3)                                         --------->MYB46(3)    <---------ZAT18 ---------ARR11(3)                         --------->YAB1 --------->ANAC46       --------->ZAT18 -->TEIL --------->ANAC46     ----------->GT1   <-----------GT1--------->YAB1<-----------RAV1(1) --------CCA1(2)  <-----------GT1         <---------YAB1 --------->WOX13(1)  <---------AtMYB61   ----   tatatctctacacacctataaaaccccataaacgattaaaacttatcatataacttctccaatcaacataatttgttttttggtggacaacatatagaat  20353800                                                                                             ------>NtERF2                                                                                            ---------                                                                                           --------->LBD16                                                                                          <------NtERF2                                                                                --------->TOE1(2)                                     ---------->DOF2                   <----------ID1     --------->LBD16                       --------->ANAC58                         <---------TOE2(3)        <---------LBD16     <-----------GT1   --------->ANAC58     <-------GAMYB       <---------TOE1(3)        --------->LBD16 ------>DOF2         --------->MYB52(1)    <---------MYB46(3)  <-----------RAV1(2)      <---------LBD16   aaagtttttatcacatacaaaaaaaacggaaaacatagaaaaagatggttgacgaaaacaaattttcaggttgaagacaaaccatacgagcccggggaca  20353900  Previous    Next  AGI:  At3g54900.1    Description:  CXIP1 (CAX INTERACTING PROTEIN 1). Identical to Monothiol glutaredoxin-S14, chloroplast precursor (GRXS14) [Arabidopsis Thaliana] (GB:Q84Y95;GB:Q9SV38); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G04950.1); similar to unknown [Picea sitchensis] (GB:ABK21451.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Glutaredoxin-related protein (InterPro:IPR004480) Range:  from: 20352566    to: 20353371    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54910.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10400.2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 20353734    to: 20355710    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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