Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------>MYB83                                                             --------->AtMYB61                                                             <---------MYB111(2)                                                             <---------MYB46(2)                                              <-------TEIL  --------->ANAC46                                             --------->CCA1(2) ------>MYB46(1)                                    ---------->DOF2         --------->ANAC58            --------->GLK1(1)     <---------YAB1            --------->ANAC58                       <-            <---------GLK1(1)  <---------MYB52(1)         --------->ANAC46                 --------->ARR11(3)           <---------GLK1(2) --------->ANAC55(2)       <---------ARR14(2)      ----------->GT1<------      --------->MYB52(1)     <---------ANAC55(2)       --------->ARR14(2) ---------->DOF2  <---------ARR11(3)   acaaaacataccagatttctcagaaaacaatacgttatgaaagaaagattcaaaccatatacaccaaactcatagcaaaagaagaaaaaaaaacatcttt  20349100                                                                               --------->ARR11(3)                                                                <---------ARR11(3)                               --------->ARR11(3)               --------->ARR11(3)                            --------->AHL20(2)                  <---------GLK1(2)                            <---------AHL20(2)                 <---------RVE1(1)     <-----------GT1     --------->TOE2(3)               --------->MYB52(1)---------->DOF2    <-----------GT1     --------->YAB1              ----------->RAV1(1)   --------->YAB1 ---------DOF2         <-------TEIL             <---------TOE2(3)        <---------ATHB12 ----DOF2     <---------ANAC46 <---------ARR11(3)  <----------ID1      --------->WOX13(1)      ------   ccttttttaacgcattgggtttacattcattaaaatcttcattcatctctaaggcaacaaaacagagatttttcaatcaaagaactagttctatctcctt  20349200                                                       --------->CCA1(2)                                                       <------ZmHOX2a(2)                                                      --------->AGP1                                           <---------AHL20(2)                                          --------->AHL20(2)                                          <---------AHL20(2)                                    -----                                          --------->AHL20(1)                          <------ZmHOX2a(2)                                          <---------AHL20(1)                          ===============                                --------->LBD16       --------->ARR14(2)              --------->CCA1(2)                              <---------LBD16         <---------ARR14(2)             --------->ARR14(2)                            --------->ARR14(2)        <---------ARR11(3)             <---------ARR14(2)                            <---------ARR14(2)        --------->ARR11(3)             --------->ARR11(3)                           --------->GLK1(1)      ---------->DOF2                    --------->AGP1                          <----------DOF2 --------->ARR11(3)             --------->At4g35610   <-----          <---------TOE2(3)<---------GLK1(1) <---------AHL20(2)       <------ZmHOX2a(2)    ---------- >ZmHOX2a(1)     <<<<<<<<<<<<<<<<<LFY     <---------ARR11(3)  --------->AHL20(2)     <---------ARR11(3)   aagaaatgtattgagattaaaacaatggcatttccggtgaagaatatatttttaaagatccaaataaaacagatcagaagcattcaagatccaaaaagat  20349300                                                                            <---------------AGL15                                                                           --------->TOE1(3)                                                                           <---------------AGL15                                                                           --------------->AGL15                                                                          ----------------->AGL1                                                                          ----------------->AG                                                                     --------->ATHB12                                                                     --------->YAB1   <------ZmHOX2a(1)                                                 <---------ICU4 <---------TOE2(3)  --------->ATHB12                                <---------YAB1 ---->GLK1(2)      <---------YAB1                          <---------ARR14(2)          ----------->GT1 =========HOX2a_HOX2a    ---------->DOF2                  <------ZmHOX2a(1)--------->TOE2(3)    ----- ----GLK1(2)     --------->YAB1                   --------->DAG2    --------->ICU4  <------ZmHOX2a(1) >DOF2          <-------TEIL   ---------->DOF2   ---------->DOF2 <------ZmHOX2a(1)<---------TOE2(3)   tctaaggagaaaccaaaattcatgatagaaagagaaagtttgctacataagaaaagtagaggatagaggaatgattaccttaatgaggaaagtatcaaca  20349400                                                                       <------ZmHOX2a(2)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                                      --------->AGP1 <---------ATHB12                                                                      <---------AGP1 ----------->GT1                                                          ----------->GT1       --------->ANAC58                                                         <---------TOE2(3)      --------->ANAC58     <------MYB83                                        ----------->GT1------>ZmHOX2a(2)     <------MYB46(1)                      <---------TOE1(3)           <---------ARR11(3)    --------->MYB59                       <---------TOE2(3)          <---------CCA1(2)--------->YAB1 -->GAMYB                             <----------DOF2  ---------->DOF2--------->ARR11(3)            *TSS   gaaaatttggtagagggattgaaactgcattatatgttttcttttaggttttatatgtaaaggaaaattttagatcttgagtaggcaatgaaaaatcaac  