Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------------AGL15                                   --------------->AGL15                                 --------->LBD16                                --------->ANAC58                                --------->ANAC58                                --------->ANAC46                         <---------ICU4 --------->AHL20(2)             <---------ICU4    --------->MYB46(3)            --------->ICU4     <---------LBD16            --------->ATHB12          --------->YAB1--------->AHL20(1)              <---------WOX13(1)     ---------->ID1       ----------->GT1  --------->AHL20(2)            --------->ATHB12 --------->ANAC55(2)       <---     ---------->DOF2    <---------AHL20(2)<---------TOE2(3)            <---------ANAC55(2)       <--- --------->TOE2(3)      <---------AHL20(1)<---------ANAC55(2) --------->At4g35610              <----- ->ZmHOX2a(1)--------->YAB1 <-----------GT1          --------->ICU4  <-----------GT1    <-----------GT1   aatccataaaagtaataatcccctaaaatattacccgctaaattaagtatgtgcaaagattgatagctaaatcacctatttgttttttttttgctctatg  20329000                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(1)                                               <---------YAB1             --------->ANAC58                                         --------->AHL20(1)               --------->ANAC46                                         <---------AHL20(1)               --------->ANAC58       ----         <---------ANAC58                <---------AHL20(2)         --------->ICU4  <---------YAB1         <---------ANAC46            <---------AHL20(2)            <---------AHL20(1)           ----- ------ANAC58                        --------->AHL20(2)            <---------AHL20(2)--------->YAB1 ------ANAC58                      <----------DOF2                --------->YAB1 --------->AHL20(2) ----YAB1<---------ANAC58  ------->TEIL  --------->AHL20(2)  <---------ANAC46   --------->AHL20(2)---   cttgggttatttcttgaataaaacccatgtatgtattctttaattaattgtgtttgtatacttgtgtataatatttaagcaattttattatagatgaaaa  20329100                                   --------->YAB1          <---------AHL20(2)       <---------ICU4     <---------AHL20(2)         --------->WOX13(1)    --------->AHL20(2)         <---------AHL20(2)                                   --------->At5g28300    <---------AHL20(2)         --------->AHL20(2)                                   <-------GAMYB ----->DAG2                <---------AHL20(2)                         <-----------GT1      --------->TOE2(3) ----->DOF2 <---------AHL20(2)--------->AHL20(2)      <-----------------AGL3    <---------ALFIN1 -------->GT1           ----------->GT1     <---------ATHB12      --------->GLK1(2)----------->GT1   aagtaattttatataaaaatgttgtttagtaaattaatcaacacaaatcagtttttgctaaatatgagaatttttctcttcaccacggttaaaacttaaa  20329200                                    <---------AHL20(1)                                 --------->YAB1                                          --------->AHL20(1)                       <---------AHL20(1)                                              <---------AHL20(2)                    --------->AHL20(2)    <-------TEIL                                 <---------AHL20(1)                <---------TOE2(3)--------->AHL20(2)                              ----------->GT1           <---------AHL20(2)    <---------AHL20(2)                  <---------TOE2(3) --------->AHL20(1)           --------->ATHB12   --------->YAB1              <---------ANAC46<-----------GT1<---------AHL20(1)          --------->ICU4   --------->TOE2(3)            <----------DOF2 <---------KAN4(2)--------->ARR11(3)   actaaaactgtatttattgagataatatatgttaataatatatgttcatacttcatagctttgtggaaattgagaataaccatatgtaaaatattttgag  20329300                                                                                             --------                                                                                            ---------            <-------TEIL                                                              ---------->DOF2         ----------->GT1                                                        ---------->DOF2        <---------------AtSPL8                            --------->AHL20(2)   <---------WRKY12     ---------->DOF2                           ---------->DOF2             --------->DAG2 *TSS  ----- ----------->GT1--------->AHL20(2)  <---------YAB1     <----------DOF2    ---------->DOF2 <------ZmHOX2a(1)   aaatggttaaagggttcataaaataagagacaacacttatgagaaaaaaaaaagagcctttaaaataaaactttggtaaagtcaaaggaaaaggacgata  20329400                                                     <<<<<<<<<TBF1                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <---------ANAC58                                      ------>ZmHOX2a(2)                                    <---------ARR11(3)                                    --------->ARR11(3)                                    <---------ARR14(2)                                    --------->ARR14(3)                                    --------->ARR14(2)              <<<<<<<<<TBF1                                    <---------ARR14(3)  <<<<<<<<<TBF1  <<<<<<<<<TBF1                                <-----------GT1   <<<<<<<<<TBF1  <<<<<<<<<TBF1                           <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1          <---------YAB1  <---------ANAC58 <<<<<<<<<TBF1 --->GT1                 <---------AHL20(2)    <<<<<<<<<TBF1  <<<<<<<<<TBF1                        -- -->GT1                <---------YAB1<------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <- ---->YAB1           <---------AHL20(2)   <------------------------ANAC81                    ------->GAMYB   aaaatcatcaaatcgataagtttttatttttatttgacgatcttgcttcttcttcttcttcttcttcttcttcttcttcaactcgttaccatcaacgctc  20329500                                                           <-----------RAV1(2)                                                           <---------LBD16                     ------                         --------->At5g28300    --------->YAB1                                 ------                        ----------->GT1         <---------ICU4        --------->CCA1(2)        ------                      --------->At4g35610      <---------ATHB12    --------->ANAC58            ------   ------>ZmHOX2a(1)  <---------At4g35610      --------->ICU4--------->LBD16                  ------- ------->ARR14(2)     --------->ZAT2         --------->WOX13(1)    --------->ANAC58          <------- --------ARR14(2)     <---------ZAT2--------->YAB1<---------YAB1 <--------P                  --------   aaatcctgtatacaatctcttctcagctgtaatttctataatctcgtcaattatcatctattcaggggtaagctatgggatgtgcttcttctcttccagg  20329600                                                                                         ------>MYB83                                                                                         ------>MYB46(1) --->ANAC58                                                                            <---------ALFIN1 --->AtLEC2                                                                            --------->AtMYB61 --->ANAC46                                                                            --------->DEAR3(1) --->ANAC58                                                                           --------->MYB46(3) -->LBD16                              <---------MYB52(1)                           <-----------GT1 --HSFB2a(2)                          <-------GAMYB       <------ZmHOX2a(1) --------->ANAC58 ->HSFB2a(2)                   <-----------RAV1(1)      <---------TOE2(3)   --------->ANAC58       --   caagttttgttttctctctcaattttgttgaatttgttgtcgttgttcgaataaaactgaggatttatagagaccctcgagcaatttcaccacccatttt  20329700                                                               <---------TOE2(3)                                                               <---------TOE1(3)                                                          <------MYB46(1)                  <--------P                              <---------MYB46(3)             <---------LBD16                            <---------WOX13(1)          --------->ATHB12                            --------->ATHB12          --------->YAB1                             --------->ICU4          <---------ICU4                             <---------YAB1                                 <         --------->ICU4                           <---------YAB1                                    <         <---------YAB1                       --------->ARR14(2)                        <---------ARR14(2)         <---------ATHB12                 <---------LBD16 <------MYB83    <---------ANAC46         <- ------->LBD16   <-------GAMYB <----------DOF2<---------ARR14(2)       <-----------RAV1(1)       ----   ccgaaggtgtaatcatcggggttgaattagaagcttttaaaaattggggattttgatgattggttagggttttctggtggagaattggagaaaccgaatt  20329800                                                                                                <----                                        <---------HSFB2a(2)                                     <----                                        --------->HSFB2a(2)                                     -----             <---------ANAC58          <---------LBD16                                          -----             <---------ANAC58       --------->GLK1(1)                                 --------->At4g35610    <------MYB46(1)               <------ZmHOX2a(1)                                <---------ZAT2    <------MYB83               --------->CCA1(2)                                   <---------At4g35610 -----------RAV1(1)           <---------ARR14(2)                                   ----------->RAV1(2) ---------MYB46(3)        <---------At4g35610 <----------DOF2                      --------->At4g35610 --------WOX13(1)   <---------ANAC46<---------GLK1(1)                              --------->ZAT2 --- ----->ATHB12<---------ANAC46 --------->ARR14(2)                                 <-----------RAV1(2)   gattgttggtgatttgtgtgttttgtgaagcagataggaactctggaactttaagtggtcttagcaattcagagaatgctgttccagctgatgccaaaaa  20329900  Previous    Next  AGI:  At3g54840.1    Description:  ARA6; GTP binding. similar to ARA7, GTP binding [Arabidopsis thaliana] (TAIR:AT4G19640.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96253.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Rab5-related (InterPro:IPR015599); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 20329390    to: 20331979    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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