20349500                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                    --------->AHL20(1)                    --------->ICU4                 --------->AHL20(2)             ---------->DOF2    <---------------AGL15    --------->AHL20(1)          --------------->AGL15               <---------ANAC58    <---------AHL20(1)         <-----------------AGL3    ---------->DOF2    --------->AHL20(2)         ----------------->AGL2   --------->AHL20(2)   <------MYB46(1)        <    <---------AHL20(2)  <---------AHL20(2)   --------->AHL20(2)     <---------ANAC46                -   <---------AHL20(2)--------->ATHB51        <---------AHL20(2)     <---------ANAC58----------->GT1 -   --------->AHL20(2)--------->AHL20(2)     --------->AHL20(2)   <---------ZAT14  --------->ICU4----- --------->YAB1 ----------->GT1----------------->AGL3   <---------AHL20(2)   <------MYB83 <---------AHL20(2)   taaaaataaattttaaaaaggaataatttatgagccaaatatagaatttaaaaattaattaaaggagtttacttgtagttggtaatgagtaaataatgta  20349600                                                                 <---------ZAT2                   ---                                                                 <---------At4g35610             ----                               --------->WOX13(1)                --------->ZAT2                ------                              <---------WRKY38(1)            --------->ANAC46                 -------                              <---------WRKY12               --------->ANAC58                 <------                             --------->WRKY18(1)             --------->ANAC58            <---------O2                       <----------DOF2                  --------->PCF2                   <---------ANAC55(1)                    --------->ARR11(3)                --------->ANAC58                   <---------ANAC58                 --------->CCA1(2)          --------->ICU4 <---------ALFIN1              <---------ANAC58 ---------ARR14(2)  <---------ARR11(3)      <---------AHL20(2)   --------->At4g35610     <---------bZIP60(2) -------->ARR14(2) <---------CCA1(2)        --------->AHL20(2)  ------->TEIL             <---------ANAC55(2) ------>TEIL    <---------ARR11(3)     ----------->GT1--------->ANAC58                   <---------ANAC46 -->TEIL        --------->ARR11(3)     XXXXXXXXXXXXXXXXXXX>MIR156G             --------->TOE2(3) <---   tgtatccactagaatacagatatatctttgggtcaatgagacagaaaaaattaagcatgccccacgcagctcaagtttctatctcaatcttacgtggata  20349700                          --------->AHL20(1)                          <---------AHL20(2)             --------->ANAC55(2)                          <---------AHL20(1)             <---------ANAC55(2)    <------ZmHOX2a(1)    --------->YAB1                  =======================bZIP_DOF ------>ATHB12           --------->AHL20(2)              <---------O2 ----->ICU4--------->At4g35610                           <---------TGA1a --->CCA1(2)            <---------YAB1               <-----------HVH21 -->ARR14(2)        <----------DOF2        ----------->GT1  <-----------HVH21     <---------TOE2(3) ---ARR14(2)        ===============================================bZIP_DOF   <----------DOF2 ------YAB1<---------At4g35610           ----------->GT1 --------->O2---------->DOF2             ----   tgattaggaagatagctccattctttattatattggaagagaatggtgaaaattttgtcacatgtcaaatctaaagttttctttaagttttttgaaatat  20349800                  <---------YAB1      --------->ATHB51      <---------AHL20(2)      --------->ATHB12      --------->AHL20(2)                 --------->AHL20(1)     <---------AHL20(2)                  <---------AHL20(2)     --------->AHL20(2)                  --------->AHL20(2)                              --------->AHL20(2)     <---------AHL20(1)             --------->AHL20(2)                    --------->ANAC58  <---------AHL20(1)           <---------AHL20(2)             --------->YAB1             <---------AHL20(2)  --------->AHL20(1)           --------->AHL20(2)             -------->HAHB4            --------->YAB1  --------->AHL20(2)    <---------ANAC58--------->AHL20(2) --------->YAB1 --------->ANAC46  ---------  <---------AHL20(2)    --------->ANAC55(2)              --------->AHL20(2)             --------->AHL20(2) --------->AHL20(2)     <---------ANAC55(2)  ----------->GT1 <---------YAB1     --------->ARR14(2) <---------AHL20(2)     <---------ANAC58<---------AHL20(2)<---------AHL20(2)    <---------ARR14(2)  - ----->AHL20(2)--------->GLK1(2)  <---------TOE2(3)   --------->YAB1      --------->ANAC58  ---------   aaaataaattatttgaaattctgattacttgattttaatgaattaaattgagaaaatcatataataatagaatactaagccatatatgaattaaaatctg  20349900                                                          --------->ATHB12                                                         --------->MYB46(3)                                                   <---------TOE2(3)                   <<<<<<<ZML2                                             <---------AHL20(2)                     <---------HSFB2a(2)      <---------TOE2(3)                      <---------YAB1                         --------->HSFC1(1)  --------->TOE2(3)                          --------->AHL20(2)                     --------->HSFB2a(2) <---------ICU4                           --------->AHL20(1)              ----------->GT1 >ARR11(3)                                <---------AHL20(1)             --------->ARR11(3) -------->ICU4                            <---------ARR11(3)             <---------ARR11(3) >GLK1(2)      --------->ICU4 --------->GLK1(2)   --------->MYB52(1) ---------->DOF2<---------HSFC1(1)   taaacattaatgtggtattgatttttcttcaaattctagctcaatatataattaagggaaccattgaatgtcaaagatgttattttctagaactatgtct  20350000  Previous    Next  AGI:  At3g54880.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68874.1) Range:  from: 20347834    to: 20349500    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version